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Spg026361 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026361
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold13:17168500..17171134
RNA-Seq ExpressionSpg026361
SyntenySpg026361
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037787.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.8e-0854.05Show/hide
Query:  VYKLNPKLYLLEIELPVPDTLPTSAESSITSSSSTYQEGQWVSLEEDDVRWLHAIFRTKLAGGLGGGVTLYTPE
        V+KLN KLYL+EIELPV DTLPTSAESS ++S S         +  DDV WL  +FR K  GG GG   + T E
Subjt:  VYKLNPKLYLLEIELPVPDTLPTSAESSITSSSSTYQEGQWVSLEEDDVRWLHAIFRTKLAGGLGGGVTLYTPE

KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.3e-0835.9Show/hide
Query:  VLFGLSYTEGTKRAQDFR-----AKQEDLWCFEHYGVYKLNPKLYLLEIELPVPDTLPTSAESSITSSSSTYQE--------------------------
        VLFGL Y EGTKR +  R      + +    F    +  L     ++EIELPVPDTLPTSAESS  S+SST+ E                          
Subjt:  VLFGLSYTEGTKRAQDFR-----AKQEDLWCFEHYGVYKLNPKLYLLEIELPVPDTLPTSAESSITSSSSTYQE--------------------------

Query:  ----GQWVSLEEDDVRWLHAIFRTKLAGGLGGGVTLYTPECSKTQRKLEILLEAPS
            G    +  D+V WLHA+F  K AGG GGGV    P  S+ +R+ +  ++ P+
Subjt:  ----GQWVSLEEDDVRWLHAIFRTKLAGGLGGGVTLYTPECSKTQRKLEILLEAPS

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]1.8e-1035.52Show/hide
Query:  VGKVHAKPAIAESEFNLSTSSVLFGLSYTEGTK-RAQDFRAKQEDLWCFE--------------HYGVYKLNPKLYLLEIELPVPDTLPTSAESSITSSS
        + KV+AKPAIAES  N     VLFGLSY E  +  +  F +K      F               H G  KL+     +EIELPVPDTLPTSAESS ++SS
Subjt:  VGKVHAKPAIAESEFNLSTSSVLFGLSYTEGTK-RAQDFRAKQEDLWCFE--------------HYGVYKLNPKLYLLEIELPVPDTLPTSAESSITSSS

Query:  STYQ--------------------------EGQWVSLEEDDVRWLHAIFRTKLAGGLGGGVTLYTPECSKTQRKLEILLEAPS
        +  +                          EG    +  DD+ WLHA+F  K AG  GGGV    P  S+ +R+ +  ++ P+
Subjt:  STYQ--------------------------EGQWVSLEEDDVRWLHAIFRTKLAGGLGGGVTLYTPECSKTQRKLEILLEAPS

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]2.6e-0948.35Show/hide
Query:  LLEIELPVPDTLPTSAESSITSSSS--------TYQEGQWVS--LEEDDVRWLHAIFRTKLAGGLGGGVTLYTPECSKTQRKLEILLEAPS
        ++EIELPVPDTLPTSAESS ++SS+         + E  W++  + EDDV WLHA+FR K AGG GGGV    P  SK +R  +  ++ P+
Subjt:  LLEIELPVPDTLPTSAESSITSSSS--------TYQEGQWVS--LEEDDVRWLHAIFRTKLAGGLGGGVTLYTPECSKTQRKLEILLEAPS

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]2.6e-0948.35Show/hide
Query:  LLEIELPVPDTLPTSAESSITSSSS--------TYQEGQWVS--LEEDDVRWLHAIFRTKLAGGLGGGVTLYTPECSKTQRKLEILLEAPS
        ++EIELPVPDTLPTSAESS ++SS+         + E  W++  + EDDV WLHA+FR K AGG GGGV    P  SK +R  +  ++ P+
Subjt:  LLEIELPVPDTLPTSAESSITSSSS--------TYQEGQWVS--LEEDDVRWLHAIFRTKLAGGLGGGVTLYTPECSKTQRKLEILLEAPS

TrEMBL top hitse value%identityAlignment
A0A5A7U9X4 DNA/RNA polymerases superfamily protein6.3e-0935.9Show/hide
Query:  VLFGLSYTEGTKRAQDFR-----AKQEDLWCFEHYGVYKLNPKLYLLEIELPVPDTLPTSAESSITSSSSTYQE--------------------------
        VLFGL Y EGTKR +  R      + +    F    +  L     ++EIELPVPDTLPTSAESS  S+SST+ E                          
Subjt:  VLFGLSYTEGTKRAQDFR-----AKQEDLWCFEHYGVYKLNPKLYLLEIELPVPDTLPTSAESSITSSSSTYQE--------------------------

Query:  ----GQWVSLEEDDVRWLHAIFRTKLAGGLGGGVTLYTPECSKTQRKLEILLEAPS
            G    +  D+V WLHA+F  K AGG GGGV    P  S+ +R+ +  ++ P+
Subjt:  ----GQWVSLEEDDVRWLHAIFRTKLAGGLGGGVTLYTPECSKTQRKLEILLEAPS

