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Spg026497 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026497
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionF-box protein GID2-like
Genome locationscaffold8:2029294..2031168
RNA-Seq ExpressionSpg026497
SyntenySpg026497
Gene Ontology termsGO:0009740 - gibberellic acid mediated signaling pathway (biological process)
GO:0009845 - seed germination (biological process)
GO:0010162 - seed dormancy process (biological process)
GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0019005 - SCF ubiquitin ligase complex (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6608444.1 F-box protein GID2, partial [Cucurbita argyrosperma subsp. sororia]3.3e-1845Show/hide
Query:  GGGKRVPGFRCEIADTQDC--GGGGGASEKTG-----------LCEQAMAQNDRRRAPLGADLHQALGEHRL------RQPITPICSSSPQR--------
        G G+R  G +  + D+ DC  GGGGGAS++TG           + +   A      A +    H+   + RL      R      C +   R        
Subjt:  GGGKRVPGFRCEIADTQDC--GGGGGASEKTG-----------LCEQAMAQNDRRRAPLGADLHQALGEHRL------RQPITPICSSSPQR--------

Query:  FRRLHSLIIWPLTKPQSSSSTSSSTSSSSSSSWSPFLAMIGSKPPARWGKDEVHLSLSLL
        FRRLHSL IWPLTKPQ+ S+++S++SSSSSS WS F AMIGSKPP RWGKDEVHLSLSLL
Subjt:  FRRLHSLIIWPLTKPQSSSSTSSSTSSSSSSSWSPFLAMIGSKPPARWGKDEVHLSLSLL

KAG7037780.1 F-box protein GID2, partial [Cucurbita argyrosperma subsp. argyrosperma]4.3e-1844.72Show/hide
Query:  GGGKRVPGFRCEIADTQDC---GGGGGASEKTG-----------LCEQAMAQNDRRRAPLGADLHQALGEHRL------RQPITPICSSSPQR-------
        G G+R  G +  + D+ DC   GGGGGAS++TG           + +   A      A +    H+   + RL      R      C +   R       
Subjt:  GGGKRVPGFRCEIADTQDC---GGGGGASEKTG-----------LCEQAMAQNDRRRAPLGADLHQALGEHRL------RQPITPICSSSPQR-------

Query:  -FRRLHSLIIWPLTKPQSSSSTSSSTSSSSSSSWSPFLAMIGSKPPARWGKDEVHLSLSLL
         FRRLHSL IWPLTKPQ+ S+++S++SSSSSS WS F AMIGSKPP RWGKDEVHLSLSLL
Subjt:  -FRRLHSLIIWPLTKPQSSSSTSSSTSSSSSSSWSPFLAMIGSKPPARWGKDEVHLSLSLL

XP_022977120.1 F-box protein GID2-like [Cucurbita maxima]1.9e-1890.32Show/hide
Query:  FRRLHSLIIWPLTKPQSSSSTSSSTSSSSSSS--WSPFLAMIGSKPPARWGKDEVHLSLSLL
        FRRLHSL IWPLTKPQSSSS+SSSTSSS+SSS  WSPF AMIGSKPPARWGKDEVHLSLSLL
Subjt:  FRRLHSLIIWPLTKPQSSSSTSSSTSSSSSSS--WSPFLAMIGSKPPARWGKDEVHLSLSLL

XP_022982290.1 F-box protein GID2-like [Cucurbita maxima]7.4e-1844.17Show/hide
Query:  GGGKRVPGFRCEIADTQDC-----GGGGGASEKTG-----------LCEQAMAQNDRRRAPLGADLHQALGEHRL------RQPITPICSSSPQR-----
        G G+R  G +  + D+ DC     GGGGGAS++TG           + +   A      A +    H+   + RL      R      C +   R     
Subjt:  GGGKRVPGFRCEIADTQDC-----GGGGGASEKTG-----------LCEQAMAQNDRRRAPLGADLHQALGEHRL------RQPITPICSSSPQR-----

Query:  ---FRRLHSLIIWPLTKPQSSSSTSSSTSSSSSSSWSPFLAMIGSKPPARWGKDEVHLSLSLL
           FRRLHSL IWPLTKPQ+ S+++S++SSSSSS WS F AMIGSKPP RWGKDEVHLSLSLL
Subjt:  ---FRRLHSLIIWPLTKPQSSSSTSSSTSSSSSSSWSPFLAMIGSKPPARWGKDEVHLSLSLL

