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Spg026254 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026254
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold13:14960192..14966984
RNA-Seq ExpressionSpg026254
SyntenySpg026254
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMO72757.1 hypothetical protein CCACVL1_17615 [Corchorus capsularis]4.0e-0842.7Show/hide
Query:  RWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVMVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLFVESDCQLAINFIN
        RWSPP    WK+N+DAA  K++ +  LG + R+FEG+V+ +  K +    +   A L+AI  GL+L  S G     +ESDC LAI  IN
Subjt:  RWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVMVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLFVESDCQLAINFIN

XP_015388012.1 uncharacterized protein LOC107177940 [Citrus sinensis]9.0e-0832.09Show/hide
Query:  MRIKSNEDSSSLDRN--RRWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVMVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLFVESDCQ
        M+ K  +  SS+     +RW+PP     K+N DAA   E  M  LG + RN +G+V+VAA K+++ + +  IAE  A+  GL++      T + VE+DC 
Subjt:  MRIKSNEDSSSLDRN--RRWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVMVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLFVESDCQ

Query:  LAINFI-----NKVSLIWVAHEIARYGKSVNSHD
        +  +       NK  + W   EI    +   S D
Subjt:  LAINFI-----NKVSLIWVAHEIARYGKSVNSHD

XP_024033533.1 uncharacterized protein LOC112095662 [Citrus clementina]6.9e-0832.09Show/hide
Query:  MRIKSNEDSSSLDRN--RRWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVMVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLFVESDCQ
        M+ K  +  SS+     +RW+PP     K+N DAA   E  M  LG + RN +G+V+VAA K+++ + +  I E  A+  GL++      T + VE+DC 
Subjt:  MRIKSNEDSSSLDRN--RRWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVMVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLFVESDCQ

Query:  LAINFI-----NKVSLIWVAHEIARYGKSVNSHD
        +  N       NK  + W   EI    +   S D
Subjt:  LAINFI-----NKVSLIWVAHEIARYGKSVNSHD

XP_024037110.1 uncharacterized protein LOC112097050 [Citrus clementina]9.0e-0843.82Show/hide
Query:  WSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVMVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLFVESDCQLAINFINK
        W PP+   +KLN+DAA  KE  +T LG I RN +G VM A +       +  IAE  AILEGLKL   +  +   +ESD +  +NFI K
Subjt:  WSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVMVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLFVESDCQLAINFINK

XP_040996092.1 LOW QUALITY PROTEIN: uncharacterized protein LOC121242268 [Juglans microcarpa x Juglans regia]3.3e-1044.57Show/hide
Query:  RWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVMVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLFVESDCQLAINFINKVS
        RWSPP+    KLN D A   E++ TSLG I RN  G V++A S+A  V+LE    E  A+L GL+L +++G + L +ESDC   +  +NKV+
Subjt:  RWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVMVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLFVESDCQLAINFINKVS

TrEMBL top hitse value%identityAlignment
A0A1R3HQR7 Ribonuclease H2.0e-0842.7Show/hide
Query:  RWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVMVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLFVESDCQLAINFIN
        RWSPP    WK+N+DAA  K++ +  LG + R+FEG+V+ +  K +    +   A L+AI  GL+L  S G     +ESDC LAI  IN
Subjt:  RWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVMVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLFVESDCQLAINFIN

A0A1S8ABJ9 Ribonuclease H-like superfamily protein (Fragment)4.4e-0843.82Show/hide
Query:  WSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVMVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLFVESDCQLAINFINK
        W PP+   +KLN+DAA  KE  +T LG I RN +G VM A +       +  IAE  AILEGLKL   +  +   +ESD +  +NFI K
Subjt:  WSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVMVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLFVESDCQLAINFINK

A0A2H5QX83 RNase H domain-containing protein2.8e-0736.11Show/hide
Query:  WSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVMVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLFVESDCQLAINFINKVSLIWVAHEIA
        W PP+  ++KLN+DAA   E     LG I RN++G+VM  A+       +  IAE + ILEG+KL   +  + L VESD +         +L  +AH +A
Subjt:  WSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVMVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLFVESDCQLAINFINKVSLIWVAHEIA

