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Spg026417 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026417
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold13:17172210..17173041
RNA-Seq ExpressionSpg026417
SyntenySpg026417
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037515.1 uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa]4.1e-0659.32Show/hide
Query:  VEIELPVSDTLPTSAESTKSTFSSAIQQGQQVSLEEDDVCWLHAISLTKLAGSLGGGVT
        VEIELPVSDTLP SAES+ S   SA        + EDDVCWLH +   K AG  GGGVT
Subjt:  VEIELPVSDTLPTSAESTKSTFSSAIQQGQQVSLEEDDVCWLHAISLTKLAGSLGGGVT

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]5.3e-0660Show/hide
Query:  VEIELPVSDTLPTSAESTKS-TFSSAIQQGQQVSLEEDDVCWLHAISLTKLAGSLGGGVT
        VEIELPV DTLPTSAES +S + S+ I +G       DDVCWLHA+   K AG  GGGVT
Subjt:  VEIELPVSDTLPTSAESTKS-TFSSAIQQGQQVSLEEDDVCWLHAISLTKLAGSLGGGVT

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]4.1e-0644.44Show/hide
Query:  VEIELPVSDTLPTSAESTKSTFSSAIQQGQQV----------SLEEDDVCWLHAISLTKLAGSLGGGVTITPQTSQLQTSQ
        VEIELPV DTLPTSAES++S  S+ ++   +            + EDDVCWLHA+   K AG  GGGV   P + + + +Q
Subjt:  VEIELPVSDTLPTSAESTKSTFSSAIQQGQQV----------SLEEDDVCWLHAISLTKLAGSLGGGVTITPQTSQLQTSQ

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]2.4e-0639.45Show/hide
Query:  GVLGGPHYIV-----------------EVEIELPVSDTLPTSAESTKSTFS-------------SAIQQGQQVSLE--------EDDVCWLHAISLTKLA
        GV GGPHYIV                  +EIEL V DTLPTSAES+ S  S             S ++   ++  E        E+DVCWLHA+   K+A
Subjt:  GVLGGPHYIV-----------------EVEIELPVSDTLPTSAESTKSTFS-------------SAIQQGQQVSLE--------EDDVCWLHAISLTKLA

Query:  GSLGGGVTI
        G  GGGVT+
Subjt:  GSLGGGVTI

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]4.1e-0644.44Show/hide
Query:  VEIELPVSDTLPTSAESTKSTFSSAIQQGQQV----------SLEEDDVCWLHAISLTKLAGSLGGGVTITPQTSQLQTSQ
        VEIELPV DTLPTSAES++S  S+ ++   +            + EDDVCWLHA+   K AG  GGGV   P + + + +Q
Subjt:  VEIELPVSDTLPTSAESTKSTFSSAIQQGQQV----------SLEEDDVCWLHAISLTKLAGSLGGGVTITPQTSQLQTSQ

TrEMBL top hitse value%identityAlignment
A0A5A7VMG9 Reverse transcriptase2.0e-0644.44Show/hide
Query:  VEIELPVSDTLPTSAESTKSTFSSAIQQGQQV----------SLEEDDVCWLHAISLTKLAGSLGGGVTITPQTSQLQTSQ
        VEIELPV DTLPTSAES++S  S+ ++   +            + EDDVCWLHA+   K AG  GGGV   P + + + +Q
Subjt:  VEIELPVSDTLPTSAESTKSTFSSAIQQGQQV----------SLEEDDVCWLHAISLTKLAGSLGGGVTITPQTSQLQTSQ

A0A5D3BAD1 Retrotrans_gag domain-containing protein2.6e-0660Show/hide
Query:  VEIELPVSDTLPTSAESTKS-TFSSAIQQGQQVSLEEDDVCWLHAISLTKLAGSLGGGVT
        VEIELPV DTLPTSAES +S + S+ I +G       DDVCWLHA+   K AG  GGGVT
Subjt:  VEIELPVSDTLPTSAESTKS-TFSSAIQQGQQVSLEEDDVCWLHAISLTKLAGSLGGGVT

A0A5D3BSA6 Retrotrans_gag domain-containing protein2.0e-0659.32Show/hide
Query:  VEIELPVSDTLPTSAESTKSTFSSAIQQGQQVSLEEDDVCWLHAISLTKLAGSLGGGVT
        VEIELPVSDTLP SAES+ S   SA        + EDDVCWLH +   K AG  GGGVT
Subjt:  VEIELPVSDTLPTSAESTKSTFSSAIQQGQQVSLEEDDVCWLHAISLTKLAGSLGGGVT

A0A5D3CAC6 Uncharacterized protein1.2e-0639.45Show/hide
Query:  GVLGGPHYIV-----------------EVEIELPVSDTLPTSAESTKSTFS-------------SAIQQGQQVSLE--------EDDVCWLHAISLTKLA
        GV GGPHYIV                  +EIEL V DTLPTSAES+ S  S             S ++   ++  E        E+DVCWLHA+   K+A
Subjt:  GVLGGPHYIV-----------------EVEIELPVSDTLPTSAESTKSTFS-------------SAIQQGQQVSLE--------EDDVCWLHAISLTKLA

Query:  GSLGGGVTI
        G  GGGVT+
Subjt:  GSLGGGVTI

A0A5D3DX39 Reverse transcriptase2.0e-0644.44Show/hide
Query:  VEIELPVSDTLPTSAESTKSTFSSAIQQGQQV----------SLEEDDVCWLHAISLTKLAGSLGGGVTITPQTSQLQTSQ
        VEIELPV DTLPTSAES++S  S+ ++   +            + EDDVCWLHA+   K AG  GGGV   P + + + +Q
Subjt:  VEIELPVSDTLPTSAESTKSTFSSAIQQGQQV----------SLEEDDVCWLHAISLTKLAGSLGGGVTITPQTSQLQTSQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGAGGTAGAGATCGAGCTCCCGGTGTCTGATACACTGCCAACGTCTGCTGAAAGTACCAAGTCGACTTTCAGTTCAGC
GATTCAGCAGGGTCAACAGGTATCGTTGGAGGAGGACGATGTCTGTTGGCTTCACGCCATCTCCCTGACTAAGCTAGCAGGTAGTTTGGGTGGGGGTGTGACAATAACTC
CCCAGACTTCACAACTCCAGACTTCACAACTCCACCTCGTTGCCCCAAACACCCCCTTATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGAGGTAGAGATCGAGCTCCCGGTGTCTGATACACTGCCAACGTCTGCTGAAAGTACCAAGTCGACTTTCAGTTCAGC
GATTCAGCAGGGTCAACAGGTATCGTTGGAGGAGGACGATGTCTGTTGGCTTCACGCCATCTCCCTGACTAAGCTAGCAGGTAGTTTGGGTGGGGGTGTGACAATAACTC
CCCAGACTTCACAACTCCAGACTTCACAACTCCACCTCGTTGCCCCAAACACCCCCTTATAG
Protein sequenceShow/hide protein sequence
MGVLGGPHYIVEVEIELPVSDTLPTSAESTKSTFSSAIQQGQQVSLEEDDVCWLHAISLTKLAGSLGGGVTITPQTSQLQTSQLHLVAPNTPL