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Spg026367 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026367
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold13:16666154..16674717
RNA-Seq ExpressionSpg026367
SyntenySpg026367
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR036397 - Ribonuclease H superfamily
IPR040256 - Uncharacterized protein At4g02000-like
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4349800.1 hypothetical protein F8388_001078 [Cannabis sativa]2.3e-1546.74Show/hide
Query:  LLILEEPTKAAEKIGNSLGEFLELDCNREEFGWGNSTRIQVIMDINMPLRRGFMLKAVGIEGECWITIRYERLPDFCFKCGRIGHGIRECAS
        L  L +    AE +GN +GEFLE+  +    GWG   RI+V + +  PL RG M+K   I  E WI  RYERLP FCF+CGR+GH   +C S
Subjt:  LLILEEPTKAAEKIGNSLGEFLELDCNREEFGWGNSTRIQVIMDINMPLRRGFMLKAVGIEGECWITIRYERLPDFCFKCGRIGHGIRECAS

KAF4355016.1 hypothetical protein F8388_026517 [Cannabis sativa]3.3e-1444.44Show/hide
Query:  LLILEEPTKAAEKIGNSLGEFLELDCNREEFGWGNSTRIQVIMDINMPLRRGFMLKAVGIEGECWITIRYERLPDFCFKCGRIGHGIREC
        L  L +     +KIG+ +GEFLE+D      GWG   RI+V MD   PL RG  LK + +    W+  +YE LPDFC KCGR+GH    C
Subjt:  LLILEEPTKAAEKIGNSLGEFLELDCNREEFGWGNSTRIQVIMDINMPLRRGFMLKAVGIEGECWITIRYERLPDFCFKCGRIGHGIREC

KAF4361813.1 hypothetical protein G4B88_015941 [Cannabis sativa]1.9e-1445.65Show/hide
Query:  LLILEEPTKAAEKIGNSLGEFLELDCNREEFGWGNSTRIQVIMDINMPLRRGFMLKAVGIEGECWITIRYERLPDFCFKCGRIGHGIRECAS
        L  L +    AE +GN +GEFLE+  +    GWG   RI+V + +  PL  G M+K   I  E WI  RYERLP FCF+CGR+GH   +C S
Subjt:  LLILEEPTKAAEKIGNSLGEFLELDCNREEFGWGNSTRIQVIMDINMPLRRGFMLKAVGIEGECWITIRYERLPDFCFKCGRIGHGIRECAS

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]1.4e-1734.1Show/hide
Query:  AEKIGNSLGEFLELDCNREEFGWGNSTRIQVIMDINMPLRRGFMLKAVGIEGECWITIRYERLPDFCFKCGRIGHGIREC-----ASQENEDAPE-----
        A ++GN++G F+++DCN + F WG S RI+V++DI  PLRRG  +   G  G CWI I+YERLPDFC+ CG IGH   +C     A+Q++  A       
Subjt:  AEKIGNSLGEFLELDCNREEFGWGNSTRIQVIMDINMPLRRGFMLKAVGIEGECWITIRYERLPDFCFKCGRIGHGIREC-----ASQENEDAPE-----

Query:  -------------RNGLENNKQQSTGNGGMRERNEPI-----QMNDQ-NEDQTKKEEVPNTSGGAFGRVENQG
                     R G    ++ S G+  M  +   +     Q+++Q N+D  + +     +G A GR    G
Subjt:  -------------RNGLENNKQQSTGNGGMRERNEPI-----QMNDQ-NEDQTKKEEVPNTSGGAFGRVENQG

XP_042958115.1 uncharacterized protein LOC122293643 [Carya illinoinensis]3.0e-1540.91Show/hide
Query:  KAAEKIGNSLGEFLELDCNREEFGWGNSTRIQVIMDINMPLRRGFMLKAVGIEGECWITIRYERLPDFCFKCGRIGHGIRECASQENE
        K   KIGNS+G   E+D  ++E  WG   +I++++D+  PL RG  +  +G  G CW+   YERLP FC+ CGR+GH  ++C+  +N+
Subjt:  KAAEKIGNSLGEFLELDCNREEFGWGNSTRIQVIMDINMPLRRGFMLKAVGIEGECWITIRYERLPDFCFKCGRIGHGIRECASQENE

TrEMBL top hitse value%identityAlignment
A0A6J1DU55 uncharacterized protein LOC1110231357.0e-1834.1Show/hide
Query:  AEKIGNSLGEFLELDCNREEFGWGNSTRIQVIMDINMPLRRGFMLKAVGIEGECWITIRYERLPDFCFKCGRIGHGIREC-----ASQENEDAPE-----
        A ++GN++G F+++DCN + F WG S RI+V++DI  PLRRG  +   G  G CWI I+YERLPDFC+ CG IGH   +C     A+Q++  A       
Subjt:  AEKIGNSLGEFLELDCNREEFGWGNSTRIQVIMDINMPLRRGFMLKAVGIEGECWITIRYERLPDFCFKCGRIGHGIREC-----ASQENEDAPE-----