Query:  RYGKSVNS
        +   SV +
Subjt:  RYGKSVNS

A0A6J1BQ49 uncharacterized protein LOC1110047862.8e-0744Show/hide
Query:  SNEDSSSLDRNRRWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVMVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLFVESDCQLAINFI
        S + SS    + RW PP     K+NSDAAC    + T LG+I R+  G ++VA S  L + L    AE+  ILE LKL  S   T L VESDCQ AI  +
Subjt:  SNEDSSSLDRNRRWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVMVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLFVESDCQLAINFI

A0A7N2MEF4 RNase H domain-containing protein2.2e-0727.54Show/hide
Query:  WSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVMVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLFVESDCQLAINFINKVSLIWV-----
        W PPN   +K+N+D A  +E+    +G++ RN  G++M A SK +++ L+    E  A+ EG+ L   LG   + +ESD +L +  +    L+ +     
Subjt:  WSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVMVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLFVESDCQLAINFINKVSLIWV-----

Query:  --------------------------AHEIARYGKSVNSHDVWVVD--PLLPKRIKEKVPTGANKIT
                                  AH +AR+ K +N   +WV D  P++   I+  V TG+N I+
Subjt:  --------------------------AHEIARYGKSVNSHDVWVVD--PLLPKRIKEKVPTGANKIT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGGATCAAAAGTAATGAGGATTCTTCTTCTTTGGACAGAAATCGACGGTGGTCTCCTCCGAATGGCGTATTTTGGAAGCTTAACTCTGATGCTGCATGTTCGAAAGA
GGTCTCGATGACAAGTCTTGGGATGATCTGCAGAAATTTTGAGGGCAAAGTTATGGTAGCTGCGTCAAAGGCTTTGGACGTGAGGTTGGAGGCCCATATTGCTGAATTAT
GGGCCATCCTTGAAGGTTTAAAGCTGGTTATTTCATTGGGCTGCACTATGTTATTTGTGGAGTCCGATTGTCAACTTGCTATCAATTTCATCAATAAGGTTTCTCTTATT
TGGGTTGCCCATGAGATTGCTCGATATGGGAAATCTGTAAATAGCCATGACGTTTGGGTAGTTGATCCGTTGCTGCCCAAACGCATCAAAGAAAAGGTCCCAACGGGAGC
GAACAAAATCACAGCTCCAAAGAATATGATCCAAATCTTCCTCCACCTTCTGACAAAGGATGGAACAAAAGGGGCCAAACAAATGGGCATTCCTTCTCAAGAGCCTACCA
AAGACTCAAGCTCTCTCATTTCTCATACTTCTCCATTGCTTGATCCTTCAAGCATTCCCTTCCCATTCCCTATCTTATATAGACTCCCACAAGTCGTTCTTGACCCGGAG
GATATTAGGGAAGACTCTAAGGGTTGTCCTAAGAAGATTGGAGAAGAAAAGAATCCAAGAATGTGCAAAATTGATGTAGTTAGAAGCATCAGTTTCCAGTCCGGTTCGGT
TCAGCAGCTTGAGTCTTGGTCCGGTTCGATTTGCCTGCAGCCGGTTCAGCCCATAAACACACATTACAAGGTTAATGAACCTCCAAAATCGATCAACTTGCATAGTTTAG
GTCGATATCTTGTAAAACAACGGTTACGAGAGAACTCACCCGACAAAATGTTGTCTAAGGCTAGAGATCCATGCTTGGCCTCGAGGCGCCCTGGGAGCGTCCCCCTACGG
