; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg026404 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026404
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDExH-box ATP-dependent RNA helicase DExH9
Genome locationscaffold13:15458823..15459842
RNA-Seq ExpressionSpg026404
SyntenySpg026404
Gene Ontology termsGO:0000460 - maturation of 5.8S rRNA (biological process)
GO:0006401 - RNA catabolic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003724 - RNA helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR025696 - rRNA-processing arch domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013780.1 DExH-box ATP-dependent RNA helicase DExH9 [Cucurbita argyrosperma subsp. argyrosperma]2.1e-6887.76Show/hide
Query:  KQVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSIECNSNDEVSSTFSTEDQVTWGLIINFQRVKGISEEDASMK
        KQVK+LEEERDSIVIEEED+LKNYYDLLKQYKS KKDIRDIVLSPRYCLPFLQPGRL+SIEC+SN+E+SSTFS +DQ TWGLIINFQR+KG+SE+DASMK
Subjt:  KQVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSIECNSNDEVSSTFSTEDQVTWGLIINFQRVKGISEEDASMK

Query:  PESANYTVDVLTRCIISKDGIGKKHVKIVQLKEHGEPHVVSISISQV
        PESANYTVDVLTRC++SKDGIGKK+VKIVQLKEHGEPHVVSI ISQ+
Subjt:  PESANYTVDVLTRCIISKDGIGKKHVKIVQLKEHGEPHVVSISISQV

XP_004140482.1 DExH-box ATP-dependent RNA helicase DExH9 [Cucumis sativus]3.2e-6989.8Show/hide
Query:  KQVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSIECNSNDEVSSTFSTEDQVTWGLIINFQRVKGISEEDASMK
        KQVK+LEEERDSIVIEEEDSLKNYYDLL QYKS KKDIR+IVLSPRYCLPFLQPGRLVSIECN NDE+SSTFS +DQVTWGLIINFQRVKG+SEEDASMK
Subjt:  KQVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSIECNSNDEVSSTFSTEDQVTWGLIINFQRVKGISEEDASMK

Query:  PESANYTVDVLTRCIISKDGIGKKHVKIVQLKEHGEPHVVSISISQV
        PESANYTVDVLTRCI+SKDGIGKK+V+I+QLKEHGEPHVVSI ISQ+
Subjt:  PESANYTVDVLTRCIISKDGIGKKHVKIVQLKEHGEPHVVSISISQV

XP_008458145.1 PREDICTED: DExH-box ATP-dependent RNA helicase DExH9 [Cucumis melo]1.4e-6989.12Show/hide
Query:  KQVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSIECNSNDEVSSTFSTEDQVTWGLIINFQRVKGISEEDASMK
        KQVK+LEEERDSIVIEEED+LKNYYDLL QYKS KKDIRDIVLSPRYCLPFLQPGRLVSIECNSNDE+SSTFS +DQVTWGLIINFQ+VKG+SEEDASMK
Subjt:  KQVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSIECNSNDEVSSTFSTEDQVTWGLIINFQRVKGISEEDASMK

Query:  PESANYTVDVLTRCIISKDGIGKKHVKIVQLKEHGEPHVVSISISQV
        PESANYTVDVLTRCI+SKDG+GKK+V+I+QLKEHGEPHVVSI ISQ+
Subjt:  PESANYTVDVLTRCIISKDGIGKKHVKIVQLKEHGEPHVVSISISQV

XP_038874774.1 DExH-box ATP-dependent RNA helicase DExH9 isoform X1 [Benincasa hispida]3.8e-7091.16Show/hide
Query:  KQVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSIECNSNDEVSSTFSTEDQVTWGLIINFQRVKGISEEDASMK
        KQVK+LEEERDSIVIEEED+LKNYYDLLKQYKS KKDIRDIVLSPRYCLPFLQPGRLVSIECNSNDE+SSTFS +DQVTWGLIINFQRVKG+SEEDASMK
Subjt:  KQVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSIECNSNDEVSSTFSTEDQVTWGLIINFQRVKGISEEDASMK

Query:  PESANYTVDVLTRCIISKDGIGKKHVKIVQLKEHGEPHVVSISISQV
        PESANY+VDVLTRCI+SKDGIGKK+VKIV+LKEHGEPHVVSI ISQ+
Subjt:  PESANYTVDVLTRCIISKDGIGKKHVKIVQLKEHGEPHVVSISISQV