Query:  -------------RNGLENNKQQSTGNGGMRERNEPI-----QMNDQ-NEDQTKKEEVPNTSGGAFGRVENQG
                     R G    ++ S G+  M  +   +     Q+++Q N+D  + +     +G A GR    G
Subjt:  -------------RNGLENNKQQSTGNGGMRERNEPI-----QMNDQ-NEDQTKKEEVPNTSGGAFGRVENQG

A0A7J6DVQ6 CCHC-type domain-containing protein1.1e-1546.74Show/hide
Query:  LLILEEPTKAAEKIGNSLGEFLELDCNREEFGWGNSTRIQVIMDINMPLRRGFMLKAVGIEGECWITIRYERLPDFCFKCGRIGHGIRECAS
        L  L +    AE +GN +GEFLE+  +    GWG   RI+V + +  PL RG M+K   I  E WI  RYERLP FCF+CGR+GH   +C S
Subjt:  LLILEEPTKAAEKIGNSLGEFLELDCNREEFGWGNSTRIQVIMDINMPLRRGFMLKAVGIEGECWITIRYERLPDFCFKCGRIGHGIRECAS

A0A803NM27 Uncharacterized protein5.5e-1538.97Show/hide
Query:  HLAGLCPQAIYP------ILYPKWF----LLILEEPTKAAEKIGNSLGEFLELDCNREEFGWGNSTRIQVIMDINMPLRRGFMLKAVGIEGECWITIRYE
        H+  L P A++       I  P W     L  L +    A+ +GN +GEF+E+  +    GWG   R +V MDI  PL RG M+    I+ E W+  RYE
Subjt:  HLAGLCPQAIYP------ILYPKWF----LLILEEPTKAAEKIGNSLGEFLELDCNREEFGWGNSTRIQVIMDINMPLRRGFMLKAVGIEGECWITIRYE

Query:  RLPDFCFKCGRIGHGIRECASQ-ENEDAPERNGLEN
        RLPD+C +CGRIGH   +C    EN D    NG+E+
Subjt:  RLPDFCFKCGRIGHGIRECASQ-ENEDAPERNGLEN

A0A803P119 Uncharacterized protein2.5e-1542.22Show/hide
Query:  LLILEEPTKAAEKIGNSLGEFLELDCNREEFGWGNSTRIQVIMDINMPLRRGFMLKAVGIEGECWITIRYERLPDFCFKCGRIGHGIREC
        L  L +    A  IG+ +GEFL++D +  E GWG   RI++ +D+  PL RG +LK  G+  + W+ ++YE+LPD C+KCGR+GH    C
Subjt:  LLILEEPTKAAEKIGNSLGEFLELDCNREEFGWGNSTRIQVIMDINMPLRRGFMLKAVGIEGECWITIRYERLPDFCFKCGRIGHGIREC

A0A803PUL2 Uncharacterized protein2.5e-1543.48Show/hide
Query:  LLILEEPTKAAEKIGNSLGEFLELDCNREEFGWGNSTRIQVIMDINMPLRRGFMLKAVGIEGECWITIRYERLPDFCFKCGRIGHGIRECAS
        L  L +    AE +GN +GEFLE+  +    GWG+  R++V +  N PL RG M++   I+ E W+  RYERLP+FCF+CGR+GH    C +
Subjt:  LLILEEPTKAAEKIGNSLGEFLELDCNREEFGWGNSTRIQVIMDINMPLRRGFMLKAVGIEGECWITIRYERLPDFCFKCGRIGHGIRECAS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G36228.1 nucleic acid binding;zinc ion binding1.9e-0429.46Show/hide
Query:  KAAEKIGNSLGEFLELDCNREEFGWGNSTRIQVIMDINMPLRRGFMLKAVGIEGECWITIRYERLPDFCFKCGRIGHGIREC---ASQENED-------A
        +  E I ++LGE + +D N E        R++V MD   PLR    ++    E    I   YE+L   C  C R+ H +  C     QE  D       +
Subjt:  KAAEKIGNSLGEFLELDCNREEFGWGNSTRIQVIMDINMPLRRGFMLKAVGIEGECWITIRYERLPDFCFKCGRIGHGIREC---ASQENED-------A

