; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg026328 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026328
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold13:15778426..15790496
RNA-Seq ExpressionSpg026328
SyntenySpg026328
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.3e-1145.37Show/hide
Query:  ELAKAPEAIWYRVHTGYIPLLTLSVLRDNDAVVSVGQVEIELPVPDNCQSLFSVKSSQIEFQYVGGVVHRVCSTIQQGQQVSLEEDDVRWLHAISRTKLA
        E+   PEA  YRVHTGY+PLLTLSVLRDNDA+     VEIE  VP+         +S   F      +    ST+   +Q+S+E+  V  LH + ++KLA
Subjt:  ELAKAPEAIWYRVHTGYIPLLTLSVLRDNDAVVSVGQVEIELPVPDNCQSLFSVKSSQIEFQYVGGVVHRVCSTIQQGQQVSLEEDDVRWLHAISRTKLA

Query:  GRSGGGVT
        G  GGGVT
Subjt:  GRSGGGVT

KAA0037514.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-1045.99Show/hide
Query:  QDEFEAPLSMVGKLIQFPMPFMKNAPIENRPSLQTRELAKAPEAIWYRVHTGYIPLLTLSVLRDNDAVVSVGQVEIELPVPD----NCQSLFSVKSSQIE
        Q E EA L  VGKLIQ+P  FMK  P  NRPSLQTREL K          T    L TLSVLRDNDAV     VEIELPVPD    + +S  S  S+ +E
Subjt:  QDEFEAPLSMVGKLIQFPMPFMKNAPIENRPSLQTRELAKAPEAIWYRVHTGYIPLLTLSVLRDNDAVVSVGQVEIELPVPD----NCQSLFSVKSSQIE

Query:  FQYVGGVVHRVCSTIQQ------------GQQVSLEE
          +    V   C    Q            GQQ SLEE
Subjt:  FQYVGGVVHRVCSTIQQ------------GQQVSLEE

KAA0045180.1 uncharacterized protein E6C27_scaffold30G001810 [Cucumis melo var. makuwa]1.5e-1138.6Show/hide
Query:  QDEFEAPLSMVGKLIQFPMPFMKNAPIENRPSLQTRELAKAPEAIWYRVHTGYIPLLTLSVLRDNDAVVSVG-----------QVEIELPVPD-------
        Q E EA   MVGKLIQ+P   MK  P  NRPSLQT EL K          T    L TLSVL DND VVS G           QVEIELPVPD       
Subjt:  QDEFEAPLSMVGKLIQFPMPFMKNAPIENRPSLQTRELAKAPEAIWYRVHTGYIPLLTLSVLRDNDAVVSVG-----------QVEIELPVPD-------

Query:  ----------NCQSLFSVKSSQIEFQYVGGVVHRVCSTIQQGQQVSLEEDDVRWLHAISRTKLAGRSGGGV
                  +C    S+    +   Y    V        +G    +  DDV  +HA+ + K AG  GGGV
Subjt:  ----------NCQSLFSVKSSQIEFQYVGGVVHRVCSTIQQGQQVSLEEDDVRWLHAISRTKLAGRSGGGV

TYJ96574.1 uncharacterized protein E5676_scaffold791G00040 [Cucumis melo var. makuwa]1.8e-0935.93Show/hide
Query:  QDEFEAPLSMVGKLIQFPMPFMKNAPIENRPSLQTRELAKA------PEAIWYRVHTG-----YIPLLTLSVLRDNDAVVSVG-----------QVEIEL
        Q E EA   +V KLIQ+P  FMK  PI NR SLQ  EL K        E +  R++         PL TLSVLRDN+A V +            +V  + 
Subjt:  QDEFEAPLSMVGKLIQFPMPFMKNAPIENRPSLQTRELAKA------PEAIWYRVHTG-----YIPLLTLSVLRDNDAVVSVG-----------QVEIEL