A0A5A7UAH6 CCHC-type domain-containing protein8.8e-1135.52Show/hide
Query:  VGKVHAKPAIAESEFNLSTSSVLFGLSYTEGTK-RAQDFRAKQEDLWCFE--------------HYGVYKLNPKLYLLEIELPVPDTLPTSAESSITSSS
        + KV+AKPAIAES  N     VLFGLSY E  +  +  F +K      F               H G  KL+     +EIELPVPDTLPTSAESS ++SS
Subjt:  VGKVHAKPAIAESEFNLSTSSVLFGLSYTEGTK-RAQDFRAKQEDLWCFE--------------HYGVYKLNPKLYLLEIELPVPDTLPTSAESSITSSS

Query:  STYQ--------------------------EGQWVSLEEDDVRWLHAIFRTKLAGGLGGGVTLYTPECSKTQRKLEILLEAPS
        +  +                          EG    +  DD+ WLHA+F  K AG  GGGV    P  S+ +R+ +  ++ P+
Subjt:  STYQ--------------------------EGQWVSLEEDDVRWLHAIFRTKLAGGLGGGVTLYTPECSKTQRKLEILLEAPS

A0A5A7VMG9 Reverse transcriptase1.3e-0948.35Show/hide
Query:  LLEIELPVPDTLPTSAESSITSSSS--------TYQEGQWVS--LEEDDVRWLHAIFRTKLAGGLGGGVTLYTPECSKTQRKLEILLEAPS
        ++EIELPVPDTLPTSAESS ++SS+         + E  W++  + EDDV WLHA+FR K AGG GGGV    P  SK +R  +  ++ P+
Subjt:  LLEIELPVPDTLPTSAESSITSSSS--------TYQEGQWVS--LEEDDVRWLHAIFRTKLAGGLGGGVTLYTPECSKTQRKLEILLEAPS

A0A5D3DVK1 Ty3-gypsy retrotransposon protein1.8e-0854.05Show/hide
Query:  VYKLNPKLYLLEIELPVPDTLPTSAESSITSSSSTYQEGQWVSLEEDDVRWLHAIFRTKLAGGLGGGVTLYTPE
        V+KLN KLYL+EIELPV DTLPTSAESS ++S S         +  DDV WL  +FR K  GG GG   + T E
Subjt:  VYKLNPKLYLLEIELPVPDTLPTSAESSITSSSSTYQEGQWVSLEEDDVRWLHAIFRTKLAGGLGGGVTLYTPE

A0A5D3DX39 Reverse transcriptase1.3e-0948.35Show/hide
Query:  LLEIELPVPDTLPTSAESSITSSSS--------TYQEGQWVS--LEEDDVRWLHAIFRTKLAGGLGGGVTLYTPECSKTQRKLEILLEAPS
        ++EIELPVPDTLPTSAESS ++SS+         + E  W++  + EDDV WLHA+FR K AGG GGGV    P  SK +R  +  ++ P+
Subjt:  LLEIELPVPDTLPTSAESSITSSSS--------TYQEGQWVS--LEEDDVRWLHAIFRTKLAGGLGGGVTLYTPECSKTQRKLEILLEAPS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAATTTCGTGGTTTTGAGGTTGAAGAAGGTAGGAAAAGTTCATGCAAAGCCAGCCATAGCAGAATCTGAGTTCAACCTGTCAACCTCTAGTGTTTTATTCGGTTT
GAGCTACACAGAAGGAACTAAGAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTGTTTTGAGCATTATGGGGTGTACAAGTTGAATCCGAAGCTCTATTTGT
TAGAGATCGAGCTCCCAGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCATAACAAGCTCCAGTTCTACGTATCAGGAGGGTCAATGGGTATCGTTAGAGGAGGAC
GATGTTCGTTGGCTTCACGCCATCTTTCGGACTAAGCTAGCAGGTGGTCTGGGAGGGGGTGTGACATTGTATACACCAGAATGCTCGAAAACCCAGAGAAAACTAGAGAT
CCTCCTGGAAGCTCCTTCTTATTCTTCCTTCACTCTCTCCTTCGAATGCTCTGAAGTTTTGATGGAAAAAGATGGAGAAAATGGGCTGAGAAGACCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAATTTCGTGGTTTTGAGGTTGAAGAAGGTAGGAAAAGTTCATGCAAAGCCAGCCATAGCAGAATCTGAGTTCAACCTGTCAACCTCTAGTGTTTTATTCGGTTT
GAGCTACACAGAAGGAACTAAGAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTGTTTTGAGCATTATGGGGTGTACAAGTTGAATCCGAAGCTCTATTTGT
TAGAGATCGAGCTCCCAGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCATAACAAGCTCCAGTTCTACGTATCAGGAGGGTCAATGGGTATCGTTAGAGGAGGAC
GATGTTCGTTGGCTTCACGCCATCTTTCGGACTAAGCTAGCAGGTGGTCTGGGAGGGGGTGTGACATTGTATACACCAGAATGCTCGAAAACCCAGAGAAAACTAGAGAT
CCTCCTGGAAGCTCCTTCTTATTCTTCCTTCACTCTCTCCTTCGAATGCTCTGAAGTTTTGATGGAAAAAGATGGAGAAAATGGGCTGAGAAGACCTTAA
Protein sequenceShow/hide protein sequence
MKNFVVLRLKKVGKVHAKPAIAESEFNLSTSSVLFGLSYTEGTKRAQDFRAKQEDLWCFEHYGVYKLNPKLYLLEIELPVPDTLPTSAESSITSSSSTYQEGQWVSLEED
DVRWLHAIFRTKLAGGLGGGVTLYTPECSKTQRKLEILLEAPSYSSFTLSFECSEVLMEKDGENGLRRP