; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg026494 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026494
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCR4-NOT transcription complex subunit 11
Genome locationscaffold8:2223301..2227816
RNA-Seq ExpressionSpg026494
SyntenySpg026494
Gene Ontology termsGO:0031047 - gene silencing by RNA (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0030014 - CCR4-NOT complex (cellular component)
InterPro domainsIPR019312 - CCR4-NOT transcription complex subunit 11


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008460852.1 PREDICTED: CCR4-NOT transcription complex subunit 11 isoform X1 [Cucumis melo]2.3e-5480.13Show/hide
Query:  MFTISNKEMKKGSVKMMSLTVDESRTLYSLLAGGDHRPFLDIIADFAAKIPRTRHFIACYSLATLLEPKKLLHASQRLVGFSILHQTYSSQKSSSNPFIS
        MF ISNKE+K GS+K MSLT DESRTLYSLLAGGDHRPF DI+ADF +KIPRTRHF+ACYSL  LLEPKKLL A+QRLVGFSILHQTYSSQKSS NPFIS
Subjt:  MFTISNKEMKKGSVKMMSLTVDESRTLYSLLAGGDHRPFLDIIADFAAKIPRTRHFIACYSLATLLEPKKLLHASQRLVGFSILHQTYSSQKSSSNPFIS

Query:  FIVNAASDEEAEKYERAFVFQLLATDSSSGGKEV--QLLIDHI-DFSSILH
        FIVNAASDEEAEKYERAFVFQLLATD+SS GKE   Q   D+I  F   LH
Subjt:  FIVNAASDEEAEKYERAFVFQLLATDSSSGGKEV--QLLIDHI-DFSSILH

XP_011649439.1 CCR4-NOT transcription complex subunit 11 [Cucumis sativus]9.6e-5378.81Show/hide
Query:  MFTISNKEMKKGSVKMMSLTVDESRTLYSLLAGGDHRPFLDIIADFAAKIPRTRHFIACYSLATLLEPKKLLHASQRLVGFSILHQTYSSQKSSSNPFIS
        MF ISNKE+K GS+K MSLT DESRTL SLLAGGDHRPF DI+ADF +KIPRTRHF+ACYSL  L EPK LL A+QRLVGFSILHQTYSSQKSS NPFIS
Subjt:  MFTISNKEMKKGSVKMMSLTVDESRTLYSLLAGGDHRPFLDIIADFAAKIPRTRHFIACYSLATLLEPKKLLHASQRLVGFSILHQTYSSQKSSSNPFIS

Query:  FIVNAASDEEAEKYERAFVFQLLATDSSSGGKEV--QLLIDHI-DFSSILH
        FIVNAASDEEAEKYERAFVFQLLATDSSS GKE   Q   D+I  F   LH
Subjt:  FIVNAASDEEAEKYERAFVFQLLATDSSSGGKEV--QLLIDHI-DFSSILH

XP_038901185.1 CCR4-NOT transcription complex subunit 11 isoform X1 [Benincasa hispida]3.9e-5486.47Show/hide
Query:  MFTISNKEMKKGSVKMMSLTVDESRTLYSLLAGGDHRPFLDIIADFAAKIPRTRHFIACYSLATLLEPKKLLHASQRLVGFSILHQTYSSQKSSSNPFIS
        MF ISNKE+K+GS+K MSLT DESRTLYSLLAGGDHR F DI+ADF +KIPRTR F+ACYSL  LLEPKKLL A+QRLVGFSILHQTYSSQKSS NPFIS
Subjt:  MFTISNKEMKKGSVKMMSLTVDESRTLYSLLAGGDHRPFLDIIADFAAKIPRTRHFIACYSLATLLEPKKLLHASQRLVGFSILHQTYSSQKSSSNPFIS

Query:  FIVNAASDEEAEKYERAFVFQLLATDSSSGGKE
        FIVNAASDEEAEKYERAFVFQLLATDSSSGGKE
Subjt:  FIVNAASDEEAEKYERAFVFQLLATDSSSGGKE

XP_038901186.1 CCR4-NOT transcription complex subunit 11 isoform X2 [Benincasa hispida]3.9e-5486.47Show/hide
Query:  MFTISNKEMKKGSVKMMSLTVDESRTLYSLLAGGDHRPFLDIIADFAAKIPRTRHFIACYSLATLLEPKKLLHASQRLVGFSILHQTYSSQKSSSNPFIS
        MF ISNKE+K+GS+K MSLT DESRTLYSLLAGGDHR F DI+ADF +KIPRTR F+ACYSL  LLEPKKLL A+QRLVGFSILHQTYSSQKSS NPFIS
Subjt:  MFTISNKEMKKGSVKMMSLTVDESRTLYSLLAGGDHRPFLDIIADFAAKIPRTRHFIACYSLATLLEPKKLLHASQRLVGFSILHQTYSSQKSSSNPFIS

Query:  FIVNAASDEEAEKYERAFVFQLLATDSSSGGKE
        FIVNAASDEEAEKYERAFVFQLLATDSSSGGKE
Subjt:  FIVNAASDEEAEKYERAFVFQLLATDSSSGGKE

XP_038901187.1 CCR4-NOT transcription complex subunit 11 isoform X3 [Benincasa hispida]5.1e-5480.13Show/hide
Query:  MFTISNKEMKKGSVKMMSLTVDESRTLYSLLAGGDHRPFLDIIADFAAKIPRTRHFIACYSLATLLEPKKLLHASQRLVGFSILHQTYSSQKSSSNPFIS
        MF ISNKE+K+GS+K MSLT DESRTLYSLLAGGDHR F DI+ADF +KIPRTR F+ACYSL  LLEPKKLL A+QRLVGFSILHQTYSSQKSS NPFIS
Subjt:  MFTISNKEMKKGSVKMMSLTVDESRTLYSLLAGGDHRPFLDIIADFAAKIPRTRHFIACYSLATLLEPKKLLHASQRLVGFSILHQTYSSQKSSSNPFIS

Query:  FIVNAASDEEAEKYERAFVFQLLATDSSSGGKEV--QLLIDHI-DFSSILH
        FIVNAASDEEAEKYERAFVFQLLATDSSSGGKE   Q   D+I  F   LH
Subjt:  FIVNAASDEEAEKYERAFVFQLLATDSSSGGKEV--QLLIDHI-DFSSILH

TrEMBL top hitse value%identityAlignment
A0A0A0LK95 CCR4-NOT transcription complex subunit 114.6e-5378.81Show/hide
Query:  MFTISNKEMKKGSVKMMSLTVDESRTLYSLLAGGDHRPFLDIIADFAAKIPRTRHFIACYSLATLLEPKKLLHASQRLVGFSILHQTYSSQKSSSNPFIS
        MF ISNKE+K GS+K MSLT DESRTL SLLAGGDHRPF DI+ADF +KIPRTRHF+ACYSL  L EPK LL A+QRLVGFSILHQTYSSQKSS NPFIS
Subjt:  MFTISNKEMKKGSVKMMSLTVDESRTLYSLLAGGDHRPFLDIIADFAAKIPRTRHFIACYSLATLLEPKKLLHASQRLVGFSILHQTYSSQKSSSNPFIS

Query:  FIVNAASDEEAEKYERAFVFQLLATDSSSGGKEV--QLLIDHI-DFSSILH
        FIVNAASDEEAEKYERAFVFQLLATDSSS GKE   Q   D+I  F   LH
Subjt:  FIVNAASDEEAEKYERAFVFQLLATDSSSGGKEV--QLLIDHI-DFSSILH

A0A1S3CDE6 CCR4-NOT transcription complex subunit 111.1e-5480.13Show/hide
Query:  MFTISNKEMKKGSVKMMSLTVDESRTLYSLLAGGDHRPFLDIIADFAAKIPRTRHFIACYSLATLLEPKKLLHASQRLVGFSILHQTYSSQKSSSNPFIS
        MF ISNKE+K GS+K MSLT DESRTLYSLLAGGDHRPF DI+ADF +KIPRTRHF+ACYSL  LLEPKKLL A+QRLVGFSILHQTYSSQKSS NPFIS
Subjt:  MFTISNKEMKKGSVKMMSLTVDESRTLYSLLAGGDHRPFLDIIADFAAKIPRTRHFIACYSLATLLEPKKLLHASQRLVGFSILHQTYSSQKSSSNPFIS

Query:  FIVNAASDEEAEKYERAFVFQLLATDSSSGGKEV--QLLIDHI-DFSSILH
        FIVNAASDEEAEKYERAFVFQLLATD+SS GKE   Q   D+I  F   LH
Subjt:  FIVNAASDEEAEKYERAFVFQLLATDSSSGGKEV--QLLIDHI-DFSSILH

A0A6J1EVU1 CCR4-NOT transcription complex subunit 113.0e-5292.37Show/hide
Query:  MMSLTVDESRTLYSLLAGGDHRPFLDIIADFAAKIPRTRHFIACYSLATLLEPKKLLHASQRLVGFSILHQTYSSQKSSSNPFISFIVNAASDEEAEKYE
        MMSLTVDESRTLYSLLAGGDHR FLDII+DF +KIPRTRHF+ACYSL  LLE KKLLHA+QRLVGFSILHQTYSSQKSSSNPFISFIVNAASDEEAEKYE
Subjt:  MMSLTVDESRTLYSLLAGGDHRPFLDIIADFAAKIPRTRHFIACYSLATLLEPKKLLHASQRLVGFSILHQTYSSQKSSSNPFISFIVNAASDEEAEKYE

Query:  RAFVFQLLATDSSSGGKE
        RAFVFQLLATDSSSGGKE
Subjt:  RAFVFQLLATDSSSGGKE

A0A6J1ICB1 CCR4-NOT transcription complex subunit 113.9e-5292.37Show/hide
Query:  MMSLTVDESRTLYSLLAGGDHRPFLDIIADFAAKIPRTRHFIACYSLATLLEPKKLLHASQRLVGFSILHQTYSSQKSSSNPFISFIVNAASDEEAEKYE
        MMSLTVDESRTLYSLLAGGDHR FLDII+DF  KIPRTRHF+ACYSL  LLE KKLLHA+QRLVGFSILHQTYSSQKSSSNPFISFIVNAASDEEAEKYE
Subjt:  MMSLTVDESRTLYSLLAGGDHRPFLDIIADFAAKIPRTRHFIACYSLATLLEPKKLLHASQRLVGFSILHQTYSSQKSSSNPFISFIVNAASDEEAEKYE

Query:  RAFVFQLLATDSSSGGKE
        RAFVFQLLATDSSSGGKE
Subjt:  RAFVFQLLATDSSSGGKE

A0A6J1L478 CCR4-NOT transcription complex subunit 116.7e-5284.21Show/hide
Query:  MFTISNKEMKKGSVKMMSLTVDESRTLYSLLAGGDHRPFLDIIADFAAKIPRTRHFIACYSLATLLEPKKLLHASQRLVGFSILHQTYSSQKSSSNPFIS
        MF ++N E K GS+K M+LTVDESRTLYSLLAGGD RPFLDIIADF +KIPRTR FIACYSLA LLEPKKLLHA+QRLVGFSILHQTYSSQKSSSNPFIS
Subjt:  MFTISNKEMKKGSVKMMSLTVDESRTLYSLLAGGDHRPFLDIIADFAAKIPRTRHFIACYSLATLLEPKKLLHASQRLVGFSILHQTYSSQKSSSNPFIS

Query:  FIVNAASDEEAEKYERAFVFQLLATDSSSGGKE
        FIV+AASDEEAE  ERAF+FQLLA+DSSS GKE
Subjt:  FIVNAASDEEAEKYERAFVFQLLATDSSSGGKE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G18420.1 unknown protein4.3e-1938.28Show/hide
Query:  MMSLTVDESRTLYSLLAGGDHRPFLDIIADFAAKIPRTRHFIACYSLATLLEPKKLLHASQRLVGFSILHQTYSSQKSSSNPFISFIVNAASDEEAEKYE
        MM + ++ES  + SLL   D RP  D++++F +K    R+   C SL+ +L+ +++   ++RL+ F I++Q YSSQK S NPF+S +++AA +E+ EK E
Subjt:  MMSLTVDESRTLYSLLAGGDHRPFLDIIADFAAKIPRTRHFIACYSLATLLEPKKLLHASQRLVGFSILHQTYSSQKSSSNPFISFIVNAASDEEAEKYE

Query:  RAFVFQLLATDSSSGGKEVQLLIDHIDF
        RAF+  LL  +S +  KE+ L +  +D+
Subjt:  RAFVFQLLATDSSSGGKEVQLLIDHIDF

AT5G18420.2 unknown protein4.3e-1938.28Show/hide
Query:  MMSLTVDESRTLYSLLAGGDHRPFLDIIADFAAKIPRTRHFIACYSLATLLEPKKLLHASQRLVGFSILHQTYSSQKSSSNPFISFIVNAASDEEAEKYE
        MM + ++ES  + SLL   D RP  D++++F +K    R+   C SL+ +L+ +++   ++RL+ F I++Q YSSQK S NPF+S +++AA +E+ EK E
Subjt:  MMSLTVDESRTLYSLLAGGDHRPFLDIIADFAAKIPRTRHFIACYSLATLLEPKKLLHASQRLVGFSILHQTYSSQKSSSNPFISFIVNAASDEEAEKYE

Query:  RAFVFQLLATDSSSGGKEVQLLIDHIDF
        RAF+  LL  +S +  KE+ L +  +D+
Subjt:  RAFVFQLLATDSSSGGKEVQLLIDHIDF

AT5G18420.3 unknown protein3.1e-1738.28Show/hide
Query:  MMSLTVDESRTLYSLLAGGDHRPFLDIIADFAAKIPRTRHFIACYSLATLLEPKKLLHASQRLVGFSILHQTYSSQKSSSNPFISFIVNAASDEEAEKYE
        MM + ++ES  + SLL   D RP  D++++F +K    R+   C SL+ +L+   +   ++RL+ F I++Q YSSQK S NPF+S +++AA +E+ EK E
Subjt:  MMSLTVDESRTLYSLLAGGDHRPFLDIIADFAAKIPRTRHFIACYSLATLLEPKKLLHASQRLVGFSILHQTYSSQKSSSNPFISFIVNAASDEEAEKYE

Query:  RAFVFQLLATDSSSGGKEVQLLIDHIDF
        RAF+  LL  +S +  KE+ L +  +D+
Subjt:  RAFVFQLLATDSSSGGKEVQLLIDHIDF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCACAATCTCGAACAAGGAAATGAAGAAGGGAAGCGTGAAGATGATGAGCCTCACCGTAGATGAATCACGGACGCTCTACTCTTTGCTAGCAGGAGGAGATCACCG
CCCCTTTCTGGACATCATCGCCGATTTTGCCGCCAAGATCCCTCGCACTCGTCACTTTATTGCTTGTTATTCCCTCGCTACTCTCTTGGAGCCAAAGAAGTTGCTCCATG
CTTCTCAACGTTTAGTGGGATTTTCTATTCTTCACCAGACATATTCCTCGCAGAAATCTTCTTCTAATCCGTTTATATCTTTTATTGTAAATGCTGCTTCTGATGAGGAA
GCTGAAAAATATGAGAGGGCATTTGTTTTCCAGCTTTTGGCAACAGACAGCTCCAGTGGTGGCAAAGAGGTCCAACTTTTAATTGACCACATTGATTTTAGTTCCATTTT
GCACATGCTTAATTGTTTATAA
mRNA sequenceShow/hide mRNA sequence
ATGTTCACAATCTCGAACAAGGAAATGAAGAAGGGAAGCGTGAAGATGATGAGCCTCACCGTAGATGAATCACGGACGCTCTACTCTTTGCTAGCAGGAGGAGATCACCG
CCCCTTTCTGGACATCATCGCCGATTTTGCCGCCAAGATCCCTCGCACTCGTCACTTTATTGCTTGTTATTCCCTCGCTACTCTCTTGGAGCCAAAGAAGTTGCTCCATG
CTTCTCAACGTTTAGTGGGATTTTCTATTCTTCACCAGACATATTCCTCGCAGAAATCTTCTTCTAATCCGTTTATATCTTTTATTGTAAATGCTGCTTCTGATGAGGAA
GCTGAAAAATATGAGAGGGCATTTGTTTTCCAGCTTTTGGCAACAGACAGCTCCAGTGGTGGCAAAGAGGTCCAACTTTTAATTGACCACATTGATTTTAGTTCCATTTT
GCACATGCTTAATTGTTTATAA
Protein sequenceShow/hide protein sequence
MFTISNKEMKKGSVKMMSLTVDESRTLYSLLAGGDHRPFLDIIADFAAKIPRTRHFIACYSLATLLEPKKLLHASQRLVGFSILHQTYSSQKSSSNPFISFIVNAASDEE
AEKYERAFVFQLLATDSSSGGKEVQLLIDHIDFSSILHMLNCL