Query:  PVPD-NCQSLFSVKSSQIEFQYVGGVVHRVCSTIQQGQQVSLEEDDVRWLHAISRTKLAGRSGGGVT
        PV   +C S   +    +   Y    V        +G    +  DDV WLHA+ R K  G  GGGVT
Subjt:  PVPD-NCQSLFSVKSSQIEFQYVGGVVHRVCSTIQQGQQVSLEEDDVRWLHAISRTKLAGRSGGGVT

TYK01989.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-1045.99Show/hide
Query:  QDEFEAPLSMVGKLIQFPMPFMKNAPIENRPSLQTRELAKAPEAIWYRVHTGYIPLLTLSVLRDNDAVVSVGQVEIELPVPD----NCQSLFSVKSSQIE
        Q E EA L  VGKLIQ+P  FMK  P  NRPSLQTREL K          T    L TLSVLRDNDAV     VEIELPVPD    + +S  S  S+ +E
Subjt:  QDEFEAPLSMVGKLIQFPMPFMKNAPIENRPSLQTRELAKAPEAIWYRVHTGYIPLLTLSVLRDNDAVVSVGQVEIELPVPD----NCQSLFSVKSSQIE

Query:  FQYVGGVVHRVCSTIQQ------------GQQVSLEE
          +    V   C    Q            GQQ SLEE
Subjt:  FQYVGGVVHRVCSTIQQ------------GQQVSLEE

TrEMBL top hitse value%identityAlignment
A0A5A7SPZ6 DNA/RNA polymerases superfamily protein1.6e-1145.37Show/hide
Query:  ELAKAPEAIWYRVHTGYIPLLTLSVLRDNDAVVSVGQVEIELPVPDNCQSLFSVKSSQIEFQYVGGVVHRVCSTIQQGQQVSLEEDDVRWLHAISRTKLA
        E+   PEA  YRVHTGY+PLLTLSVLRDNDA+     VEIE  VP+         +S   F      +    ST+   +Q+S+E+  V  LH + ++KLA
Subjt:  ELAKAPEAIWYRVHTGYIPLLTLSVLRDNDAVVSVGQVEIELPVPDNCQSLFSVKSSQIEFQYVGGVVHRVCSTIQQGQQVSLEEDDVRWLHAISRTKLA

Query:  GRSGGGVT
        G  GGGVT
Subjt:  GRSGGGVT

A0A5A7T223 Reverse transcriptase6.1e-1145.99Show/hide
Query:  QDEFEAPLSMVGKLIQFPMPFMKNAPIENRPSLQTRELAKAPEAIWYRVHTGYIPLLTLSVLRDNDAVVSVGQVEIELPVPD----NCQSLFSVKSSQIE
        Q E EA L  VGKLIQ+P  FMK  P  NRPSLQTREL K          T    L TLSVLRDNDAV     VEIELPVPD    + +S  S  S+ +E
Subjt:  QDEFEAPLSMVGKLIQFPMPFMKNAPIENRPSLQTRELAKAPEAIWYRVHTGYIPLLTLSVLRDNDAVVSVGQVEIELPVPD----NCQSLFSVKSSQIE

Query:  FQYVGGVVHRVCSTIQQ------------GQQVSLEE
          +    V   C    Q            GQQ SLEE
Subjt:  FQYVGGVVHRVCSTIQQ------------GQQVSLEE

A0A5A7TPS6 Retrotrans_gag domain-containing protein7.2e-1238.6Show/hide
Query:  QDEFEAPLSMVGKLIQFPMPFMKNAPIENRPSLQTRELAKAPEAIWYRVHTGYIPLLTLSVLRDNDAVVSVG-----------QVEIELPVPD-------
        Q E EA   MVGKLIQ+P   MK  P  NRPSLQT EL K          T    L TLSVL DND VVS G           QVEIELPVPD       
Subjt:  QDEFEAPLSMVGKLIQFPMPFMKNAPIENRPSLQTRELAKAPEAIWYRVHTGYIPLLTLSVLRDNDAVVSVG-----------QVEIELPVPD-------

