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Spg026374 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026374
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold13:18589114..18591087
RNA-Seq ExpressionSpg026374
SyntenySpg026374
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.4e-1049.5Show/hide
Query:  PRENRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRSSSSSTLQ---EGQRVS-------LEEDDVHWLHAIFRTELAGGPGGG
        PR NR SLQT +L KT                 VEIELP+PDTLPTSAESS S+SS+ L+   E   V        +  DDV WLHA+FR +  GGPGGG
Subjt:  PRENRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRSSSSSTLQ---EGQRVS-------LEEDDVHWLHAIFRTELAGGPGGG

Query:  V
        V
Subjt:  V

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]4.1e-1540.62Show/hide
Query:  EIAQAKVAIAEAEFNLSTSGFCFGLSYTEGTKSREPRICVVCVRGISGQIGWESRLHFFRPRENRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSS
        E   AK AIAE+  N       FGLSY E  +    R     +    G + +   L    PR NR +L T KL KTVEIELPVPDTLPTSAESS+S+SS+
Subjt:  EIAQAKVAIAEAEFNLSTSGFCFGLSYTEGTKSREPRICVVCVRGISGQIGWESRLHFFRPRENRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSS

Query:  TLQ--------------------------EGQRVSLEEDDVHWLHAIFRTELAGGPGGGV
         L+                          EG    +  DD+ WLHA+F  + AG PGGGV
Subjt:  TLQ--------------------------EGQRVSLEEDDVHWLHAIFRTELAGGPGGGV

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]3.9e-1354.08Show/hide
Query:  RLHFFRPRENRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRSSSSSTLQEGQRVSLEEDDVHWLHAIFRTELAGGPGGGVT
        +L+  RPR NR SLQT KL KT                 VEIELPVPDTLPTSAES  S+S ST        +  DDV WLHA+FR + AGGPGGGVT
Subjt:  RLHFFRPRENRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRSSSSSTLQEGQRVSLEEDDVHWLHAIFRTELAGGPGGGVT

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]4.7e-1138.65Show/hide
Query:  FGLSYTEGTK----SREPRICVVCVRGIS-GQIGWESRLHFFRPRENRSSLQTRKLAKTV---------------EIELPVPDTLPTSAESSRSSSSSTL
        F LSY EGTK    S +P   +V    +S  +I   ++  +  PR NR SLQT +L KTV                IELPVPDTLPTSAESS S+SS+ L
Subjt:  FGLSYTEGTK----SREPRICVVCVRGIS-GQIGWESRLHFFRPRENRSSLQTRKLAKTV---------------EIELPVPDTLPTSAESSRSSSSSTL

Query:  Q-----------------------------EGQRVSLEEDDVHWLHAIFRTELAGGPGGGVTS
        +                              G    +  DDV WLHA+FR +  GGPGGGVT+
Subjt:  Q-----------------------------EGQRVSLEEDDVHWLHAIFRTELAGGPGGGVTS

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.4e-1049.5Show/hide
Query:  PRENRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRSSSSSTLQ---EGQRVS-------LEEDDVHWLHAIFRTELAGGPGGG
        PR NR SLQT +L KT                 VEIELP+PDTLPTSAESS S+SS+ L+   E   V        +  DDV WLHA+FR +  GGPGGG
Subjt:  PRENRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRSSSSSTLQ---EGQRVS-------LEEDDVHWLHAIFRTELAGGPGGG

Query:  V
        V
Subjt:  V

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase6.7e-1149.5Show/hide
Query:  PRENRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRSSSSSTLQ---EGQRVS-------LEEDDVHWLHAIFRTELAGGPGGG
        PR NR SLQT +L KT                 VEIELP+PDTLPTSAESS S+SS+ L+   E   V        +  DDV WLHA+FR +  GGPGGG
Subjt:  PRENRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRSSSSSTLQ---EGQRVS-------LEEDDVHWLHAIFRTELAGGPGGG

Query:  V
        V
Subjt:  V

A0A5A7UAH6 CCHC-type domain-containing protein2.0e-1540.62Show/hide
Query:  EIAQAKVAIAEAEFNLSTSGFCFGLSYTEGTKSREPRICVVCVRGISGQIGWESRLHFFRPRENRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSS
        E   AK AIAE+  N       FGLSY E  +    R     +    G + +   L    PR NR +L T KL KTVEIELPVPDTLPTSAESS+S+SS+
Subjt:  EIAQAKVAIAEAEFNLSTSGFCFGLSYTEGTKSREPRICVVCVRGISGQIGWESRLHFFRPRENRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSS

