CuGenDBv2

Gene ID	Spg026505
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Rep_fac-A_C domain-containing protein
Genome location	scaffold8:2254571..2263183
RNA-Seq Expression	Spg026505
Synteny	Spg026505
Gene Ontology terms	NA
InterPro domains	IPR012340 - Nucleic acid-binding, OB-fold IPR013955 - Replication factor A, C-terminal

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KGN46888.2 hypothetical protein Csa_020864 [Cucumis sativus]

9.9e-73

87.26

Show/hide

Query:  MANVQPITTMCAVIAMDHTKFCYRACSICERTLPDNPSSLCKFCNFNAFNPGSSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFNFAKLH
        M N +PITTMCAV+AMD+T FCYR CSICERTLP NPSSLCKFCNFNAFNPGSSSSKR+FRLLMSIATDKKVQTVICFDR ARVLFGCSADEFF+FAKLH
Subjt:  MANVQPITTMCAVIAMDHTKFCYRACSICERTLPDNPSSLCKFCNFNAFNPGSSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFNFAKLH

Query:  PFAAETVNEILEGEMFRMTISKPKNGNAQHLRVVQVVPLSSGFQPAILRLRELYGID
        PFAAETV+EILEGEM R+TISKPKNGNAQH RVVQ+VPLSS FQPAI+RLRELYG++
Subjt:  PFAAETVNEILEGEMFRMTISKPKNGNAQHLRVVQVVPLSSGFQPAILRLRELYGID

XP_022140388.1 uncharacterized protein LOC111011075 [Momordica charantia]

2.6e-73

89.74

Show/hide

Query:  MANVQPITTMCAVIAMDHTKFCYRACSICERTLPDNP-SSLCKFCNFNAFNPGSSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFNFAKL
        M N +PITTMC V+AMDH+ FCYR CSICER+LPDNP SSLCKFCNFNAFNPG SSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFF+FAKL
Subjt:  MANVQPITTMCAVIAMDHTKFCYRACSICERTLPDNP-SSLCKFCNFNAFNPGSSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFNFAKL

Query:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHLRVVQVVPLSSGFQPAILRLRELYG
        HPFAAET +EILEGEMFRMTISKPKNGNAQH RVVQVVPLSSGFQPAI+RLRELYG
Subjt:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHLRVVQVVPLSSGFQPAILRLRELYG

XP_022943427.1 uncharacterized protein LOC111448196 isoform X1 [Cucurbita moschata]

3.4e-73

89.17

Show/hide

Query:  MANVQPITTMCAVIAMDHTKFCYRACSICERTLPDNPS-SLCKFCNFNAFNPGSSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFNFAKL
        M N +PITTMCAVIAMDHT FCYR CSICERTLP NP  SLCKFCNFNAFNPGSSSSKR+FR+LMSIATDKKVQTVICFDR ARVLFGCSADEFF+FAKL
Subjt:  MANVQPITTMCAVIAMDHTKFCYRACSICERTLPDNPS-SLCKFCNFNAFNPGSSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFNFAKL

Query:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHLRVVQVVPLSSGFQPAILRLRELYGI
        HPFAAE V+EILEGEMFRMTISKPKNGNAQH RVVQ+VPLSSGFQPAILRLRELYG+
Subjt:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHLRVVQVVPLSSGFQPAILRLRELYGI

XP_022943430.1 uncharacterized protein LOC111448196 isoform X2 [Cucurbita moschata]

3.4e-73

89.17

Show/hide

Query:  MANVQPITTMCAVIAMDHTKFCYRACSICERTLPDNPS-SLCKFCNFNAFNPGSSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFNFAKL
        M N +PITTMCAVIAMDHT FCYR CSICERTLP NP  SLCKFCNFNAFNPGSSSSKR+FR+LMSIATDKKVQTVICFDR ARVLFGCSADEFF+FAKL
Subjt:  MANVQPITTMCAVIAMDHTKFCYRACSICERTLPDNPS-SLCKFCNFNAFNPGSSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFNFAKL

Query:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHLRVVQVVPLSSGFQPAILRLRELYGI
        HPFAAE V+EILEGEMFRMTISKPKNGNAQH RVVQ+VPLSSGFQPAILRLRELYG+
Subjt:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHLRVVQVVPLSSGFQPAILRLRELYGI

XP_038901726.1 uncharacterized protein LOC120088466 [Benincasa hispida]