XP_038900230.1 F-box protein GID2 [Benincasa hispida]5.4e-2150.31Show/hide
Query:  GGGKRVPGFRCEIADTQDCGGGGGASEKTG-------LCEQAMAQNDRRRAPLGA----DLHQALGEHRL------RQPITPICSSSPQR--------FR
        G G R  G +   A+TQDC GGG  S++TG       L  +     D R   + A      H+   + RL      R      C +   R        FR
Subjt:  GGGKRVPGFRCEIADTQDCGGGGGASEKTG-------LCEQAMAQNDRRRAPLGA----DLHQALGEHRL------RQPITPICSSSPQR--------FR

Query:  RLHSLIIWPLTKPQ---SSSSTSSSTSSSSSSSWSPFLAMIGSKPPARWGKDEVHLSLSLL
        RLHSL IWPLTKPQ   SSSSTSSS SSSSS+SWSPF AMIGSKPPARWGKDEVHLSLSLL
Subjt:  RLHSLIIWPLTKPQ---SSSSTSSSTSSSSSSSWSPFLAMIGSKPPARWGKDEVHLSLSLL

TrEMBL top hitse value%identityAlignment
A0A0A0L2H5 F-box domain-containing protein6.1e-1882.35Show/hide
Query:  FRRLHSLIIWPLTKPQSSSSTSSSTSSSSSS--------SWSPFLAMIGSKPPARWGKDEVHLSLSLL
        FRRLHSL IWPLTKPQSSSS+SSS+SSSSSS        SWSPF AMIGSKPPARWGKDEVHLSLSLL
Subjt:  FRRLHSLIIWPLTKPQSSSSTSSSTSSSSSS--------SWSPFLAMIGSKPPARWGKDEVHLSLSLL

A0A5A7VFE5 F-box protein GID2-like7.9e-1881.16Show/hide
Query:  FRRLHSLIIWPLTKPQSS---------SSTSSSTSSSSSSSWSPFLAMIGSKPPARWGKDEVHLSLSLL
        FRRLHSL IWPLTKPQSS         SSTSSS SSSSS+SWSPF AMIGSKPPARWGKDEVHLSLSLL
Subjt:  FRRLHSLIIWPLTKPQSS---------SSTSSSTSSSSSSSWSPFLAMIGSKPPARWGKDEVHLSLSLL

A0A6J1FMD6 F-box protein GID2-like6.1e-1844.65Show/hide
Query:  GGGKRVPGFRCEIADTQDC-GGGGGASEKTG-----------LCEQAMAQNDRRRAPLGADLHQALGEHRL------RQPITPICSSSPQR--------F
        G G+R  G +  + D+ DC GGGGGAS++ G           + +   A      A +    H+   + RL      R      C +   R        F
Subjt:  GGGKRVPGFRCEIADTQDC-GGGGGASEKTG-----------LCEQAMAQNDRRRAPLGADLHQALGEHRL------RQPITPICSSSPQR--------F

Query:  RRLHSLIIWPLTKPQSSSSTSSSTSSSSSSSWSPFLAMIGSKPPARWGKDEVHLSLSLL
        RRLHSL IWPLTKPQ+ S+++S++SSSSSS WS F AMIGSKPP RWGKDEVHLSLSLL
Subjt:  RRLHSLIIWPLTKPQSSSSTSSSTSSSSSSSWSPFLAMIGSKPPARWGKDEVHLSLSLL

A0A6J1ILD7 F-box protein GID2-like9.4e-1990.32Show/hide
Query:  FRRLHSLIIWPLTKPQSSSSTSSSTSSSSSSS--WSPFLAMIGSKPPARWGKDEVHLSLSLL
        FRRLHSL IWPLTKPQSSSS+SSSTSSS+SSS  WSPF AMIGSKPPARWGKDEVHLSLSLL
Subjt:  FRRLHSLIIWPLTKPQSSSSTSSSTSSSSSSS--WSPFLAMIGSKPPARWGKDEVHLSLSLL