Query:  TLQ--------------------------EGQRVSLEEDDVHWLHAIFRTELAGGPGGGV
         L+                          EG    +  DD+ WLHA+F  + AG PGGGV
Subjt:  TLQ--------------------------EGQRVSLEEDDVHWLHAIFRTELAGGPGGGV

A0A5D3BAD1 Retrotrans_gag domain-containing protein1.9e-1354.08Show/hide
Query:  RLHFFRPRENRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRSSSSSTLQEGQRVSLEEDDVHWLHAIFRTELAGGPGGGVT
        +L+  RPR NR SLQT KL KT                 VEIELPVPDTLPTSAES  S+S ST        +  DDV WLHA+FR + AGGPGGGVT
Subjt:  RLHFFRPRENRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRSSSSSTLQEGQRVSLEEDDVHWLHAIFRTELAGGPGGGVT

A0A5D3CJX3 CCHC-type domain-containing protein2.3e-1138.65Show/hide
Query:  FGLSYTEGTK----SREPRICVVCVRGIS-GQIGWESRLHFFRPRENRSSLQTRKLAKTV---------------EIELPVPDTLPTSAESSRSSSSSTL
        F LSY EGTK    S +P   +V    +S  +I   ++  +  PR NR SLQT +L KTV                IELPVPDTLPTSAESS S+SS+ L
Subjt:  FGLSYTEGTK----SREPRICVVCVRGIS-GQIGWESRLHFFRPRENRSSLQTRKLAKTV---------------EIELPVPDTLPTSAESSRSSSSSTL

Query:  Q-----------------------------EGQRVSLEEDDVHWLHAIFRTELAGGPGGGVTS
        +                              G    +  DDV WLHA+FR +  GGPGGGVT+
Subjt:  Q-----------------------------EGQRVSLEEDDVHWLHAIFRTELAGGPGGGVTS

A0A5D3D150 Reverse transcriptase6.7e-1149.5Show/hide
Query:  PRENRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRSSSSSTLQ---EGQRVS-------LEEDDVHWLHAIFRTELAGGPGGG
        PR NR SLQT +L KT                 VEIELP+PDTLPTSAESS S+SS+ L+   E   V        +  DDV WLHA+FR +  GGPGGG
Subjt:  PRENRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRSSSSSTLQ---EGQRVS-------LEEDDVHWLHAIFRTELAGGPGGG

Query:  V
        V
Subjt:  V

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GAAATAGCTCAAGCAAAGGTAGCCATAGCAGAAGCTGAGTTCAACCTGTCTACCTCTGGTTTTTGTTTCGGTTTGAGCTACACAGAAGGAACTAAGAGCAGAGAACCTCG
AATCTGTGTTGTCTGTGTTCGGGGCATTTCTGGACAAATTGGTTGGGAATCTCGTCTTCATTTCTTCAGGCCAAGAGAAAATAGGTCAAGTCTACAGACCAGGAAACTAG
CTAAGACAGTAGAGATTGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCAACGTTACAGGAGGGTCAACGGGTATCGTTA
GAGGAGGACGACGTTCATTGGCTTCACGCCATCTTCCGGACTGAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAAGCTGA
mRNA sequenceShow/hide mRNA sequence
GAAATAGCTCAAGCAAAGGTAGCCATAGCAGAAGCTGAGTTCAACCTGTCTACCTCTGGTTTTTGTTTCGGTTTGAGCTACACAGAAGGAACTAAGAGCAGAGAACCTCG
AATCTGTGTTGTCTGTGTTCGGGGCATTTCTGGACAAATTGGTTGGGAATCTCGTCTTCATTTCTTCAGGCCAAGAGAAAATAGGTCAAGTCTACAGACCAGGAAACTAG
CTAAGACAGTAGAGATTGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCAACGTTACAGGAGGGTCAACGGGTATCGTTA
GAGGAGGACGACGTTCATTGGCTTCACGCCATCTTCCGGACTGAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAAGCTGA
Protein sequenceShow/hide protein sequence
EIAQAKVAIAEAEFNLSTSGFCFGLSYTEGTKSREPRICVVCVRGISGQIGWESRLHFFRPRENRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSSTLQEGQRVSL
EEDDVHWLHAIFRTELAGGPGGGVTS