; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg026448 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026448
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold13:15095403..15097905
RNA-Seq ExpressionSpg026448
SyntenySpg026448
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5454638.1 hypothetical protein F2P56_024287 [Juglans regia]7.1e-0838.18Show/hide
Query:  SSSLDRNRR---WSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVTVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLVVESDCQLAINFIN
        SSS    +R   W+PP   F KLN D A   +V    LG++ R+ +GK+ +AASK  +        EL A+L GL+L++ LG + L+VESDC   +  +N
Subjt:  SSSLDRNRR---WSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVTVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLVVESDCQLAINFIN

Query:  KRQRRDAISL
          Q  D++S+
Subjt:  KRQRRDAISL

OMO72757.1 hypothetical protein CCACVL1_17615 [Corchorus capsularis]1.9e-0838.21Show/hide
Query:  RWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVTVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLVVESDCQLAINFINKRQRRDAISLA
        RWSPP    WK+N+DAA  K++ +  LG + R+FEG+V  +  K +    +   A L+AI  GL+L  S G    V+ESDC LAI          AI+  
Subjt:  RWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVTVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLVVESDCQLAINFINKRQRRDAISLA

Query:  SRRCDSVATLCTQRRDATRRFSI
        S R      L +  RD  R FS+
Subjt:  SRRCDSVATLCTQRRDATRRFSI

XP_040996092.1 LOW QUALITY PROTEIN: uncharacterized protein LOC121242268 [Juglans microcarpa x Juglans regia]3.4e-1045.56Show/hide
Query:  RWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVTVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLVVESDCQLAINFINK
        RWSPP+    KLN D A   E++ TSLG I RN  G V +A S+A  V+LE    E  A+L GL+L +++G + LV+ESDC   +  +NK
Subjt:  RWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVTVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLVVESDCQLAINFINK

XP_042950144.1 uncharacterized protein LOC122282259 [Carya illinoinensis]7.1e-0839.81Show/hide
Query:  NRRWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVTVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLVVESDCQLAINFINKRQRRDAIS
        N  WSPP   F KLN D A   +     +G + R+  G+V +AASK      E    EL AIL GL+L I  G + LVVESDC+L +  + +  ++DA  
Subjt:  NRRWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVTVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLVVESDCQLAINFINKRQRRDAIS

Query:  LAS
        L +
Subjt:  LAS

XP_042965942.1 uncharacterized protein LOC122299620 [Carya illinoinensis]7.1e-0839.81Show/hide
Query:  NRRWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVTVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLVVESDCQLAINFINKRQRRDAIS
        N  WSPP   F KLN D A   +     +G + R+  G+V +AASK      E    EL AIL GL+L I  G + LVVESDC+L +  + +  ++DA  
Subjt:  NRRWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVTVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLVVESDCQLAINFINKRQRRDAIS

Query:  LAS
        L +
Subjt:  LAS

TrEMBL top hitse value%identityAlignment
A0A1R3GKQ5 Reverse transcriptase5.9e-0836.84Show/hide
Query:  RNRRWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVTVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLVVESDCQLAINFINKRQ
        R   W  P+   WK+N+DA+ S       LG++ R++EGK+ V+ ++ L    ++  AE+ AIL G +L +  G T  ++ESD  LAI+ INK++
Subjt:  RNRRWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVTVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLVVESDCQLAINFINKRQ

A0A1R3HQR7 Ribonuclease H9.0e-0938.21Show/hide
Query:  RWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVTVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLVVESDCQLAINFINKRQRRDAISLA
        RWSPP    WK+N+DAA  K++ +  LG + R+FEG+V  +  K +    +   A L+AI  GL+L  S G    V+ESDC LAI          AI+  
Subjt:  RWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVTVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLVVESDCQLAINFINKRQRRDAISLA

Query:  SRRCDSVATLCTQRRDATRRFSI
        S R      L +  RD  R FS+
Subjt:  SRRCDSVATLCTQRRDATRRFSI

A0A1S8ABJ9 Ribonuclease H-like superfamily protein (Fragment)7.7e-0842.7Show/hide
Query:  WSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVTVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLVVESDCQLAINFINK
        W PP+   +KLN+DAA  KE  +T LG I RN +G V  A +       +  IAE  AILEGLKL   +  +  ++ESD +  +NFI K
Subjt:  WSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVTVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLVVESDCQLAINFINK

A0A6J1BQ49 uncharacterized protein LOC1110047867.7e-0845Show/hide
Query:  SNEDSSSLDRNRRWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVTVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLVVESDCQLAINFI
        S + SS    + RW PP     K+NSDAAC    + T LG+I R+  G + VA S  L + L    AE+  ILE LKL  S   T LVVESDCQ AI  +
Subjt:  SNEDSSSLDRNRRWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVTVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLVVESDCQLAINFI

A0A6J1DJL6 uncharacterized protein LOC1110217113.8e-0738.61Show/hide
Query:  NEDSSSLDRNRRWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVTVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLVVESDCQLAINFIN
        N + +  D N  W+PP+  + K+N D AC    S T +G++C+N +G++ VA  + LDV  E    E  AILEGL L   L    + V+SD Q +IN I+
Subjt:  NEDSSSLDRNRRWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVTVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLVVESDCQLAINFIN

Query:  K
        +
Subjt:  K

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGGATCAAAAGTAATGAGGATTCTTCTTCTTTGGACAGAAATCGACGGTGGTCTCCTCCGAATGGCGTATTTTGGAAGCTTAACTCTGATGCTGCATGTTCGAAAGA
GGTCTCGATGACAAGTCTTGGGATGATCTGCAGAAATTTTGAGGGCAAAGTTACGGTAGCTGCATCAAAGGCTTTGGACGTGAGGTTGGAGGCCCATATTGCTGAATTAT
GGGCCATCCTTGAAGGTTTAAAGCTGGTTATTTCATTGGGCTGCACTATGTTAGTTGTGGAGTCCGATTGTCAACTTGCTATCAATTTCATCAATAAGAGACAGCGTCGA
GACGCTATCTCCTTAGCGTCGAGACGCTGTGACAGCGTCGCGACACTATGTACACAGCGTCGCGACGCTACCCGTAGATTTTCTATAAATTCCTCTTTTCAGCTACGGAT
TTGGGAGGCCAATTGGCGCCCTGGGAGCGTCCCCCTACGGATGGTGTTTGCATGGGTTAATATCAAAGTGAATGGGGAAAGTGTTCATAGTAAGTGGGAGAAGGAAACGT
GTCAAACGTATCCTGTGGTCTCCGTCATTAGGTTGCACCGTGAGATTCCTATGCGCTGCATGCGAGTCGCCCTGGGAGCGATCACCCTACGGAGGGCTTGCGCATGGGAT
TCAGAACAACGCAAACTCCAGAAAAGGATATGGTTTCCTAGGGCCATTCCCAACATTAGCTCTTCCCTACGGTGGCATTGTTGGGGCCGCCCTCTGCGATCTGAAAATGA
TGGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCGGATCAAAAGTAATGAGGATTCTTCTTCTTTGGACAGAAATCGACGGTGGTCTCCTCCGAATGGCGTATTTTGGAAGCTTAACTCTGATGCTGCATGTTCGAAAGA
GGTCTCGATGACAAGTCTTGGGATGATCTGCAGAAATTTTGAGGGCAAAGTTACGGTAGCTGCATCAAAGGCTTTGGACGTGAGGTTGGAGGCCCATATTGCTGAATTAT
GGGCCATCCTTGAAGGTTTAAAGCTGGTTATTTCATTGGGCTGCACTATGTTAGTTGTGGAGTCCGATTGTCAACTTGCTATCAATTTCATCAATAAGAGACAGCGTCGA
GACGCTATCTCCTTAGCGTCGAGACGCTGTGACAGCGTCGCGACACTATGTACACAGCGTCGCGACGCTACCCGTAGATTTTCTATAAATTCCTCTTTTCAGCTACGGAT
TTGGGAGGCCAATTGGCGCCCTGGGAGCGTCCCCCTACGGATGGTGTTTGCATGGGTTAATATCAAAGTGAATGGGGAAAGTGTTCATAGTAAGTGGGAGAAGGAAACGT
GTCAAACGTATCCTGTGGTCTCCGTCATTAGGTTGCACCGTGAGATTCCTATGCGCTGCATGCGAGTCGCCCTGGGAGCGATCACCCTACGGAGGGCTTGCGCATGGGAT
TCAGAACAACGCAAACTCCAGAAAAGGATATGGTTTCCTAGGGCCATTCCCAACATTAGCTCTTCCCTACGGTGGCATTGTTGGGGCCGCCCTCTGCGATCTGAAAATGA
TGGGTAA
Protein sequenceShow/hide protein sequence
MRIKSNEDSSSLDRNRRWSPPNGVFWKLNSDAACSKEVSMTSLGMICRNFEGKVTVAASKALDVRLEAHIAELWAILEGLKLVISLGCTMLVVESDCQLAINFINKRQRR
DAISLASRRCDSVATLCTQRRDATRRFSINSSFQLRIWEANWRPGSVPLRMVFAWVNIKVNGESVHSKWEKETCQTYPVVSVIRLHREIPMRCMRVALGAITLRRACAWD
SEQRKLQKRIWFPRAIPNISSSLRWHCWGRPLRSENDG