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Spg026326 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026326
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold13:19125873..19130972
RNA-Seq ExpressionSpg026326
SyntenySpg026326
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040420.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa]2.4e-1158.75Show/hide
Query:  PRGNRPSLQTRKLAKTVEIELPVPDTLSTFAESSSSSSSTWVELYIES------------------------GQQGSLEE
        PRGNRPSLQT KL KTVEIELP+PDTL TFAES  S+SSTW+ELY ES                        GQQGSLEE
Subjt:  PRGNRPSLQTRKLAKTVEIELPVPDTLSTFAESSSSSSSTWVELYIES------------------------GQQGSLEE

KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.4e-1151.58Show/hide
Query:  PRGNRPSLQTRKLAKT-----------------VEIELPVPDTLSTFAESSSSSSSTWVELYIES------GQQGSLEEDDVCWLHAISLTKLAG
        PRGNRPSLQT +L KT                 VEIELP+PDTL T AESS S+SST +ELY ES      G  G +  DDVCWLHA+   K  G
Subjt:  PRGNRPSLQTRKLAKT-----------------VEIELPVPDTLSTFAESSSSSSSTWVELYIES------GQQGSLEEDDVCWLHAISLTKLAG

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]1.8e-1453.19Show/hide
Query:  PRGNRPSLQTRKLAKTVEIELPVPDTLSTFAESSSSSSSTWVELYIES----------------------GQQGSLEEDDVCWLHAISLTKLAG
        PRGNRP+L T KL KTVEIELPVPDTL T AESS S+SSTW+ELY ES                      G  G +  DD+CWLHA+   K AG
Subjt:  PRGNRPSLQTRKLAKTVEIELPVPDTLSTFAESSSSSSSTWVELYIES----------------------GQQGSLEEDDVCWLHAISLTKLAG

TYK01618.1 uncharacterized protein E5676_scaffold451G002250 [Cucumis melo var. makuwa]6.4e-1239.49Show/hide
Query:  KLNQKLYLVWLESRFNFRNKIEGSREARICVFCVRGISGQIGCPRGNRPSLQTRKLAKT-----------------VEIELPVPDTLSTFAESSSSSSST
        K NQKLYLVWLES FN                        +  PR NRPSLQT +L KT                 VEIEL VP+TL T AESS S+SST
Subjt:  KLNQKLYLVWLESRFNFRNKIEGSREARICVFCVRGISGQIGCPRGNRPSLQTRKLAKT-----------------VEIELPVPDTLSTFAESSSSSSST

Query:  WVELYIES-------------------------GQQGSLEEDDVCWLHAISLTKLAG
        W+ELY ES                         G  G +   DVCWLHA+   K AG
Subjt:  WVELYIES-------------------------GQQGSLEEDDVCWLHAISLTKLAG

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.4e-1151.58Show/hide
Query:  PRGNRPSLQTRKLAKT-----------------VEIELPVPDTLSTFAESSSSSSSTWVELYIES------GQQGSLEEDDVCWLHAISLTKLAG
        PRGNRPSLQT +L KT                 VEIELP+PDTL T AESS S+SST +ELY ES      G  G +  DDVCWLHA+   K  G
Subjt:  PRGNRPSLQTRKLAKT-----------------VEIELPVPDTLSTFAESSSSSSSTWVELYIES------GQQGSLEEDDVCWLHAISLTKLAG

TrEMBL top hitse value%identityAlignment
A0A5A7TAS6 NBS-LRR type resistance protein1.2e-1158.75Show/hide
Query:  PRGNRPSLQTRKLAKTVEIELPVPDTLSTFAESSSSSSSTWVELYIES------------------------GQQGSLEE
        PRGNRPSLQT KL KTVEIELP+PDTL TFAES  S+SSTW+ELY ES                        GQQGSLEE
Subjt:  PRGNRPSLQTRKLAKTVEIELPVPDTLSTFAESSSSSSSTWVELYIES------------------------GQQGSLEE

A0A5A7TKT0 Reverse transcriptase6.9e-1251.58Show/hide
Query:  PRGNRPSLQTRKLAKT-----------------VEIELPVPDTLSTFAESSSSSSSTWVELYIES------GQQGSLEEDDVCWLHAISLTKLAG
        PRGNRPSLQT +L KT                 VEIELP+PDTL T AESS S+SST +ELY ES      G  G +  DDVCWLHA+   K  G
Subjt:  PRGNRPSLQTRKLAKT-----------------VEIELPVPDTLSTFAESSSSSSSTWVELYIES------GQQGSLEEDDVCWLHAISLTKLAG

A0A5A7UAH6 CCHC-type domain-containing protein8.7e-1553.19Show/hide
Query:  PRGNRPSLQTRKLAKTVEIELPVPDTLSTFAESSSSSSSTWVELYIES----------------------GQQGSLEEDDVCWLHAISLTKLAG
        PRGNRP+L T KL KTVEIELPVPDTL T AESS S+SSTW+ELY ES                      G  G +  DD+CWLHA+   K AG
Subjt:  PRGNRPSLQTRKLAKTVEIELPVPDTLSTFAESSSSSSSTWVELYIES----------------------GQQGSLEEDDVCWLHAISLTKLAG