ATGGTGTTTGCATGTGTTAATATCAAAGTGAATGGGGAAAGTGTTCATAGTAAGTGGGAGAAGGAAACGTGTCAAACGTATCCTGTGGTCTCCGTCATTAGGTTGCACCG
TGAGATTCCTATGTGCTGCATGCGAGTCGCCCTGGGAGCGATCACCCTACGGAGGGCTTGCGCATGGGATTCAGAACAACGCAAACTCCAGAAAAGGATAGGGTTTCCTA
GGGCCATTCCCAACATTAGCTCTTCCCTACGGTGGCATTGTTGGGGCCGCCCTCTGCGATCTGAAAATGATGGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCGGATCAAAAGTAATGAGGATTCTTCTTCTTTGGACAGAAATCGACGGTGGTCTCCTCCGAATGGCGTATTTTGGAAGCTTAACTCTGATGCTGCATGTTCGAAAGA
GGTCTCGATGACAAGTCTTGGGATGATCTGCAGAAATTTTGAGGGCAAAGTTATGGTAGCTGCGTCAAAGGCTTTGGACGTGAGGTTGGAGGCCCATATTGCTGAATTAT
GGGCCATCCTTGAAGGTTTAAAGCTGGTTATTTCATTGGGCTGCACTATGTTATTTGTGGAGTCCGATTGTCAACTTGCTATCAATTTCATCAATAAGGTTTCTCTTATT
TGGGTTGCCCATGAGATTGCTCGATATGGGAAATCTGTAAATAGCCATGACGTTTGGGTAGTTGATCCGTTGCTGCCCAAACGCATCAAAGAAAAGGTCCCAACGGGAGC
GAACAAAATCACAGCTCCAAAGAATATGATCCAAATCTTCCTCCACCTTCTGACAAAGGATGGAACAAAAGGGGCCAAACAAATGGGCATTCCTTCTCAAGAGCCTACCA
AAGACTCAAGCTCTCTCATTTCTCATACTTCTCCATTGCTTGATCCTTCAAGCATTCCCTTCCCATTCCCTATCTTATATAGACTCCCACAAGTCGTTCTTGACCCGGAG
GATATTAGGGAAGACTCTAAGGGTTGTCCTAAGAAGATTGGAGAAGAAAAGAATCCAAGAATGTGCAAAATTGATGTAGTTAGAAGCATCAGTTTCCAGTCCGGTTCGGT
TCAGCAGCTTGAGTCTTGGTCCGGTTCGATTTGCCTGCAGCCGGTTCAGCCCATAAACACACATTACAAGGTTAATGAACCTCCAAAATCGATCAACTTGCATAGTTTAG
GTCGATATCTTGTAAAACAACGGTTACGAGAGAACTCACCCGACAAAATGTTGTCTAAGGCTAGAGATCCATGCTTGGCCTCGAGGCGCCCTGGGAGCGTCCCCCTACGG
ATGGTGTTTGCATGTGTTAATATCAAAGTGAATGGGGAAAGTGTTCATAGTAAGTGGGAGAAGGAAACGTGTCAAACGTATCCTGTGGTCTCCGTCATTAGGTTGCACCG
TGAGATTCCTATGTGCTGCATGCGAGTCGCCCTGGGAGCGATCACCCTACGGAGGGCTTGCGCATGGGATTCAGAACAACGCAAACTCCAGAAAAGGATAGGGTTTCCTA
GGGCCATTCCCAACATTAGCTCTTCCCTACGGTGGCATTGTTGGGGCCGCCCTCTGCGATCTGAAAATGATGGGTAA
Protein sequenceShow/hide protein sequence
MRIKSNEDSSSLDRNRRWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVMVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLFVESDCQLAINFINKVSLI
WVAHEIARYGKSVNSHDVWVVDPLLPKRIKEKVPTGANKITAPKNMIQIFLHLLTKDGTKGAKQMGIPSQEPTKDSSSLISHTSPLLDPSSIPFPFPILYRLPQVVLDPE
DIREDSKGCPKKIGEEKNPRMCKIDVVRSISFQSGSVQQLESWSGSICLQPVQPINTHYKVNEPPKSINLHSLGRYLVKQRLRENSPDKMLSKARDPCLASRRPGSVPLR
MVFACVNIKVNGESVHSKWEKETCQTYPVVSVIRLHREIPMCCMRVALGAITLRRACAWDSEQRKLQKRIGFPRAIPNISSSLRWHCWGRPLRSENDG