XP_038874775.1 DExH-box ATP-dependent RNA helicase DExH9 isoform X2 [Benincasa hispida]3.8e-7091.16Show/hide
Query:  KQVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSIECNSNDEVSSTFSTEDQVTWGLIINFQRVKGISEEDASMK
        KQVK+LEEERDSIVIEEED+LKNYYDLLKQYKS KKDIRDIVLSPRYCLPFLQPGRLVSIECNSNDE+SSTFS +DQVTWGLIINFQRVKG+SEEDASMK
Subjt:  KQVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSIECNSNDEVSSTFSTEDQVTWGLIINFQRVKGISEEDASMK

Query:  PESANYTVDVLTRCIISKDGIGKKHVKIVQLKEHGEPHVVSISISQV
        PESANY+VDVLTRCI+SKDGIGKK+VKIV+LKEHGEPHVVSI ISQ+
Subjt:  PESANYTVDVLTRCIISKDGIGKKHVKIVQLKEHGEPHVVSISISQV

TrEMBL top hitse value%identityAlignment
A0A0A0KFR7 Uncharacterized protein1.6e-6989.8Show/hide
Query:  KQVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSIECNSNDEVSSTFSTEDQVTWGLIINFQRVKGISEEDASMK
        KQVK+LEEERDSIVIEEEDSLKNYYDLL QYKS KKDIR+IVLSPRYCLPFLQPGRLVSIECN NDE+SSTFS +DQVTWGLIINFQRVKG+SEEDASMK
Subjt:  KQVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSIECNSNDEVSSTFSTEDQVTWGLIINFQRVKGISEEDASMK

Query:  PESANYTVDVLTRCIISKDGIGKKHVKIVQLKEHGEPHVVSISISQV
        PESANYTVDVLTRCI+SKDGIGKK+V+I+QLKEHGEPHVVSI ISQ+
Subjt:  PESANYTVDVLTRCIISKDGIGKKHVKIVQLKEHGEPHVVSISISQV

A0A1S3C6P7 DExH-box ATP-dependent RNA helicase DExH97.0e-7089.12Show/hide
Query:  KQVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSIECNSNDEVSSTFSTEDQVTWGLIINFQRVKGISEEDASMK
        KQVK+LEEERDSIVIEEED+LKNYYDLL QYKS KKDIRDIVLSPRYCLPFLQPGRLVSIECNSNDE+SSTFS +DQVTWGLIINFQ+VKG+SEEDASMK
Subjt:  KQVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSIECNSNDEVSSTFSTEDQVTWGLIINFQRVKGISEEDASMK

Query:  PESANYTVDVLTRCIISKDGIGKKHVKIVQLKEHGEPHVVSISISQV
        PESANYTVDVLTRCI+SKDG+GKK+V+I+QLKEHGEPHVVSI ISQ+
Subjt:  PESANYTVDVLTRCIISKDGIGKKHVKIVQLKEHGEPHVVSISISQV

A0A5D3CSJ2 DExH-box ATP-dependent RNA helicase DExH97.0e-7089.12Show/hide
Query:  KQVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSIECNSNDEVSSTFSTEDQVTWGLIINFQRVKGISEEDASMK
        KQVK+LEEERDSIVIEEED+LKNYYDLL QYKS KKDIRDIVLSPRYCLPFLQPGRLVSIECNSNDE+SSTFS +DQVTWGLIINFQ+VKG+SEEDASMK
Subjt:  KQVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSIECNSNDEVSSTFSTEDQVTWGLIINFQRVKGISEEDASMK

Query:  PESANYTVDVLTRCIISKDGIGKKHVKIVQLKEHGEPHVVSISISQV
        PESANYTVDVLTRCI+SKDG+GKK+V+I+QLKEHGEPHVVSI ISQ+
Subjt:  PESANYTVDVLTRCIISKDGIGKKHVKIVQLKEHGEPHVVSISISQV

A0A6J1H3H0 DExH-box ATP-dependent RNA helicase DExH9-like1.0e-6887.76Show/hide
Query:  KQVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSIECNSNDEVSSTFSTEDQVTWGLIINFQRVKGISEEDASMK
        KQVK+LEEERDSIVIEEED+LKNYYDLLKQYKS KKDIRDIVLSPRYCLPFLQPGRL+SIEC+SN+E+SSTFS +DQ TWGLIINFQR+KG+SE+DASMK
Subjt:  KQVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSIECNSNDEVSSTFSTEDQVTWGLIINFQRVKGISEEDASMK

