; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg026271 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026271
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold13:14941615..14943225
RNA-Seq ExpressionSpg026271
SyntenySpg026271
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0008233 - peptidase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]2.6e-1666.67Show/hide
Query:  MSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSL
        MST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M + + K F E N D K+HS +PSRMKRK SV INTEGSL
Subjt:  MSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSL

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.4e-1667.5Show/hide
Query:  STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSL
        ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HS +PSRMKRK SV INTEGSL
Subjt:  STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSL

KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]3.4e-1667.5Show/hide
Query:  STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSL
        ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HS +PSRMKRK SV INTEGSL
Subjt:  STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSL

KAA0055462.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.5e-1666.25Show/hide
Query:  STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSL
        ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+H+ +PSRMKRK SV INTEGSL
Subjt:  STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSL

TYK08944.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.5e-1666.25Show/hide
Query:  STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSL
        ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+H+ +PSRMKRK SV INTEGSL
Subjt:  STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSL

TrEMBL top hitse value%identityAlignment
A0A5A7SZJ7 Retrotransposon gag protein1.2e-1666.67Show/hide
Query:  MSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSL
        MST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M + + K F E N D K+HS +PSRMKRK SV INTEGSL
Subjt:  MSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSL

A0A5A7TGM1 Retrotransposon gag protein3.6e-1666.25Show/hide
Query:  STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSL
        ST TR SAF+ LS+STSKK R STS FDRLK+ NDQ +R+M +L++K F E N D K+HS +PSRMKRK SV INTEGSL
Subjt:  STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSL

A0A5A7TQ06 Retrotransposon gag protein1.6e-1667.5Show/hide
Query:  STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSL
        ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HS +PSRMKRK SV INTEGSL
Subjt:  STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSL

A0A5A7UI09 Retrotransposon gag protein3.6e-1666.25Show/hide
Query:  STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSL
        ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+H+ +PSRMKRK SV INTEGSL
Subjt:  STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSL

A0A5D3BBF9 Gag protease polyprotein1.6e-1667.5Show/hide
Query:  STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSL
        ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HS +PSRMKRK SV INTEGSL
Subjt:  STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCA
ACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTAGCATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTC
TCATAAATACGGAAGGTTCCTTGAAGTTCGAGGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTGGTGCGCTGTTGCATTGTTC
CCTCTTCTCTCAAGTTCGAAGGTTCTCACGCGCTTCGCTACCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGTGCTTCGCTGCAGTTCCTTCCTCCAACT
TCGAAGGTTCTCACGCGCTTCGCTACAGTTCCTTCCTCCAACTTCGAAGTTCCCTTCCTCAAAGCTCGATGGTTCTCACGCCGCTTCGCTACAGTTCCTTCCTCATAGTT
TAAAGGTTCTCACGCCGCTTCGCTGCGTTCCTTCCTCCAAATTCGAAGGTTCTTCTTCTCCAAATTCGAAGGTTCTCACGCCGCTTCGCTGCGTTCCTTCCTCCAAATTC
GAAGGTTCTTCTTCTCCAAATTCGAAGGTTCTCACGCCGCTTCGCTGCGTTCCTTCCTCCAAATTTGAAGGTTCTTCTTCTCCAAATTCGAAGTTTCCTCATAGTTTGAA
GGTTCTCACCTGCGCTGCTTGCGTTCCTTCCCCCAAATTCGAAGGTTCTCACACGCTTCGCTGCAGTTCCTTCTTCCTCCAAGTTCCAAGTTCGAAGGAAGGTTCTCACG
CGCTTGCTTCGCTGCAGTTCCTTCTTCCTCCAAGTTCAAGTTCGAAGGTTCTCACGCGCTTCGCTCCCAAGTTCAAGTTCAAGTTCGAAGGTTCTCATGCGCTTCGCCCC
CAAGTTCCTCCAAGTTCGCTTCGCTGTTGCAGTTTCTCCCCAAGTCTTGAAAGGTTTCTCCTGCGACCTTTAAATATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCA
ACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTAGCATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTC
TCATAAATACGGAAGGTTCCTTGAAGTTCGAGGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTGGTGCGCTGTTGCATTGTTC
CCTCTTCTCTCAAGTTCGAAGGTTCTCACGCGCTTCGCTACCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGTGCTTCGCTGCAGTTCCTTCCTCCAACT
TCGAAGGTTCTCACGCGCTTCGCTACAGTTCCTTCCTCCAACTTCGAAGTTCCCTTCCTCAAAGCTCGATGGTTCTCACGCCGCTTCGCTACAGTTCCTTCCTCATAGTT
TAAAGGTTCTCACGCCGCTTCGCTGCGTTCCTTCCTCCAAATTCGAAGGTTCTTCTTCTCCAAATTCGAAGGTTCTCACGCCGCTTCGCTGCGTTCCTTCCTCCAAATTC
GAAGGTTCTTCTTCTCCAAATTCGAAGGTTCTCACGCCGCTTCGCTGCGTTCCTTCCTCCAAATTTGAAGGTTCTTCTTCTCCAAATTCGAAGTTTCCTCATAGTTTGAA
GGTTCTCACCTGCGCTGCTTGCGTTCCTTCCCCCAAATTCGAAGGTTCTCACACGCTTCGCTGCAGTTCCTTCTTCCTCCAAGTTCCAAGTTCGAAGGAAGGTTCTCACG
CGCTTGCTTCGCTGCAGTTCCTTCTTCCTCCAAGTTCAAGTTCGAAGGTTCTCACGCGCTTCGCTCCCAAGTTCAAGTTCAAGTTCGAAGGTTCTCATGCGCTTCGCCCC
CAAGTTCCTCCAAGTTCGCTTCGCTGTTGCAGTTTCTCCCCAAGTCTTGAAAGGTTTCTCCTGCGACCTTTAAATATGTAG
Protein sequenceShow/hide protein sequence
MSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKFEGSQLYDCYVVPPPSAKDLMWCAVALF
PLLSSSKVLTRFATFAAVPSSKFEGSHVLRCSSFLQLRRFSRASLQFLPPTSKFPSSKLDGSHAASLQFLPHSLKVLTPLRCVPSSKFEGSSSPNSKVLTPLRCVPSSKF
EGSSSPNSKVLTPLRCVPSSKFEGSSSPNSKFPHSLKVLTCAACVPSPKFEGSHTLRCSSFFLQVPSSKEGSHALASLQFLLPPSSSSKVLTRFAPKFKFKFEGSHALRP
QVPPSSLRCCSFSPSLERFLLRPLNM