Query:  PERNGLENNKQQ
        PER   E++  Q
Subjt:  PERNGLENNKQQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGGGCGGTGCGCCTTTGTTCACGTTCTGGAGTCAGCACTTAAGGGAACAACCTCTCTACTATCCCTAAAGACGGGTAGGAGTGAATTCCATCTTGCAGGACTATG
TCCCCAAGCTATCTACCCGATCTTATACCCAAAGTGGTTCTTACTGATTCTTGAAGAGCCAACGAAGGCAGCAGAGAAGATAGGGAACAGCCTGGGTGAATTCTTGGAGT
TAGACTGCAACAGAGAAGAATTCGGGTGGGGAAATAGCACCAGAATTCAGGTTATTATGGATATTAATATGCCTTTACGTAGAGGTTTCATGTTAAAGGCGGTAGGAATA
GAGGGGGAATGCTGGATTACAATTCGCTATGAAAGACTTCCCGATTTCTGTTTCAAATGTGGGCGTATTGGACATGGTATAAGAGAATGCGCATCTCAAGAAAATGAAGA
TGCTCCAGAAAGGAATGGATTAGAGAATAACAAGCAACAAAGTACTGGAAACGGTGGGATGAGGGAGAGAAATGAACCAATACAGATGAATGACCAAAATGAGGACCAAA
CTAAGAAAGAGGAAGTACCTAATACCTCAGGAGGAGCGTTTGGTAGAGTTGAGAATCAGGGGGCAATGGTTGTGTCCTCACCTGATCTTGGTACTGGTGAGAGTTCTTCA
GGGGGCGGGGACTTTAATGAGATTTTAGATGATGAAGAGAAGAGTTGTGGGCCGCGAAGAGCAAGAAAACAGCTTGAAGACTTTAGGCATGCGCGCAATCATTGCAAATT
AAAGGATATGGAATTTTTAGGAAGTATTTTCACATGGAGAAGTAATAGAAGAGGAGTTCAGGTTTGGGAGAGGCCTAAGCAGGGGAATCAACAGCCTGTTAGGTCTCGAA
CTCCCTTAAACTTGTGGAAAGTAAATGTGGACGCGGCATGGGACACTCCTTCGACTGGCATTGGAATTGTTTGTAGAGATCCTCAAGGGGTTATCAAAGGAGTCTCGCTA
ATCTCTCATGATTTAGAACACACTCCTCCAATGGCTGAGTTATGGGCAATTTACGAAGGAGTTAAGCTTGCATTCTCTTTGGGAAGTTATGATGTGAAGGTGGAATCAGA
TTGTACTCGGGCCGTTAAGTTAGCTTCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGAGGGCGGTGCGCCTTTGTTCACGTTCTGGAGTCAGCACTTAAGGGAACAACCTCTCTACTATCCCTAAAGACGGGTAGGAGTGAATTCCATCTTGCAGGACTATG
TCCCCAAGCTATCTACCCGATCTTATACCCAAAGTGGTTCTTACTGATTCTTGAAGAGCCAACGAAGGCAGCAGAGAAGATAGGGAACAGCCTGGGTGAATTCTTGGAGT
TAGACTGCAACAGAGAAGAATTCGGGTGGGGAAATAGCACCAGAATTCAGGTTATTATGGATATTAATATGCCTTTACGTAGAGGTTTCATGTTAAAGGCGGTAGGAATA
GAGGGGGAATGCTGGATTACAATTCGCTATGAAAGACTTCCCGATTTCTGTTTCAAATGTGGGCGTATTGGACATGGTATAAGAGAATGCGCATCTCAAGAAAATGAAGA
TGCTCCAGAAAGGAATGGATTAGAGAATAACAAGCAACAAAGTACTGGAAACGGTGGGATGAGGGAGAGAAATGAACCAATACAGATGAATGACCAAAATGAGGACCAAA
CTAAGAAAGAGGAAGTACCTAATACCTCAGGAGGAGCGTTTGGTAGAGTTGAGAATCAGGGGGCAATGGTTGTGTCCTCACCTGATCTTGGTACTGGTGAGAGTTCTTCA
GGGGGCGGGGACTTTAATGAGATTTTAGATGATGAAGAGAAGAGTTGTGGGCCGCGAAGAGCAAGAAAACAGCTTGAAGACTTTAGGCATGCGCGCAATCATTGCAAATT
AAAGGATATGGAATTTTTAGGAAGTATTTTCACATGGAGAAGTAATAGAAGAGGAGTTCAGGTTTGGGAGAGGCCTAAGCAGGGGAATCAACAGCCTGTTAGGTCTCGAA
CTCCCTTAAACTTGTGGAAAGTAAATGTGGACGCGGCATGGGACACTCCTTCGACTGGCATTGGAATTGTTTGTAGAGATCCTCAAGGGGTTATCAAAGGAGTCTCGCTA
ATCTCTCATGATTTAGAACACACTCCTCCAATGGCTGAGTTATGGGCAATTTACGAAGGAGTTAAGCTTGCATTCTCTTTGGGAAGTTATGATGTGAAGGTGGAATCAGA
TTGTACTCGGGCCGTTAAGTTAGCTTCGTGA
Protein sequenceShow/hide protein sequence
MRGRCAFVHVLESALKGTTSLLSLKTGRSEFHLAGLCPQAIYPILYPKWFLLILEEPTKAAEKIGNSLGEFLELDCNREEFGWGNSTRIQVIMDINMPLRRGFMLKAVGI
EGECWITIRYERLPDFCFKCGRIGHGIRECASQENEDAPERNGLENNKQQSTGNGGMRERNEPIQMNDQNEDQTKKEEVPNTSGGAFGRVENQGAMVVSSPDLGTGESSS
GGGDFNEILDDEEKSCGPRRARKQLEDFRHARNHCKLKDMEFLGSIFTWRSNRRGVQVWERPKQGNQQPVRSRTPLNLWKVNVDAAWDTPSTGIGIVCRDPQGVIKGVSL
ISHDLEHTPPMAELWAIYEGVKLAFSLGSYDVKVESDCTRAVKLAS