A0A6J1J293 F-box protein GID2-like3.6e-1844.17Show/hide
Query:  GGGKRVPGFRCEIADTQDC-----GGGGGASEKTG-----------LCEQAMAQNDRRRAPLGADLHQALGEHRL------RQPITPICSSSPQR-----
        G G+R  G +  + D+ DC     GGGGGAS++TG           + +   A      A +    H+   + RL      R      C +   R     
Subjt:  GGGKRVPGFRCEIADTQDC-----GGGGGASEKTG-----------LCEQAMAQNDRRRAPLGADLHQALGEHRL------RQPITPICSSSPQR-----

Query:  ---FRRLHSLIIWPLTKPQSSSSTSSSTSSSSSSSWSPFLAMIGSKPPARWGKDEVHLSLSLL
           FRRLHSL IWPLTKPQ+ S+++S++SSSSSS WS F AMIGSKPP RWGKDEVHLSLSLL
Subjt:  ---FRRLHSLIIWPLTKPQSSSSTSSSTSSSSSSSWSPFLAMIGSKPPARWGKDEVHLSLSLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCCCTACCCTCTCTATGGCACGAGAGGGACTTCTGTTTGTTGGTTGGACCTCAAACAGGTTGTTCATTAGAGGAGCACTGGTACTTAAGGACAAAGAGGTTCTGTA
CGTTTCCGCTGCGAAAGGGCTCTTATCCCTTCACCTCCCTCCTCCTCGGTTTCCCACCAGAAATCGGGGAGGAGGGAAGAGGGTCCCCGGTTTTCGGTGCGAAATCGCTG
ACACCCAAGATTGTGGAGGAGGAGGAGGCGCCTCCGAGAAGACTGGCCTGTGTGAGCAAGCAATGGCACAAAACGACCGAAGACGAGCGCCTTTGGGAGCTGATCTGCAC
CAGGCACTGGGCGAACACCGGCTGCGGCAACCAATAACTCCGATCTGTAGTTCTAGCCCTCAGCGGTTCCGTCGCCTCCACTCACTCATCATCTGGCCACTTACCAAGCC
CCAATCGTCATCGTCCACGTCTTCATCGACTTCGTCCTCTTCGTCGTCGTCTTGGTCTCCGTTTCTGGCGATGATTGGGTCGAAACCGCCGGCCCGGTGGGGGAAGGATG
AGGTCCATCTGTCGTTGTCGCTTCTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCCCTACCCTCTCTATGGCACGAGAGGGACTTCTGTTTGTTGGTTGGACCTCAAACAGGTTGTTCATTAGAGGAGCACTGGTACTTAAGGACAAAGAGGTTCTGTA
CGTTTCCGCTGCGAAAGGGCTCTTATCCCTTCACCTCCCTCCTCCTCGGTTTCCCACCAGAAATCGGGGAGGAGGGAAGAGGGTCCCCGGTTTTCGGTGCGAAATCGCTG
ACACCCAAGATTGTGGAGGAGGAGGAGGCGCCTCCGAGAAGACTGGCCTGTGTGAGCAAGCAATGGCACAAAACGACCGAAGACGAGCGCCTTTGGGAGCTGATCTGCAC
CAGGCACTGGGCGAACACCGGCTGCGGCAACCAATAACTCCGATCTGTAGTTCTAGCCCTCAGCGGTTCCGTCGCCTCCACTCACTCATCATCTGGCCACTTACCAAGCC
CCAATCGTCATCGTCCACGTCTTCATCGACTTCGTCCTCTTCGTCGTCGTCTTGGTCTCCGTTTCTGGCGATGATTGGGTCGAAACCGCCGGCCCGGTGGGGGAAGGATG
AGGTCCATCTGTCGTTGTCGCTTCTATGA
Protein sequenceShow/hide protein sequence
MGPTLSMAREGLLFVGWTSNRLFIRGALVLKDKEVLYVSAAKGLLSLHLPPPRFPTRNRGGGKRVPGFRCEIADTQDCGGGGGASEKTGLCEQAMAQNDRRRAPLGADLH
QALGEHRLRQPITPICSSSPQRFRRLHSLIIWPLTKPQSSSSTSSSTSSSSSSSWSPFLAMIGSKPPARWGKDEVHLSLSLL