Query:  ----------NCQSLFSVKSSQIEFQYVGGVVHRVCSTIQQGQQVSLEEDDVRWLHAISRTKLAGRSGGGV
                  +C    S+    +   Y    V        +G    +  DDV  +HA+ + K AG  GGGV
Subjt:  ----------NCQSLFSVKSSQIEFQYVGGVVHRVCSTIQQGQQVSLEEDDVRWLHAISRTKLAGRSGGGV

A0A5D3BC77 CCHC-type domain-containing protein8.8e-1035.93Show/hide
Query:  QDEFEAPLSMVGKLIQFPMPFMKNAPIENRPSLQTRELAKA------PEAIWYRVHTG-----YIPLLTLSVLRDNDAVVSVG-----------QVEIEL
        Q E EA   +V KLIQ+P  FMK  PI NR SLQ  EL K        E +  R++         PL TLSVLRDN+A V +            +V  + 
Subjt:  QDEFEAPLSMVGKLIQFPMPFMKNAPIENRPSLQTRELAKA------PEAIWYRVHTG-----YIPLLTLSVLRDNDAVVSVG-----------QVEIEL

Query:  PVPD-NCQSLFSVKSSQIEFQYVGGVVHRVCSTIQQGQQVSLEEDDVRWLHAISRTKLAGRSGGGVT
        PV   +C S   +    +   Y    V        +G    +  DDV WLHA+ R K  G  GGGVT
Subjt:  PVPD-NCQSLFSVKSSQIEFQYVGGVVHRVCSTIQQGQQVSLEEDDVRWLHAISRTKLAGRSGGGVT

A0A5D3BV68 Reverse transcriptase6.1e-1145.99Show/hide
Query:  QDEFEAPLSMVGKLIQFPMPFMKNAPIENRPSLQTRELAKAPEAIWYRVHTGYIPLLTLSVLRDNDAVVSVGQVEIELPVPD----NCQSLFSVKSSQIE
        Q E EA L  VGKLIQ+P  FMK  P  NRPSLQTREL K          T    L TLSVLRDNDAV     VEIELPVPD    + +S  S  S+ +E
Subjt:  QDEFEAPLSMVGKLIQFPMPFMKNAPIENRPSLQTRELAKAPEAIWYRVHTGYIPLLTLSVLRDNDAVVSVGQVEIELPVPD----NCQSLFSVKSSQIE