Query:  PESANYTVDVLTRCIISKDGIGKKHVKIVQLKEHGEPHVVSISISQV
        PESANYTVDVLTRC++SKDGIGKK+VKIVQLKEHGEPHVVSI ISQ+
Subjt:  PESANYTVDVLTRCIISKDGIGKKHVKIVQLKEHGEPHVVSISISQV

A0A6J1L2B4 DExH-box ATP-dependent RNA helicase DExH9-like2.2e-6887.07Show/hide
Query:  KQVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSIECNSNDEVSSTFSTEDQVTWGLIINFQRVKGISEEDASMK
        KQVK+LEEERDSIVIEEED+LKNYYDLLKQYKS KKDIRDIVLSPRYCLP+LQPGRL+SIEC+SN+E+SSTFS +DQ TWGLIINFQR+KG+SE+DASMK
Subjt:  KQVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSIECNSNDEVSSTFSTEDQVTWGLIINFQRVKGISEEDASMK

Query:  PESANYTVDVLTRCIISKDGIGKKHVKIVQLKEHGEPHVVSISISQV
        PESANYTVDVLTRC++SKDGIGKK+VKIVQLKEHGEPHVVSI ISQ+
Subjt:  PESANYTVDVLTRCIISKDGIGKKHVKIVQLKEHGEPHVVSISISQV

SwissProt top hitse value%identityAlignment
O14232 ATP-dependent RNA helicase mtr44.0e-0629.9Show/hide
Query:  QVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSIECNSNDEVSSTFSTEDQVTWGLIINFQR---VKGISEE
        +++  ++  DS  I +E  L+ Y+ L  Q + ++ D+R +V  P +CL FLQ GRLV ++  + D             WG+++N  +    KG S E
Subjt:  QVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSIECNSNDEVSSTFSTEDQVTWGLIINFQR---VKGISEE

P42285 Exosome RNA helicase MTR43.6e-1533.11Show/hide
Query:  MKQVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSIECNSNDEVSSTFSTEDQVTWGLIINFQRVKGISEEDASM
        +++VKN EE+ + IVI  E+S+  YY + +Q     K+I + +  P+YCLPFLQPGRLV ++ N  D+            WG+++NF +   +      +
Subjt:  MKQVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSIECNSNDEVSSTFSTEDQVTWGLIINFQRVKGISEEDASM

Query:  KPESANYTVDVLTRCIISKDGI---GKKHVKIVQLKEHGEPHVVSISI
         P    Y V+VL RC  SK+ +     +  K  +  E GE  VV + +
Subjt:  KPESANYTVDVLTRCIISKDGI---GKKHVKIVQLKEHGEPHVVSISI

P47047 ATP-dependent RNA helicase DOB11.7e-0930.36Show/hide
Query:  KQVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSIECNSNDEVSSTFSTEDQVTWGLIINFQRVKGISEEDAS-M
        K++  L+++ D I +E+E+++K Y+++ +  K +++D+R +V  P   L FLQPGRLV I  N  D             WG +++F   K I++ + S +
Subjt:  KQVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSIECNSNDEVSSTFSTEDQVTWGLIINFQRVKGISEEDAS-M

Query:  KPESANYTVDVL
          +  +Y V+V+
Subjt:  KPESANYTVDVL

Q9CZU3 Exosome RNA helicase MTR48.1e-1532.43Show/hide
Query:  MKQVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSIECNSNDEVSSTFSTEDQVTWGLIINFQRVKGISEEDASM
        +++VKN EE+ + IVI  E+++  YY + +Q     K+I + +  P+YCLPFLQPGRLV ++ N  D+            WG+++NF +   +      +
Subjt:  MKQVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSIECNSNDEVSSTFSTEDQVTWGLIINFQRVKGISEEDASM

Query:  KPESANYTVDVLTRCIISKDGI---GKKHVKIVQLKEHGEPHVVSISI
         P    Y V+VL RC  SK+ +     +  K  +  E GE  VV + +
Subjt:  KPESANYTVDVLTRCIISKDGI---GKKHVKIVQLKEHGEPHVVSISI

