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Spg026319 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026319
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold13:17162266..17164571
RNA-Seq ExpressionSpg026319
SyntenySpg026319
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.2e-0643.96Show/hide
Query:  RGNRPSLQTRELTKT-----------------VEIELPVPDTLPTSAESTKSTFSSSIQQ----------GQQVSLEEDDICWLHAISLTK
        RGNRPSLQT EL KT                 VEIELP+PDTLPTSAES++S  S+ ++           G    +  DD+CWLHA+   K
Subjt:  RGNRPSLQTRELTKT-----------------VEIELPVPDTLPTSAESTKSTFSSSIQQ----------GQQVSLEEDDICWLHAISLTK

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]7.6e-0842.86Show/hide
Query:  SFRQRGNRPSLQTRELTKTVEIELPVPDTLPTSAESTKSTFSSSIQ--------------------------QGQQVSLEEDDICWLHAISLTKLAVS
        S   RGNRP+L T +L KTVEIELPVPDTLPTSAES+KS  S+ ++                          +G    +  DD+CWLHA+   K A S
Subjt:  SFRQRGNRPSLQTRELTKTVEIELPVPDTLPTSAESTKSTFSSSIQ--------------------------QGQQVSLEEDDICWLHAISLTKLAVS

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]4.9e-0747.25Show/hide
Query:  RFHSFRQRGNRPSLQTRELTKT-----------------VEIELPVPDTLPTSAESTKS-TFSSSIQQGQQVSLEEDDICWLHAISLTKLA
        + +  R RGNRPSLQT +L KT                 VEIELPVPDTLPTSAES +S + S+ I +G       DD+CWLHA+   K A
Subjt:  RFHSFRQRGNRPSLQTRELTKT-----------------VEIELPVPDTLPTSAESTKS-TFSSSIQQGQQVSLEEDDICWLHAISLTKLA

KAA0066795.1 uncharacterized protein E6C27_scaffold271G001440 [Cucumis melo var. makuwa]1.9e-0638.93Show/hide
Query:  LFDLSYTERTKRRKIEGSREARIYTCCVRGIVGQICWESRFHSFRQRGNRPSLQTRELTKTVEIELPVPDTLPTSAESTKSTFSSSIQ------------
        LF LSY E TK           +       ++     + + +    RGNRPSLQTREL KT  IELPVPDTLPTSAES+ S  S+ ++            
Subjt:  LFDLSYTERTKRRKIEGSREARIYTCCVRGIVGQICWESRFHSFRQRGNRPSLQTRELTKTVEIELPVPDTLPTSAESTKSTFSSSIQ------------

Query:  QGQQVSLEEDDICWLHAISLTKLAVSAKKNL
        +GQQ SLEE  +    + + + L VS   NL
Subjt:  QGQQVSLEEDDICWLHAISLTKLAVSAKKNL

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.2e-0643.96Show/hide
Query:  RGNRPSLQTRELTKT-----------------VEIELPVPDTLPTSAESTKSTFSSSIQQ----------GQQVSLEEDDICWLHAISLTK
        RGNRPSLQT EL KT                 VEIELP+PDTLPTSAES++S  S+ ++           G    +  DD+CWLHA+   K
Subjt:  RGNRPSLQTRELTKT-----------------VEIELPVPDTLPTSAESTKSTFSSSIQQ----------GQQVSLEEDDICWLHAISLTK

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase1.5e-0643.96Show/hide
Query:  RGNRPSLQTRELTKT-----------------VEIELPVPDTLPTSAESTKSTFSSSIQQ----------GQQVSLEEDDICWLHAISLTK
        RGNRPSLQT EL KT                 VEIELP+PDTLPTSAES++S  S+ ++           G    +  DD+CWLHA+   K
Subjt:  RGNRPSLQTRELTKT-----------------VEIELPVPDTLPTSAESTKSTFSSSIQQ----------GQQVSLEEDDICWLHAISLTK

A0A5A7UAH6 CCHC-type domain-containing protein3.7e-0842.86Show/hide
Query:  SFRQRGNRPSLQTRELTKTVEIELPVPDTLPTSAESTKSTFSSSIQ--------------------------QGQQVSLEEDDICWLHAISLTKLAVS
        S   RGNRP+L T +L KTVEIELPVPDTLPTSAES+KS  S+ ++                          +G    +  DD+CWLHA+   K A S
Subjt:  SFRQRGNRPSLQTRELTKTVEIELPVPDTLPTSAESTKSTFSSSIQ--------------------------QGQQVSLEEDDICWLHAISLTKLAVS

