; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg026429 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026429
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposable element Tf2
Genome locationscaffold13:17619034..17620173
RNA-Seq ExpressionSpg026429
SyntenySpg026429
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034823.1 hypothetical protein E6C27_scaffold213G00570 [Cucumis melo var. makuwa]6.4e-1864.86Show/hide
Query:  VTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMAASS
        + K LKIK W+K+NFQ+AT+  +KEWFA N YLQDID ++N EFLNDKSKLL ALAQ T+DADFQR+L  A ++
Subjt:  VTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMAASS

KAA0049709.1 hypothetical protein E6C27_scaffold76G00530 [Cucumis melo var. makuwa]2.2e-1845.73Show/hide
Query:  MSADQYAMELGFTPVTRSRSRQGGIRPMPPMESSTPPPRPSANLVRPSGGVVQLRPPVSPSSVMGSSIPSSSTYSAAVTPEKSNQPQYKTVTKILKIKWW
        MSADQYAM+LGFT VTRSRSR   IR   P ESST PP+PS NL+RPSGGVVQ+R PVSPSS   SS P  +TYS AVTP+K                  
Subjt:  MSADQYAMELGFTPVTRSRSRQGGIRPMPPMESSTPPPRPSANLVRPSGGVVQLRPPVSPSSVMGSSIPSSSTYSAAVTPEKSNQPQYKTVTKILKIKWW

Query:  DKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMAASS
                                             +SKLLAALAQ T+DADFQR+L    ++
Subjt:  DKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMAASS

KAA0059031.1 polyprotein [Cucumis melo var. makuwa]3.0e-3165.57Show/hide
Query:  PPRPSANLVRPSGGVVQLRPPVSPSSVMGSSIPSSSTYSAAVTPEK----SNQPQYKTVTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNA
        PPRPSANL+R SG  VQ+RP  S SS   SS P S+TYS  VTP+K    ++ PQYK + K LKIKWW K+NFQ+AT+  +KEWFA NGYLQDID ++N 
Subjt:  PPRPSANLVRPSGGVVQLRPPVSPSSVMGSSIPSSSTYSAAVTPEK----SNQPQYKTVTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNA

Query:  EFLNDKSKLLAALAQTTSDADF
        EFLNDKSKLLAALAQ T+DADF
Subjt:  EFLNDKSKLLAALAQTTSDADF

KAA0066421.1 hypothetical protein E6C27_scaffold21G005030 [Cucumis melo var. makuwa]9.2e-1749.65Show/hide
Query:  MSADQYAMELGFTPVTRSRSRQGGIRPMPPMESSTPPPRPSANLVRPSGGVVQLRPPVSPSSVMGSSIPSSSTYSAAVTPEKSNQPQYKTVTKILK-IKW
        MSADQYAM+LGFT VTRSRSR   IR     ESST PPRPSANL+RP GG VQ+RPP SPSS   SS P  +TYS  VTP+K   P+ +  +   K I  
Subjt:  MSADQYAMELGFTPVTRSRSRQGGIRPMPPMESSTPPPRPSANLVRPSGGVVQLRPPVSPSSVMGSSIPSSSTYSAAVTPEKSNQPQYKTVTKILK-IKW

Query:  WDKF---NFQNATLNK-VKEWFAANGYLQDIDIKRNAEFLN
        +D      +Q+ TL K V + F  N  L   D+++   F++
Subjt:  WDKF---NFQNATLNK-VKEWFAANGYLQDIDIKRNAEFLN

TYJ98361.1 hypothetical protein E5676_scaffold232G00950 [Cucumis melo var. makuwa]3.0e-2349.09Show/hide
Query:  MSADQYAMELGFTPVTRSRSRQGGIRPMPPMESSTPPPRPSANLVRPSGGVVQLRPPVSPSSVMGSSIPSSSTYSAAVTPEKSNQPQYKTVTKILK-IKW
        MS DQYAM+LG+T V +SRS+  GI    PMESST PPRPS NL+ P G V+Q+R   SPSS   SS    +TYS AVTP+K   P+ +  +   K I  
Subjt:  MSADQYAMELGFTPVTRSRSRQGGIRPMPPMESSTPPPRPSANLVRPSGGVVQLRPPVSPSSVMGSSIPSSSTYSAAVTPEKSNQPQYKTVTKILK-IKW

Query:  WDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMAASS
        +D           ++  +  NG LQDID ++NA+FLNDK K LAAL Q T DADFQR+L  A ++
Subjt:  WDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMAASS

TrEMBL top hitse value%identityAlignment
A0A5A7SWC0 Uncharacterized protein3.1e-1864.86Show/hide
Query:  VTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMAASS
        + K LKIK W+K+NFQ+AT+  +KEWFA N YLQDID ++N EFLNDKSKLL ALAQ T+DADFQR+L  A ++
Subjt:  VTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMAASS

A0A5A7U8A0 Uncharacterized protein1.1e-1845.73Show/hide
Query:  MSADQYAMELGFTPVTRSRSRQGGIRPMPPMESSTPPPRPSANLVRPSGGVVQLRPPVSPSSVMGSSIPSSSTYSAAVTPEKSNQPQYKTVTKILKIKWW
        MSADQYAM+LGFT VTRSRSR   IR   P ESST PP+PS NL+RPSGGVVQ+R PVSPSS   SS P  +TYS AVTP+K                  
Subjt:  MSADQYAMELGFTPVTRSRSRQGGIRPMPPMESSTPPPRPSANLVRPSGGVVQLRPPVSPSSVMGSSIPSSSTYSAAVTPEKSNQPQYKTVTKILKIKWW