Query:  FQYVGGVVHRVCSTIQQ------------GQQVSLEE
          +    V   C    Q            GQQ SLEE
Subjt:  FQYVGGVVHRVCSTIQQ------------GQQVSLEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTATGTGAGTTTGATCTCGAAAGGGACTGTAAACCCGAGACTTCCCTTGGATTATTTGCTCTTGGTGTACAGGATGAATTTGAAGCTCCACTTAGTATGGTTGGAAA
GCTTATTCAATTTCCAATGCCTTTCATGAAGAATGCGCCAATAGAAAATAGGCCGAGTCTACAGACCAGGGAACTAGCCAAGGCTCCCGAGGCTATATGGTACCGTGTGC
ACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGTTGGGCAGGTAGAGATCGAGCTCCCGGTGCCTGATAACTGCCAAAGT
CTGTTTTCTGTTAAAAGCTCCCAGATCGAGTTCCAGTACGTGGGTGGAGTTGTACACCGAGTCTGTTCAACGATTCAGCAGGGTCAACAGGTATCGTTAGAGGAGGACGA
TGTCCGTTGGCTTCACGCCATCTCCCGGACTAAGCTAGCAGGTAGATCGGGAGGGGGTGTGACAGGGATAGACGATATCGGTTCTCATAAAGGTGCTGGAAGGTTGCCCA
GTCAGTTTCAGGGTCAAAACAACCGGTTAGGTGCGAAGAAGACTCGTCAACAACGACCCGCGTGCGACTCGGAACGGCCTCTGTTTTTCCAGAAATGCGGTCGCATTTCA
TTTTTGCCTTCCCAGAAATGTGGTCGCATTTCTGGGGAATTCCAGCTTTTCGTCTGTCCATCAGGTCCCACCGGTAGCTCTATAAGGGCGTTGAGAGAGATCAAGACTTT
TTCGCTGCTGGAATTTTCTGCAAATAGTAAGGGAAAAGGCGAAACGGATCAAGATCGTCTACAAAGGTATTCCAAGTCAGTTTCCAGCTTTGGGCGTCTCGATGCTAGGC
AGCTGAAGCAAAAATCTGGAAACTGGGACAGCGTCTCGACGCTGAGACATTGTGGGCAACAAGAATACTACACTGAAATTGGGGGTTTTGGGAGAGGTTTGGGAGCCTTG
TTGAAGATCTTAGAGCTCGGGATCGATGGAGGTCACCATGGGATCGAGGAGACCGACACTTTTATGAGCATTTCTCTTCCCTTTTCCTTTCCTTTTAGTTTTTTTGGGTG
GCCCTTTAGGGAATCTGAGCCCGAAGAACCAACACCATCGTTCAATTTTTCCTTTTCAAATTATCCCCCTTTAGAAGAAAAATCTCCCCTAGAAAATTTGCTTGAAGACT
ACATTGAGGATAATAGAGCCACTAAATTAGCTCTAGAAAAATCCCTAGGGAGATTGCATCCCCAAGAGGCTGAGAGTGAAGTGCAATCCACTTCCATAGAAGAAAAGTCT
TCCTTAGAGAGCTTGCTTGAAAATTTTATTCAGGAGTCTAGAGCCATGAATTTAGAACTAGAAAAATCTATGGAGAAACTCCAAACCGAAAGGGAAGTTAGGGAAGTAGG
ATCCACTTCCATAGGATGTCTAGTGAGTCATGTGGCCACTGATTCATTAGCACCTATTCAGGAGCCTAATTCTTTCAATTTTGCTGAGTATGAGCATATAGGGGTGAGCT
GTGTAGATAGTAAGGAAGAATTGGAGAGCTTTAGCACCCACCAAGAACATGTTTGTGAGGAAGAAAAAGAAATTGAGCCTATAGTGTTTGAGGAAATTCAGGAGGTAGAG
TTTAAGGTTGAAAGGCTTTTGTCTGTTCTATCCTCTCCATCCTCTCTTGATAATGAGTGTTCTTTTTCTTATTCTCACGAGTCTGTGTCAGACTTGCAGAAAATGCTATT
TGAGGAAGAAATCAAAGAGGAAATCATAGATGATAAGAATCTGCAATATACGACAGAGGATGAGACTGCAAAGTCTACATTCAAAGCAGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTATGTGAGTTTGATCTCGAAAGGGACTGTAAACCCGAGACTTCCCTTGGATTATTTGCTCTTGGTGTACAGGATGAATTTGAAGCTCCACTTAGTATGGTTGGAAA
GCTTATTCAATTTCCAATGCCTTTCATGAAGAATGCGCCAATAGAAAATAGGCCGAGTCTACAGACCAGGGAACTAGCCAAGGCTCCCGAGGCTATATGGTACCGTGTGC
ACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGTTGGGCAGGTAGAGATCGAGCTCCCGGTGCCTGATAACTGCCAAAGT
CTGTTTTCTGTTAAAAGCTCCCAGATCGAGTTCCAGTACGTGGGTGGAGTTGTACACCGAGTCTGTTCAACGATTCAGCAGGGTCAACAGGTATCGTTAGAGGAGGACGA
TGTCCGTTGGCTTCACGCCATCTCCCGGACTAAGCTAGCAGGTAGATCGGGAGGGGGTGTGACAGGGATAGACGATATCGGTTCTCATAAAGGTGCTGGAAGGTTGCCCA
GTCAGTTTCAGGGTCAAAACAACCGGTTAGGTGCGAAGAAGACTCGTCAACAACGACCCGCGTGCGACTCGGAACGGCCTCTGTTTTTCCAGAAATGCGGTCGCATTTCA
TTTTTGCCTTCCCAGAAATGTGGTCGCATTTCTGGGGAATTCCAGCTTTTCGTCTGTCCATCAGGTCCCACCGGTAGCTCTATAAGGGCGTTGAGAGAGATCAAGACTTT
TTCGCTGCTGGAATTTTCTGCAAATAGTAAGGGAAAAGGCGAAACGGATCAAGATCGTCTACAAAGGTATTCCAAGTCAGTTTCCAGCTTTGGGCGTCTCGATGCTAGGC
AGCTGAAGCAAAAATCTGGAAACTGGGACAGCGTCTCGACGCTGAGACATTGTGGGCAACAAGAATACTACACTGAAATTGGGGGTTTTGGGAGAGGTTTGGGAGCCTTG
TTGAAGATCTTAGAGCTCGGGATCGATGGAGGTCACCATGGGATCGAGGAGACCGACACTTTTATGAGCATTTCTCTTCCCTTTTCCTTTCCTTTTAGTTTTTTTGGGTG
GCCCTTTAGGGAATCTGAGCCCGAAGAACCAACACCATCGTTCAATTTTTCCTTTTCAAATTATCCCCCTTTAGAAGAAAAATCTCCCCTAGAAAATTTGCTTGAAGACT
ACATTGAGGATAATAGAGCCACTAAATTAGCTCTAGAAAAATCCCTAGGGAGATTGCATCCCCAAGAGGCTGAGAGTGAAGTGCAATCCACTTCCATAGAAGAAAAGTCT
TCCTTAGAGAGCTTGCTTGAAAATTTTATTCAGGAGTCTAGAGCCATGAATTTAGAACTAGAAAAATCTATGGAGAAACTCCAAACCGAAAGGGAAGTTAGGGAAGTAGG
ATCCACTTCCATAGGATGTCTAGTGAGTCATGTGGCCACTGATTCATTAGCACCTATTCAGGAGCCTAATTCTTTCAATTTTGCTGAGTATGAGCATATAGGGGTGAGCT
GTGTAGATAGTAAGGAAGAATTGGAGAGCTTTAGCACCCACCAAGAACATGTTTGTGAGGAAGAAAAAGAAATTGAGCCTATAGTGTTTGAGGAAATTCAGGAGGTAGAG
TTTAAGGTTGAAAGGCTTTTGTCTGTTCTATCCTCTCCATCCTCTCTTGATAATGAGTGTTCTTTTTCTTATTCTCACGAGTCTGTGTCAGACTTGCAGAAAATGCTATT
TGAGGAAGAAATCAAAGAGGAAATCATAGATGATAAGAATCTGCAATATACGACAGAGGATGAGACTGCAAAGTCTACATTCAAAGCAGATTAA
Protein sequenceShow/hide protein sequence
MLCEFDLERDCKPETSLGLFALGVQDEFEAPLSMVGKLIQFPMPFMKNAPIENRPSLQTRELAKAPEAIWYRVHTGYIPLLTLSVLRDNDAVVSVGQVEIELPVPDNCQS
LFSVKSSQIEFQYVGGVVHRVCSTIQQGQQVSLEEDDVRWLHAISRTKLAGRSGGGVTGIDDIGSHKGAGRLPSQFQGQNNRLGAKKTRQQRPACDSERPLFFQKCGRIS
FLPSQKCGRISGEFQLFVCPSGPTGSSIRALREIKTFSLLEFSANSKGKGETDQDRLQRYSKSVSSFGRLDARQLKQKSGNWDSVSTLRHCGQQEYYTEIGGFGRGLGAL
LKILELGIDGGHHGIEETDTFMSISLPFSFPFSFFGWPFRESEPEEPTPSFNFSFSNYPPLEEKSPLENLLEDYIEDNRATKLALEKSLGRLHPQEAESEVQSTSIEEKS
SLESLLENFIQESRAMNLELEKSMEKLQTEREVREVGSTSIGCLVSHVATDSLAPIQEPNSFNFAEYEHIGVSCVDSKEELESFSTHQEHVCEEEKEIEPIVFEEIQEVE
FKVERLLSVLSSPSSLDNECSFSYSHESVSDLQKMLFEEEIKEEIIDDKNLQYTTEDETAKSTFKAD