A0A5D3BAD1 Retrotrans_gag domain-containing protein2.4e-0747.25Show/hide
Query:  RFHSFRQRGNRPSLQTRELTKT-----------------VEIELPVPDTLPTSAESTKS-TFSSSIQQGQQVSLEEDDICWLHAISLTKLA
        + +  R RGNRPSLQT +L KT                 VEIELPVPDTLPTSAES +S + S+ I +G       DD+CWLHA+   K A
Subjt:  RFHSFRQRGNRPSLQTRELTKT-----------------VEIELPVPDTLPTSAESTKS-TFSSSIQQGQQVSLEEDDICWLHAISLTKLA

A0A5D3D150 Reverse transcriptase1.5e-0643.96Show/hide
Query:  RGNRPSLQTRELTKT-----------------VEIELPVPDTLPTSAESTKSTFSSSIQQ----------GQQVSLEEDDICWLHAISLTK
        RGNRPSLQT EL KT                 VEIELP+PDTLPTSAES++S  S+ ++           G    +  DD+CWLHA+   K
Subjt:  RGNRPSLQTRELTKT-----------------VEIELPVPDTLPTSAESTKSTFSSSIQQ----------GQQVSLEEDDICWLHAISLTK

A0A5D3DWP3 Uncharacterized protein9.0e-0738.93Show/hide
Query:  LFDLSYTERTKRRKIEGSREARIYTCCVRGIVGQICWESRFHSFRQRGNRPSLQTRELTKTVEIELPVPDTLPTSAESTKSTFSSSIQ------------
        LF LSY E TK           +       ++     + + +    RGNRPSLQTREL KT  IELPVPDTLPTSAES+ S  S+ ++            
Subjt:  LFDLSYTERTKRRKIEGSREARIYTCCVRGIVGQICWESRFHSFRQRGNRPSLQTRELTKTVEIELPVPDTLPTSAESTKSTFSSSIQ------------

Query:  QGQQVSLEEDDICWLHAISLTKLAVSAKKNL
        +GQQ SLEE  +    + + + L VS   NL
Subjt:  QGQQVSLEEDDICWLHAISLTKLAVSAKKNL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGAATCTAGGTTCAACCTGCCTATCTCTGGTTTTTTATTCGATTTGAGCTACACAGAAAGAACTAAGAGGAGAAAGATAGAGGGTAGCAGAGAAGCTCGAATCTA
TACTTGTTGTGTTCGGGGGATTGTTGGACAAATCTGTTGGGAATCTCGTTTTCATTCCTTCAGGCAAAGAGGAAATAGGCCGAGTTTACAGACCAGGGAACTAACCAAGA
CTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTACCAAGTCGACTTTCAGTTCATCGATTCAGCAGGGTCAACAGGTATCGTTAGAGGAG
GACGATATCTGTTGGCTTCACGCCATCTCCCTGACTAAGCTAGCAGTTAGTGCTAAGAAGAATCTAGGAAGTGAACAGTTAGACGATGAGTCAGTTCAGATAGAACTAGC
GGAGTACGGTCCAAGTATTGTTGAGAATCAGTCCAGTCAGGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAGAATCTAGGTTCAACCTGCCTATCTCTGGTTTTTTATTCGATTTGAGCTACACAGAAAGAACTAAGAGGAGAAAGATAGAGGGTAGCAGAGAAGCTCGAATCTA
TACTTGTTGTGTTCGGGGGATTGTTGGACAAATCTGTTGGGAATCTCGTTTTCATTCCTTCAGGCAAAGAGGAAATAGGCCGAGTTTACAGACCAGGGAACTAACCAAGA
CTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTACCAAGTCGACTTTCAGTTCATCGATTCAGCAGGGTCAACAGGTATCGTTAGAGGAG
GACGATATCTGTTGGCTTCACGCCATCTCCCTGACTAAGCTAGCAGTTAGTGCTAAGAAGAATCTAGGAAGTGAACAGTTAGACGATGAGTCAGTTCAGATAGAACTAGC
GGAGTACGGTCCAAGTATTGTTGAGAATCAGTCCAGTCAGGACTAG
Protein sequenceShow/hide protein sequence
MAESRFNLPISGFLFDLSYTERTKRRKIEGSREARIYTCCVRGIVGQICWESRFHSFRQRGNRPSLQTRELTKTVEIELPVPDTLPTSAESTKSTFSSSIQQGQQVSLEE
DDICWLHAISLTKLAVSAKKNLGSEQLDDESVQIELAEYGPSIVENQSSQD