5.8e-73

89.74

Show/hide

Query:  MANVQPITTMCAVIAMDHTKFCYRACSICERTLPDNP-SSLCKFCNFNAFNPGSSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFNFAKL
        M N +PITTMCAVIAMDHT FCYR CSICERTLPDNP SS+CKFCNFNAFNP  SSSKR+FRLLMSIATD+KVQTVICFDRAARVLFGCSADEFF+FAKL
Subjt:  MANVQPITTMCAVIAMDHTKFCYRACSICERTLPDNP-SSLCKFCNFNAFNPGSSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFNFAKL

Query:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHLRVVQVVPLSSGFQPAILRLRELYG
        HPFAAETV+EILEGEMFR+TISKPKNGNAQH RVVQVVPLSSGFQPAI RLRELYG
Subjt:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHLRVVQVVPLSSGFQPAILRLRELYG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KEN7 Uncharacterized protein

1.4e-72

88.39

Show/hide

Query:  MANVQPITTMCAVIAMDHTKFCYRACSICERTLPDNPSSLCKFCNFNAFNPGSSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFNFAKLH
        M N +PITTMCAV+AMD+T FCYR CSICERTLP NPSSLCKFCNFNAFNPGSSSSKR+FRLLMSIATDKKVQTVICFDR ARVLFGCSADEFF+FAKLH
Subjt:  MANVQPITTMCAVIAMDHTKFCYRACSICERTLPDNPSSLCKFCNFNAFNPGSSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFNFAKLH

Query:  PFAAETVNEILEGEMFRMTISKPKNGNAQHLRVVQVVPLSSGFQPAILRLRELYG
        PFAAETV+EILEGEM R+TISKPKNGNAQH RVVQ+VPLSS FQPAI+RLRELYG
Subjt:  PFAAETVNEILEGEMFRMTISKPKNGNAQHLRVVQVVPLSSGFQPAILRLRELYG

A0A6J1CHW5 uncharacterized protein LOC111011075

1.3e-73

89.74

Show/hide

Query:  MANVQPITTMCAVIAMDHTKFCYRACSICERTLPDNP-SSLCKFCNFNAFNPGSSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFNFAKL
        M N +PITTMC V+AMDH+ FCYR CSICER+LPDNP SSLCKFCNFNAFNPG SSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFF+FAKL
Subjt:  MANVQPITTMCAVIAMDHTKFCYRACSICERTLPDNP-SSLCKFCNFNAFNPGSSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFNFAKL

Query:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHLRVVQVVPLSSGFQPAILRLRELYG
        HPFAAET +EILEGEMFRMTISKPKNGNAQH RVVQVVPLSSGFQPAI+RLRELYG
Subjt:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHLRVVQVVPLSSGFQPAILRLRELYG

A0A6J1FWW9 uncharacterized protein LOC111448196 isoform X1

1.7e-73

89.17

Show/hide

Query:  MANVQPITTMCAVIAMDHTKFCYRACSICERTLPDNPS-SLCKFCNFNAFNPGSSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFNFAKL
        M N +PITTMCAVIAMDHT FCYR CSICERTLP NP  SLCKFCNFNAFNPGSSSSKR+FR+LMSIATDKKVQTVICFDR ARVLFGCSADEFF+FAKL
Subjt:  MANVQPITTMCAVIAMDHTKFCYRACSICERTLPDNPS-SLCKFCNFNAFNPGSSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFNFAKL

Query:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHLRVVQVVPLSSGFQPAILRLRELYGI
        HPFAAE V+EILEGEMFRMTISKPKNGNAQH RVVQ+VPLSSGFQPAILRLRELYG+
Subjt:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHLRVVQVVPLSSGFQPAILRLRELYGI

A0A6J1FXT2 uncharacterized protein LOC111448196 isoform X2

1.7e-73

89.17

Show/hide

Query:  MANVQPITTMCAVIAMDHTKFCYRACSICERTLPDNPS-SLCKFCNFNAFNPGSSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFNFAKL
        M N +PITTMCAVIAMDHT FCYR CSICERTLP NP  SLCKFCNFNAFNPGSSSSKR+FR+LMSIATDKKVQTVICFDR ARVLFGCSADEFF+FAKL
Subjt:  MANVQPITTMCAVIAMDHTKFCYRACSICERTLPDNPS-SLCKFCNFNAFNPGSSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFNFAKL

Query:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHLRVVQVVPLSSGFQPAILRLRELYGI
        HPFAAE V+EILEGEMFRMTISKPKNGNAQH RVVQ+VPLSSGFQPAILRLRELYG+
Subjt:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHLRVVQVVPLSSGFQPAILRLRELYGI

A0A6J1J8M2 uncharacterized protein LOC111483608 isoform X3

1.8e-72

88.54

Show/hide

Query:  MANVQPITTMCAVIAMDHTKFCYRACSICERTLPDNPS-SLCKFCNFNAFNPGSSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFNFAKL
        M N + ITTMCAVIAMDHT FCYR CSICERTLP NP  SLCKFCNFNAFNPGSSSSKR+FR+LMSIATDKKVQTVICFDR ARVLFGCSADEFF+FAKL
Subjt:  MANVQPITTMCAVIAMDHTKFCYRACSICERTLPDNPS-SLCKFCNFNAFNPGSSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFNFAKL

Query:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHLRVVQVVPLSSGFQPAILRLRELYGI
        HPFAAE V+EILEGEMFRMTISKPKNGNAQH RVVQ+VPLSSGFQPAILRLRELYG+
Subjt:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHLRVVQVVPLSSGFQPAILRLRELYGI

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G28105.1 CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Replication factor A, C-terminal (InterPro:IPR013955); Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

4.6e-44

58.28

Show/hide

Query:  TTMCAVIAMDHTKFCYRACSICERTLP-DN----PSSLCKFCNFNAFNPGSSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFNFAKLHPF
        T +C ++A+D T +CYR CS C+R LP DN     SS CKFC        S   K L+R+LMSIATD  V+TVICFDRAA VLFGCSADEFF+F KL+P 
Subjt:  TTMCAVIAMDHTKFCYRACSICERTLP-DN----PSSLCKFCNFNAFNPGSSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFNFAKLHPF

Query:  AAETVNEILEGEMFRMTISKPKNGNAQHLRVVQVVPLSSGFQPAILRLREL
        AA  VN++ +GEM RMT+++P+N NAQH+RV  VVPL SG QPAI+ LR++
Subjt:  AAETVNEILEGEMFRMTISKPKNGNAQHLRVVQVVPLSSGFQPAILRLREL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCAAATGTTCAGCCAATAACAACCATGTGCGCAGTGATAGCCATGGATCACACCAAGTTCTGTTATAGGGCTTGTTCTATCTGTGAGAGGACTCTCCCTGATAACCC
CTCTTCTCTCTGCAAATTCTGCAACTTCAACGCCTTCAATCCCGGATCCTCCTCCTCCAAACGCCTCTTTCGTCTCCTTATGTCAATTGCAACGGATAAGAAAGTACAAA
CTGTTATATGCTTTGATAGGGCTGCTAGGGTTCTGTTTGGTTGCTCTGCTGATGAGTTTTTCAACTTTGCTAAGCTACATCCTTTTGCTGCTGAAACTGTAAATGAAATT
TTGGAGGGAGAGATGTTTAGAATGACGATCTCTAAACCCAAGAATGGCAATGCACAACACTTGAGAGTTGTACAAGTTGTTCCTCTGAGTTCAGGATTTCAACCAGCAAT
TCTGAGATTGAGGGAATTGTATGGGATAGATTTGGAAGCTCTTGAATTCTCTTCAATTGTATTGTTGTTTATTTCGTGGGGTGGTGTATTTATAGTGAAGGATACTCGTC
ATCGTCGTCGAGGTTCCATTTCCTTCATTCCTCGTGTCGTTGTCGCCGTCGTGATCTCTGCTATTGCCGTCGCCGTCGAGGTTTCAGATCTGATCACGTTAGGGAAAGGA
TCTATCCTAATGCTCGTGATGCCAATTATCGTGGAGCTTGATGCTTTGGCTTGTTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MANVQPITTMCAVIAMDHTKFCYRACSICERTLPDNPSSLCKFCNFNAFNPGSSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFNFAKLHPFAAETVNEI
LEGEMFRMTISKPKNGNAQHLRVVQVVPLSSGFQPAILRLRELYGIDLEALEFSSIVLLFISWGGVFIVKDTRHRRRGSISFIPRVVVAVVISAIAVAVEVSDLITLGKG
SILMLVMPIIVELDALAC

Spg026505 (gene) of Sponge gourd (cylindrica) v1 genome