A0A5D3BRI2 Uncharacterized protein3.1e-1239.49Show/hide
Query:  KLNQKLYLVWLESRFNFRNKIEGSREARICVFCVRGISGQIGCPRGNRPSLQTRKLAKT-----------------VEIELPVPDTLSTFAESSSSSSST
        K NQKLYLVWLES FN                        +  PR NRPSLQT +L KT                 VEIEL VP+TL T AESS S+SST
Subjt:  KLNQKLYLVWLESRFNFRNKIEGSREARICVFCVRGISGQIGCPRGNRPSLQTRKLAKT-----------------VEIELPVPDTLSTFAESSSSSSST

Query:  WVELYIES-------------------------GQQGSLEEDDVCWLHAISLTKLAG
        W+ELY ES                         G  G +   DVCWLHA+   K AG
Subjt:  WVELYIES-------------------------GQQGSLEEDDVCWLHAISLTKLAG

A0A5D3D150 Reverse transcriptase6.9e-1251.58Show/hide
Query:  PRGNRPSLQTRKLAKT-----------------VEIELPVPDTLSTFAESSSSSSSTWVELYIES------GQQGSLEEDDVCWLHAISLTKLAG
        PRGNRPSLQT +L KT                 VEIELP+PDTL T AESS S+SST +ELY ES      G  G +  DDVCWLHA+   K  G
Subjt:  PRGNRPSLQTRKLAKT-----------------VEIELPVPDTLSTFAESSSSSSSTWVELYIES------GQQGSLEEDDVCWLHAISLTKLAG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTACCGAATGGAAAAGCTAATGTTGAAAATGGTCCTAAGAAATCCTATCCATTTATGGAGTTTTCGTTGTTCCGATCTCCATGTTACAACCCTCTAAATGAGCACAG
GATTTTCGTGCAAACCAGGAGGATCTCTAGTTTTCTCTTGTTTTTCGAGCATTCTGGGTTGTGCAAGTTGAATCAGAAGCTCTATTTGGTATGGTTGGAAAGTAGGTTTA
ATTTCAGAAATAAGATAGAGGGTAGCAGAGAAGCTCGAATCTGTGTTTTCTGTGTTCGGGGCATTTCTGGACAAATTGGTTGCCCAAGAGGAAATAGGCCGAGTCTACAG
ACCAGGAAACTAGCTAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGTCAACGTTTGCTGAAAGTTCCAGTTCAAGCTCCAGTACGTGGGTGGAGTTGTACAT
TGAGTCTGGTCAACAGGGATCGTTAGAAGAGGACGATGTTTGCTGGCTTCACGCCATCTCCCTGACTAAGCTAGCAGGTGAGTTTGAGACCAAATTCCAGCAGCATAACA
GTATGGAAATTATTGTGTTCAACTCTCAATCTGATTCTACCTCTACTTATAGAGTGAATTCATGCATCAAGAAGCCTCAAGATGCAAGACACATGGGGGACACTACAAGA
AAAATTGACTTACTTGATGCTTTTGGAATGTCAACTGTTAATACTCTTGATGCTTTTGGAATGTCAACTGTTAATACTCTTGACGCTTTTAAAAGCGTCGAGAGAACCAC
TGTCAAGAATAAGGTATCGAAAATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTACCGAATGGAAAAGCTAATGTTGAAAATGGTCCTAAGAAATCCTATCCATTTATGGAGTTTTCGTTGTTCCGATCTCCATGTTACAACCCTCTAAATGAGCACAG
GATTTTCGTGCAAACCAGGAGGATCTCTAGTTTTCTCTTGTTTTTCGAGCATTCTGGGTTGTGCAAGTTGAATCAGAAGCTCTATTTGGTATGGTTGGAAAGTAGGTTTA
ATTTCAGAAATAAGATAGAGGGTAGCAGAGAAGCTCGAATCTGTGTTTTCTGTGTTCGGGGCATTTCTGGACAAATTGGTTGCCCAAGAGGAAATAGGCCGAGTCTACAG
ACCAGGAAACTAGCTAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGTCAACGTTTGCTGAAAGTTCCAGTTCAAGCTCCAGTACGTGGGTGGAGTTGTACAT
TGAGTCTGGTCAACAGGGATCGTTAGAAGAGGACGATGTTTGCTGGCTTCACGCCATCTCCCTGACTAAGCTAGCAGGTGAGTTTGAGACCAAATTCCAGCAGCATAACA
GTATGGAAATTATTGTGTTCAACTCTCAATCTGATTCTACCTCTACTTATAGAGTGAATTCATGCATCAAGAAGCCTCAAGATGCAAGACACATGGGGGACACTACAAGA
AAAATTGACTTACTTGATGCTTTTGGAATGTCAACTGTTAATACTCTTGATGCTTTTGGAATGTCAACTGTTAATACTCTTGACGCTTTTAAAAGCGTCGAGAGAACCAC
TGTCAAGAATAAGGTATCGAAAATGTGA
Protein sequenceShow/hide protein sequence
MLPNGKANVENGPKKSYPFMEFSLFRSPCYNPLNEHRIFVQTRRISSFLLFFEHSGLCKLNQKLYLVWLESRFNFRNKIEGSREARICVFCVRGISGQIGCPRGNRPSLQ
TRKLAKTVEIELPVPDTLSTFAESSSSSSSTWVELYIESGQQGSLEEDDVCWLHAISLTKLAGEFETKFQQHNSMEIIVFNSQSDSTSTYRVNSCIKKPQDARHMGDTTR
KIDLLDAFGMSTVNTLDAFGMSTVNTLDAFKSVERTTVKNKVSKM