Query:  DKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMAASS
                                             +SKLLAALAQ T+DADFQR+L    ++
Subjt:  DKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMAASS

A0A5A7UZX0 Polyprotein1.4e-3165.57Show/hide
Query:  PPRPSANLVRPSGGVVQLRPPVSPSSVMGSSIPSSSTYSAAVTPEK----SNQPQYKTVTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNA
        PPRPSANL+R SG  VQ+RP  S SS   SS P S+TYS  VTP+K    ++ PQYK + K LKIKWW K+NFQ+AT+  +KEWFA NGYLQDID ++N 
Subjt:  PPRPSANLVRPSGGVVQLRPPVSPSSVMGSSIPSSSTYSAAVTPEK----SNQPQYKTVTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNA

Query:  EFLNDKSKLLAALAQTTSDADF
        EFLNDKSKLLAALAQ T+DADF
Subjt:  EFLNDKSKLLAALAQTTSDADF

A0A5D3BI61 Uncharacterized protein1.4e-2349.09Show/hide
Query:  MSADQYAMELGFTPVTRSRSRQGGIRPMPPMESSTPPPRPSANLVRPSGGVVQLRPPVSPSSVMGSSIPSSSTYSAAVTPEKSNQPQYKTVTKILK-IKW
        MS DQYAM+LG+T V +SRS+  GI    PMESST PPRPS NL+ P G V+Q+R   SPSS   SS    +TYS AVTP+K   P+ +  +   K I  
Subjt:  MSADQYAMELGFTPVTRSRSRQGGIRPMPPMESSTPPPRPSANLVRPSGGVVQLRPPVSPSSVMGSSIPSSSTYSAAVTPEKSNQPQYKTVTKILK-IKW

Query:  WDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMAASS
        +D           ++  +  NG LQDID ++NA+FLNDK K LAAL Q T DADFQR+L  A ++
Subjt:  WDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMAASS

A0A5D3BM67 Uncharacterized protein4.5e-1749.65Show/hide
Query:  MSADQYAMELGFTPVTRSRSRQGGIRPMPPMESSTPPPRPSANLVRPSGGVVQLRPPVSPSSVMGSSIPSSSTYSAAVTPEKSNQPQYKTVTKILK-IKW
        MSADQYAM+LGFT VTRSRSR   IR     ESST PPRPSANL+RP GG VQ+RPP SPSS   SS P  +TYS  VTP+K   P+ +  +   K I  
Subjt:  MSADQYAMELGFTPVTRSRSRQGGIRPMPPMESSTPPPRPSANLVRPSGGVVQLRPPVSPSSVMGSSIPSSSTYSAAVTPEKSNQPQYKTVTKILK-IKW

Query:  WDKF---NFQNATLNK-VKEWFAANGYLQDIDIKRNAEFLN
        +D      +Q+ TL K V + F  N  L   D+++   F++
Subjt:  WDKF---NFQNATLNK-VKEWFAANGYLQDIDIKRNAEFLN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGCAGATCAATATGCTATGGAATTAGGGTTTACTCCGGTAACCCGTTCCAGATCAAGGCAAGGCGGTATACGCCCTATGCCTCCAATGGAGTCTTCTACTCCACC
TCCACGGCCTTCGGCCAACCTCGTCCGTCCTTCAGGCGGAGTTGTTCAACTGAGACCTCCTGTCTCTCCCTCTTCAGTCATGGGATCATCAATCCCATCCTCTTCAACCT
ACTCTGCGGCGGTAACACCGGAAAAGAGCAATCAACCTCAGTACAAAACAGTCACCAAGATCCTAAAGATCAAGTGGTGGGATAAATTCAATTTCCAGAACGCAACCCTC
AACAAAGTTAAAGAGTGGTTTGCAGCTAATGGATATCTCCAGGATATCGACATCAAGAGGAATGCAGAATTTCTCAATGACAAATCCAAGCTCCTAGCAGCTCTGGCACA
GACCACATCTGATGCAGATTTTCAAAGAATTCTCCAGATGGCGGCTTCAAGTCTTGTATCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGCAGATCAATATGCTATGGAATTAGGGTTTACTCCGGTAACCCGTTCCAGATCAAGGCAAGGCGGTATACGCCCTATGCCTCCAATGGAGTCTTCTACTCCACC
TCCACGGCCTTCGGCCAACCTCGTCCGTCCTTCAGGCGGAGTTGTTCAACTGAGACCTCCTGTCTCTCCCTCTTCAGTCATGGGATCATCAATCCCATCCTCTTCAACCT
ACTCTGCGGCGGTAACACCGGAAAAGAGCAATCAACCTCAGTACAAAACAGTCACCAAGATCCTAAAGATCAAGTGGTGGGATAAATTCAATTTCCAGAACGCAACCCTC
AACAAAGTTAAAGAGTGGTTTGCAGCTAATGGATATCTCCAGGATATCGACATCAAGAGGAATGCAGAATTTCTCAATGACAAATCCAAGCTCCTAGCAGCTCTGGCACA
GACCACATCTGATGCAGATTTTCAAAGAATTCTCCAGATGGCGGCTTCAAGTCTTGTATCTTGA
Protein sequenceShow/hide protein sequence
MSADQYAMELGFTPVTRSRSRQGGIRPMPPMESSTPPPRPSANLVRPSGGVVQLRPPVSPSSVMGSSIPSSSTYSAAVTPEKSNQPQYKTVTKILKIKWWDKFNFQNATL
NKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMAASSLVS