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Spg026475 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026475
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold13:18256035..18261462
RNA-Seq ExpressionSpg026475
SyntenySpg026475
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]8.2e-0953.41Show/hide
Query:  LAFWVVQVESEAIFGYIPLLTLSVLRDNDAVVSVGRAPLHRRTSRRWLYWACPTQRRLVM----LVEIELPVPDTLPTSAESSRTSSN
        L+    +++   IF   PL TLSVL DNDAVVS G+APL +   RRW     PT     M    LVEIELPVPD LPTSAESSR++S+
Subjt:  LAFWVVQVESEAIFGYIPLLTLSVLRDNDAVVSVGRAPLHRRTSRRWLYWACPTQRRLVM----LVEIELPVPDTLPTSAESSRTSSN

KAA0041324.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.0e-1167.21Show/hide
Query:  GYIPLLTLSVLRDNDAVVSV------------GRAPLHRRTSRRWLYWACPTQRRLVMLVE
        GYI LLTLSVLRDN+ VVSV            GR PLHRRTS+RWLYWACPTQR  VMLV+
Subjt:  GYIPLLTLSVLRDNDAVVSV------------GRAPLHRRTSRRWLYWACPTQRRLVMLVE

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]1.1e-1661.46Show/hide
Query:  LLTLSVLRDNDAVVSVG------------RAPLHRRTSRRWLYWACPTQRRLVML----------VEIELPVPDTLPTSAESSRTSSNYAAGRLEG
        L TLSVLRDNDAVVS G            RAPLHRRTS+RWLYWACPT RR VML          VEIEL VPDTLPTSAESS ++S  +AG + G
Subjt:  LLTLSVLRDNDAVVSVG------------RAPLHRRTSRRWLYWACPTQRRLVML----------VEIELPVPDTLPTSAESSRTSSNYAAGRLEG

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]1.1e-1661.46Show/hide
Query:  LLTLSVLRDNDAVVSVG------------RAPLHRRTSRRWLYWACPTQRRLVML----------VEIELPVPDTLPTSAESSRTSSNYAAGRLEG
        L TLSVLRDNDAVVS G            RAPLHRRTS+RWLYWACPT RR VML          VEIEL VPDTLPTSAESS ++S  +AG + G
Subjt:  LLTLSVLRDNDAVVSVG------------RAPLHRRTSRRWLYWACPTQRRLVML----------VEIELPVPDTLPTSAESSRTSSNYAAGRLEG

TYK02787.1 RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein [Cucumis melo var. makuwa]3.7e-0961.67Show/hide
Query:  YIPLLTLSVLRDNDAVVSV------------GRAPLHRRTSRRWLYWACPTQRRLVMLVE
        YI LLTLSVLRDN+ ++SV            GR PLHRRTS+RWLYWAC TQR  VMLV+
Subjt:  YIPLLTLSVLRDNDAVVSV------------GRAPLHRRTSRRWLYWACPTQRRLVMLVE

TrEMBL top hitse value%identityAlignment
A0A5A7TCY8 DNA/RNA polymerases superfamily protein1.5e-1167.21Show/hide
Query:  GYIPLLTLSVLRDNDAVVSV------------GRAPLHRRTSRRWLYWACPTQRRLVMLVE
        GYI LLTLSVLRDN+ VVSV            GR PLHRRTS+RWLYWACPTQR  VMLV+
Subjt:  GYIPLLTLSVLRDNDAVVSV------------GRAPLHRRTSRRWLYWACPTQRRLVMLVE

A0A5A7VGQ5 Uncharacterized protein5.2e-1761.46Show/hide
Query:  LLTLSVLRDNDAVVSVG------------RAPLHRRTSRRWLYWACPTQRRLVML----------VEIELPVPDTLPTSAESSRTSSNYAAGRLEG
        L TLSVLRDNDAVVS G            RAPLHRRTS+RWLYWACPT RR VML          VEIEL VPDTLPTSAESS ++S  +AG + G
Subjt:  LLTLSVLRDNDAVVSVG------------RAPLHRRTSRRWLYWACPTQRRLVML----------VEIELPVPDTLPTSAESSRTSSNYAAGRLEG

