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Spg026410 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026410
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold13:17854907..17856921
RNA-Seq ExpressionSpg026410
SyntenySpg026410
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035073.1 uncharacterized protein E6C27_scaffold57G001380 [Cucumis melo var. makuwa]1.4e-0640.21Show/hide
Query:  WICCYIPLFTLSALCDNDAVVEIELPVPDNYQSL-------------------FSAKSFQIKLQYVGGVVHCVYLRR---VMPPRTSRRRKQNQDGM
        +IC  IPL TLS L +NDAVVEI+ PVP +  SL                   F ++  Q++   V   +H ++  +   VMPPRT R+R+QNQDGM
Subjt:  WICCYIPLFTLSALCDNDAVVEIELPVPDNYQSL-------------------FSAKSFQIKLQYVGGVVHCVYLRR---VMPPRTSRRRKQNQDGM

KAA0056684.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.1e-0642.57Show/hide
Query:  WICCYIPLFTLSALCDNDAVVEIELPVPDN------------YQSLFS----------AKSFQIKLQ-YVGGVVHCVYLRR---VMPPRTSRRRKQNQDG
        +IC  I L TLS L +NDAVVEI+ PVPD             Y SL++           +S QI++Q  V   +H ++  +   VMPPRT RRR+QNQDG
Subjt:  WICCYIPLFTLSALCDNDAVVEIELPVPDN------------YQSLFS----------AKSFQIKLQ-YVGGVVHCVYLRR---VMPPRTSRRRKQNQDG

Query:  M
        M
Subjt:  M

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]6.0e-0540Show/hide
Query:  PLFTLSALCDNDAVVEIELPVPDNYQSLFSAKSFQ---------------IKLQYVGGVV--------HCVYLRR--------VMPPRTSRRRKQNQDGM
        PL TLS L DNDAVVEIELPVPD   +  SA+S +               +++ ++ G+V        H V+  +        VMPP TS+RR+ NQDGM
Subjt:  PLFTLSALCDNDAVVEIELPVPDNYQSLFSAKSFQ---------------IKLQYVGGVV--------HCVYLRR--------VMPPRTSRRRKQNQDGM

TYK11725.1 uncharacterized protein E5676_scaffold304G00370 [Cucumis melo var. makuwa]2.0e-0850.56Show/hide
Query:  LFTLSALCDNDAVVEIELPVPDNYQSLFSAKSFQIKLQYV-----GGVV--------HCVYLRR--------VMPPRTSRRRKQNQDGM
        L TLS LCDNDAVVEIELPVPD   +LF   S      YV      G+V        H V   +        VMPPRTSRRR+QNQDGM
Subjt:  LFTLSALCDNDAVVEIELPVPDNYQSLFSAKSFQIKLQYV-----GGVV--------HCVYLRR--------VMPPRTSRRRKQNQDGM

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]6.0e-0540Show/hide
Query:  PLFTLSALCDNDAVVEIELPVPDNYQSLFSAKSFQ---------------IKLQYVGGVV--------HCVYLRR--------VMPPRTSRRRKQNQDGM
        PL TLS L DNDAVVEIELPVPD   +  SA+S +               +++ ++ G+V        H V+  +        VMPP TS+RR+ NQDGM
Subjt:  PLFTLSALCDNDAVVEIELPVPDNYQSLFSAKSFQ---------------IKLQYVGGVV--------HCVYLRR--------VMPPRTSRRRKQNQDGM

TrEMBL top hitse value%identityAlignment
A0A5A7SX02 CCHC-type domain-containing protein6.9e-0740.21Show/hide
Query:  WICCYIPLFTLSALCDNDAVVEIELPVPDNYQSL-------------------FSAKSFQIKLQYVGGVVHCVYLRR---VMPPRTSRRRKQNQDGM
        +IC  IPL TLS L +NDAVVEI+ PVP +  SL                   F ++  Q++   V   +H ++  +   VMPPRT R+R+QNQDGM
Subjt:  WICCYIPLFTLSALCDNDAVVEIELPVPDNYQSL-------------------FSAKSFQIKLQYVGGVVHCVYLRR---VMPPRTSRRRKQNQDGM