Q9XIF2 DExH-box ATP-dependent RNA helicase DExH92.2e-5263.76Show/hide
Query:  KQVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSIECNSNDEVSSTFSTEDQVTWGLIINFQRVKGISEEDASMK
        KQ+K+LEEERDS+VIEEE+SLKNYY+L+ QYKS KKDIR+IV +P+YCLPFL P R V ++C ++DE   +FS EDQ TWG+I+ F +VK +SE+D S +
Subjt:  KQVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSIECNSNDEVSSTFSTEDQVTWGLIINFQRVKGISEEDASMK

Query:  PESANYTVDVLTRCIISKDGIGKKHVKIVQLKEHGEPHVVSISISQVWS
        PE ANYTVDVLTRC++SKDG+GKK VK V +KE GEP VV++ +SQ+ S
Subjt:  PESANYTVDVLTRCIISKDGIGKKHVKIVQLKEHGEPHVVSISISQVWS

Arabidopsis top hitse value%identityAlignment
AT1G59760.1 RNA helicase, ATP-dependent, SK12/DOB1 protein1.5e-5363.76Show/hide
Query:  KQVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSIECNSNDEVSSTFSTEDQVTWGLIINFQRVKGISEEDASMK
        KQ+K+LEEERDS+VIEEE+SLKNYY+L+ QYKS KKDIR+IV +P+YCLPFL P R V ++C ++DE   +FS EDQ TWG+I+ F +VK +SE+D S +
Subjt:  KQVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSIECNSNDEVSSTFSTEDQVTWGLIINFQRVKGISEEDASMK

Query:  PESANYTVDVLTRCIISKDGIGKKHVKIVQLKEHGEPHVVSISISQVWS
        PE ANYTVDVLTRC++SKDG+GKK VK V +KE GEP VV++ +SQ+ S
Subjt:  PESANYTVDVLTRCIISKDGIGKKHVKIVQLKEHGEPHVVSISISQVWS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAACAAGTGAAAAACCTTGAAGAGGAGAGGGATTCCATAGTGATTGAAGAGGAAGATAGTTTGAAGAATTATTATGATTTGCTAAAGCAGTACAAAAGTTTCAAGAA
GGATATTCGTGATATTGTGTTGTCTCCTAGATACTGCTTACCATTTCTGCAACCTGGCAGGCTTGTATCTATTGAATGCAACAGTAATGATGAGGTTTCTTCAACTTTCT
CCACTGAGGACCAGGTTACGTGGGGATTGATAATTAATTTTCAAAGGGTGAAAGGTATTTCTGAAGAGGATGCTAGCATGAAACCAGAATCTGCAAACTACACTGTGGAC
GTTCTTACAAGATGCATTATCAGTAAAGATGGTATAGGGAAAAAACATGTCAAGATTGTTCAATTGAAAGAGCATGGAGAACCTCATGTCGTTTCCATTTCAATCTCTCA
GGTATGGAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAACAAGTGAAAAACCTTGAAGAGGAGAGGGATTCCATAGTGATTGAAGAGGAAGATAGTTTGAAGAATTATTATGATTTGCTAAAGCAGTACAAAAGTTTCAAGAA
GGATATTCGTGATATTGTGTTGTCTCCTAGATACTGCTTACCATTTCTGCAACCTGGCAGGCTTGTATCTATTGAATGCAACAGTAATGATGAGGTTTCTTCAACTTTCT
CCACTGAGGACCAGGTTACGTGGGGATTGATAATTAATTTTCAAAGGGTGAAAGGTATTTCTGAAGAGGATGCTAGCATGAAACCAGAATCTGCAAACTACACTGTGGAC
GTTCTTACAAGATGCATTATCAGTAAAGATGGTATAGGGAAAAAACATGTCAAGATTGTTCAATTGAAAGAGCATGGAGAACCTCATGTCGTTTCCATTTCAATCTCTCA
GGTATGGAGTTAG
Protein sequenceShow/hide protein sequence
MKQVKNLEEERDSIVIEEEDSLKNYYDLLKQYKSFKKDIRDIVLSPRYCLPFLQPGRLVSIECNSNDEVSSTFSTEDQVTWGLIINFQRVKGISEEDASMKPESANYTVD
VLTRCIISKDGIGKKHVKIVQLKEHGEPHVVSISISQVWS