A0A5D3BG85 Uncharacterized protein5.2e-1761.46Show/hide
Query:  LLTLSVLRDNDAVVSVG------------RAPLHRRTSRRWLYWACPTQRRLVML----------VEIELPVPDTLPTSAESSRTSSNYAAGRLEG
        L TLSVLRDNDAVVS G            RAPLHRRTS+RWLYWACPT RR VML          VEIEL VPDTLPTSAESS ++S  +AG + G
Subjt:  LLTLSVLRDNDAVVSVG------------RAPLHRRTSRRWLYWACPTQRRLVML----------VEIELPVPDTLPTSAESSRTSSNYAAGRLEG

A0A5D3BTJ5 RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein1.8e-0961.67Show/hide
Query:  YIPLLTLSVLRDNDAVVSV------------GRAPLHRRTSRRWLYWACPTQRRLVMLVE
        YI LLTLSVLRDN+ ++SV            GR PLHRRTS+RWLYWAC TQR  VMLV+
Subjt:  YIPLLTLSVLRDNDAVVSV------------GRAPLHRRTSRRWLYWACPTQRRLVMLVE

A0A5D3BTP3 Reverse transcriptase4.0e-0953.41Show/hide
Query:  LAFWVVQVESEAIFGYIPLLTLSVLRDNDAVVSVGRAPLHRRTSRRWLYWACPTQRRLVM----LVEIELPVPDTLPTSAESSRTSSN
        L+    +++   IF   PL TLSVL DNDAVVS G+APL +   RRW     PT     M    LVEIELPVPD LPTSAESSR++S+
Subjt:  LAFWVVQVESEAIFGYIPLLTLSVLRDNDAVVSVGRAPLHRRTSRRWLYWACPTQRRLVM----LVEIELPVPDTLPTSAESSRTSSN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTCCTCTGGTGTTTCTAGCATTCTGGGTTGTACAAGTTGAATCAGAAGC
TATATTTGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGTTGGGCGGGCCCCACTACATCGTAGGACTAGTAGACGTTGGTTGT
ACTGGGCGTGCCCTACACAACGTAGATTGGTCATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGAACAAGCTCCAATTAT
GCTGCTGGGCGACTGGAGGGAGCAAATTCTGTGCTGCAGCAAAACTGGGAGCAGAAACTGCCACGTCACAGCTCGTTAGCCAACTTCATGAACCGACTTCTGTTGAGTTA
TTTTCGGGATAAAGGAGCAAGGAGAAGCCTTACACGTGTCCTAGTTGACCTAATTCAAGCCTCCTATCACCTCTATAAAAGGAAGGAGCCGCCCAAGTCCAAATCATTCC
ACTTTTGGGAGAAAATATTCCAAGTCTTCCCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTCCTCTGGTGTTTCTAGCATTCTGGGTTGTACAAGTTGAATCAGAAGC
TATATTTGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGTTGGGCGGGCCCCACTACATCGTAGGACTAGTAGACGTTGGTTGT
ACTGGGCGTGCCCTACACAACGTAGATTGGTCATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGAACAAGCTCCAATTAT
GCTGCTGGGCGACTGGAGGGAGCAAATTCTGTGCTGCAGCAAAACTGGGAGCAGAAACTGCCACGTCACAGCTCGTTAGCCAACTTCATGAACCGACTTCTGTTGAGTTA
TTTTCGGGATAAAGGAGCAAGGAGAAGCCTTACACGTGTCCTAGTTGACCTAATTCAAGCCTCCTATCACCTCTATAAAAGGAAGGAGCCGCCCAAGTCCAAATCATTCC
ACTTTTGGGAGAAAATATTCCAAGTCTTCCCGTGA
Protein sequenceShow/hide protein sequence
MVFGMENRAQDFRAKQEDLWFPLVFLAFWVVQVESEAIFGYIPLLTLSVLRDNDAVVSVGRAPLHRRTSRRWLYWACPTQRRLVMLVEIELPVPDTLPTSAESSRTSSNY
AAGRLEGANSVLQQNWEQKLPRHSSLANFMNRLLLSYFRDKGARRSLTRVLVDLIQASYHLYKRKEPPKSKSFHFWEKIFQVFP