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Spg026449 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026449
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Genome locationscaffold13:16416514..16419105
RNA-Seq ExpressionSpg026449
SyntenySpg026449
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]1.1e-0544.83Show/hide
Query:  WKLNCDASWCNSNRRGGLGWIIRREDGSPVIAGCRVITHLWKIAWLESLAAIDGLKAI
        WKLN DA+W       G+GWI+R E G  +  GCR+I     I +LE +A  +GL+AI
Subjt:  WKLNCDASWCNSNRRGGLGWIIRREDGSPVIAGCRVITHLWKIAWLESLAAIDGLKAI
XP_022154991.1 uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]1.1e-0544.83Show/hide
Query:  WKLNCDASWCNSNRRGGLGWIIRREDGSPVIAGCRVITHLWKIAWLESLAAIDGLKAI
        WKLN DA+W       G+GWI+R E G  +  GCR+I     I +LE +A  +GL+AI
Subjt:  WKLNCDASWCNSNRRGGLGWIIRREDGSPVIAGCRVITHLWKIAWLESLAAIDGLKAI
XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]3.5e-0746.03Show/hide
Query:  WKLNCDASWCNSNRRGGLGWIIRREDGSPVIAGCRVITHLWKIAWLESLAAIDGLKAIPDRGV
        W LN DASW +S  RGG+GWIIR  DG  V+AG R +     +  LE+ A ++GL+ + + GV
Subjt:  WKLNCDASWCNSNRRGGLGWIIRREDGSPVIAGCRVITHLWKIAWLESLAAIDGLKAIPDRGV
TrEMBL top hitse value%identityAlignment
A0A6J1DL64 uncharacterized protein LOC111022134 isoform X15.4e-0644.83Show/hide
Query:  WKLNCDASWCNSNRRGGLGWIIRREDGSPVIAGCRVITHLWKIAWLESLAAIDGLKAI
        WKLN DA+W       G+GWI+R E G  +  GCR+I     I +LE +A  +GL+AI
Subjt:  WKLNCDASWCNSNRRGGLGWIIRREDGSPVIAGCRVITHLWKIAWLESLAAIDGLKAI
A0A6J1DNV9 uncharacterized protein LOC1110224031.7e-0746.03Show/hide
Query:  WKLNCDASWCNSNRRGGLGWIIRREDGSPVIAGCRVITHLWKIAWLESLAAIDGLKAIPDRGV
        W LN DASW +S  RGG+GWIIR  DG  V+AG R +     +  LE+ A ++GL+ + + GV
Subjt:  WKLNCDASWCNSNRRGGLGWIIRREDGSPVIAGCRVITHLWKIAWLESLAAIDGLKAIPDRGV
A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X25.4e-0644.83Show/hide
Query:  WKLNCDASWCNSNRRGGLGWIIRREDGSPVIAGCRVITHLWKIAWLESLAAIDGLKAI
        WKLN DA+W       G+GWI+R E G  +  GCR+I     I +LE +A  +GL+AI
Subjt:  WKLNCDASWCNSNRRGGLGWIIRREDGSPVIAGCRVITHLWKIAWLESLAAIDGLKAI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGTCTTGTTCCGTCGCTGTCGATTTGGTCCAGTCGCCGCCGCCGCTCAACCCTCCACCGGTATTGTTTTCTTGAAGATTCGTGTTCGAGCTCTCAGTCACTGTCT
TGTGCTGTCCAACAAGAGAATCCATGAATTGGGATGCTGGAAATTGAACTGTGATGCTTCGTGGTGTAATTCAAATCGGCGAGGTGGTCTTGGTTGGATTATTCGAAGGG
AGGATGGATCGCCGGTGATTGCAGGCTGTCGGGTCATCACTCATCTGTGGAAAATCGCATGGCTTGAATCTCTGGCTGCCATTGATGGGTTGAAAGCTATACCAGATAGG
GGTGTTAAAAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGGTCTTGTTCCGTCGCTGTCGATTTGGTCCAGTCGCCGCCGCCGCTCAACCCTCCACCGGTATTGTTTTCTTGAAGATTCGTGTTCGAGCTCTCAGTCACTGTCT
TGTGCTGTCCAACAAGAGAATCCATGAATTGGGATGCTGGAAATTGAACTGTGATGCTTCGTGGTGTAATTCAAATCGGCGAGGTGGTCTTGGTTGGATTATTCGAAGGG
AGGATGGATCGCCGGTGATTGCAGGCTGTCGGGTCATCACTCATCTGTGGAAAATCGCATGGCTTGAATCTCTGGCTGCCATTGATGGGTTGAAAGCTATACCAGATAGG
GGTGTTAAAAAATAG
Protein sequenceShow/hide protein sequence
MSVLFRRCRFGPVAAAAQPSTGIVFLKIRVRALSHCLVLSNKRIHELGCWKLNCDASWCNSNRRGGLGWIIRREDGSPVIAGCRVITHLWKIAWLESLAAIDGLKAIPDR
GVKK