A0A5A7UNA3 Reverse transcriptase5.3e-0742.57Show/hide
Query:  WICCYIPLFTLSALCDNDAVVEIELPVPDN------------YQSLFS----------AKSFQIKLQ-YVGGVVHCVYLRR---VMPPRTSRRRKQNQDG
        +IC  I L TLS L +NDAVVEI+ PVPD             Y SL++           +S QI++Q  V   +H ++  +   VMPPRT RRR+QNQDG
Subjt:  WICCYIPLFTLSALCDNDAVVEIELPVPDN------------YQSLFS----------AKSFQIKLQ-YVGGVVHCVYLRR---VMPPRTSRRRKQNQDG

Query:  M
        M
Subjt:  M

A0A5A7VMG9 Reverse transcriptase2.9e-0540Show/hide
Query:  PLFTLSALCDNDAVVEIELPVPDNYQSLFSAKSFQ---------------IKLQYVGGVV--------HCVYLRR--------VMPPRTSRRRKQNQDGM
        PL TLS L DNDAVVEIELPVPD   +  SA+S +               +++ ++ G+V        H V+  +        VMPP TS+RR+ NQDGM
Subjt:  PLFTLSALCDNDAVVEIELPVPDNYQSLFSAKSFQ---------------IKLQYVGGVV--------HCVYLRR--------VMPPRTSRRRKQNQDGM

A0A5D3CJL4 Retrotrans_gag domain-containing protein9.7e-0950.56Show/hide
Query:  LFTLSALCDNDAVVEIELPVPDNYQSLFSAKSFQIKLQYV-----GGVV--------HCVYLRR--------VMPPRTSRRRKQNQDGM
        L TLS LCDNDAVVEIELPVPD   +LF   S      YV      G+V        H V   +        VMPPRTSRRR+QNQDGM
Subjt:  LFTLSALCDNDAVVEIELPVPDNYQSLFSAKSFQIKLQYV-----GGVV--------HCVYLRR--------VMPPRTSRRRKQNQDGM

A0A5D3DX39 Reverse transcriptase2.9e-0540Show/hide
Query:  PLFTLSALCDNDAVVEIELPVPDNYQSLFSAKSFQ---------------IKLQYVGGVV--------HCVYLRR--------VMPPRTSRRRKQNQDGM
        PL TLS L DNDAVVEIELPVPD   +  SA+S +               +++ ++ G+V        H V+  +        VMPP TS+RR+ NQDGM
Subjt:  PLFTLSALCDNDAVVEIELPVPDNYQSLFSAKSFQ---------------IKLQYVGGVV--------HCVYLRR--------VMPPRTSRRRKQNQDGM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGGAAGTAGGTTGAATTTCAGGAAAAAAGTAGAGGGTAGAAGAGAAGCACAAATCTGGATTTGCTGTTATATTCCGTTGTTTACGTTGAGTGCACTCTGTGACAA
CGATGCTGTCGTAGAAATCGAGCTCCCGGTGCCTGATAACTACCAAAGTCTGTTTTCTGCTAAAAGCTTCCAGATCAAGCTCCAGTATGTGGGTGGAGTTGTACATTGTG
TTTATCTACGAAGAGTCATGCCACCACGTACCAGTAGACGACGCAAACAGAATCAGGATGGGATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTGGAAGTAGGTTGAATTTCAGGAAAAAAGTAGAGGGTAGAAGAGAAGCACAAATCTGGATTTGCTGTTATATTCCGTTGTTTACGTTGAGTGCACTCTGTGACAA
CGATGCTGTCGTAGAAATCGAGCTCCCGGTGCCTGATAACTACCAAAGTCTGTTTTCTGCTAAAAGCTTCCAGATCAAGCTCCAGTATGTGGGTGGAGTTGTACATTGTG
TTTATCTACGAAGAGTCATGCCACCACGTACCAGTAGACGACGCAAACAGAATCAGGATGGGATGTAG
Protein sequenceShow/hide protein sequence
MTGSRLNFRKKVEGRREAQIWICCYIPLFTLSALCDNDAVVEIELPVPDNYQSLFSAKSFQIKLQYVGGVVHCVYLRRVMPPRTSRRRKQNQDGM