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Spg026534 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026534
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationscaffold8:2166597..2167385
RNA-Seq ExpressionSpg026534
SyntenySpg026534
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041225.1 uncharacterized protein E6C27_scaffold128G001860 [Cucumis melo var. makuwa]3.1e-1440Show/hide
Query:  AQRQFEERLEGSEKEIADVKQALMSFGKSLEQMLIEMKDNQRAIMALMAGQAAKSGEGELNRVQKDLASG-------DRCKFKKLDMPVFTGENPDSWLF
        AQRQ EERLEG+EKE+  +K+ ++   KS++++  E+++NQ       +G +  S      ++++   +G       DR K+KKL+MP+F GENP+SW++
Subjt:  AQRQFEERLEGSEKEIADVKQALMSFGKSLEQMLIEMKDNQRAIMALMAGQAAKSGEGELNRVQKDLASG-------DRCKFKKLDMPVFTGENPDSWLF

Query:  RAERYFELHQLTEAE
        RAE +FE++ L EAE
Subjt:  RAERYFELHQLTEAE

KAA0056659.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.4e-1440.34Show/hide
Query:  AQRQFEERLEGSEKEIADVKQALMSFGKSLEQMLIEMKD-----------NQRAIMALMAGQAAKSGEGELNRVQKDLASGDRCKFKKLDMPVFTGENPD
        AQRQ EERLEG+EKE+  +K+ ++   KS++++  E++D           + R+IM +          GE++  Q      DR K+KKL+MP+F GENP+
Subjt:  AQRQFEERLEGSEKEIADVKQALMSFGKSLEQMLIEMKD-----------NQRAIMALMAGQAAKSGEGELNRVQKDLASGDRCKFKKLDMPVFTGENPD

Query:  SWLFRAERYFELHQLTEAE
        SW++RAE +FE++ L EAE
Subjt:  SWLFRAERYFELHQLTEAE

KAA0063772.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-1438.57Show/hide
Query:  LICNVFVLLRCALRPGARL-LKHWAQRQFEERLEGSEKEIADVKQALMSFGKSLEQMLIEMKDNQRAIMALMAGQA--------AKSGEGELNRVQKDLA
        ++   F   R A +  A L ++  AQRQ EER++G+EKEI  +K+ ++   K++E++  EMK++Q       +G +         K  E EL   + ++ 
Subjt:  LICNVFVLLRCALRPGARL-LKHWAQRQFEERLEGSEKEIADVKQALMSFGKSLEQMLIEMKDNQRAIMALMAGQA--------AKSGEGELNRVQKDLA

Query:  SGDRCKFKKLDMPVFTGENPDSWLFRAERYFELHQLTEAE
        S DR K+KKL MP+F GENP+SW++RAE +FE++ L EAE
Subjt:  SGDRCKFKKLDMPVFTGENPDSWLFRAERYFELHQLTEAE

XP_031742100.1 uncharacterized protein LOC116404055 [Cucumis sativus]3.1e-1439.5Show/hide
Query:  AQRQFEERLEGSEKEIADVKQALMSFGKSLEQMLIEMKDNQRA-----------IMALMAGQAAKSGEGELNRVQKDLASGDRCKFKKLDMPVFTGENPD
        AQRQ E+R+EG+EKEI  +K+ ++   KS+++M  E+++N  A           I   + G+  ++G      V+   +S DR K+KKL+MP+FTG NP+
Subjt:  AQRQFEERLEGSEKEIADVKQALMSFGKSLEQMLIEMKDNQRA-----------IMALMAGQAAKSGEGELNRVQKDLASGDRCKFKKLDMPVFTGENPD

Query:  SWLFRAERYFELHQLTEAE
        SW +RAE +F+++ L EAE
Subjt:  SWLFRAERYFELHQLTEAE

XP_031745528.1 uncharacterized protein LOC116405915 [Cucumis sativus]1.8e-1441.74Show/hide
Query:  AQRQFEERLEGSEKEIADVKQALMSFGKSLEQMLIEMKDN----QRAIMALMAGQAAK-SGEGELNRVQKD--LASGDRCKFKKLDMPVFTGENPDSWLF
        AQRQ E+R++G+EKEI  +K+ L+   K++E+M  ++++N    +R       G   K  G+ E   V  +  L  GDR K+KKL+MP+F GENP+SW++
Subjt:  AQRQFEERLEGSEKEIADVKQALMSFGKSLEQMLIEMKDN----QRAIMALMAGQAAK-SGEGELNRVQKD--LASGDRCKFKKLDMPVFTGENPDSWLF

Query:  RAERYFELHQLTEAE
        RAE +FE++ L E E
Subjt:  RAERYFELHQLTEAE

TrEMBL top hitse value%identityAlignment
A0A5A7TII1 Uncharacterized protein1.5e-1440Show/hide
Query:  AQRQFEERLEGSEKEIADVKQALMSFGKSLEQMLIEMKDNQRAIMALMAGQAAKSGEGELNRVQKDLASG-------DRCKFKKLDMPVFTGENPDSWLF
        AQRQ EERLEG+EKE+  +K+ ++   KS++++  E+++NQ       +G +  S      ++++   +G       DR K+KKL+MP+F GENP+SW++
Subjt:  AQRQFEERLEGSEKEIADVKQALMSFGKSLEQMLIEMKDNQRAIMALMAGQAAKSGEGELNRVQKDLASG-------DRCKFKKLDMPVFTGENPDSWLF

Query:  RAERYFELHQLTEAE
        RAE +FE++ L EAE
Subjt:  RAERYFELHQLTEAE

A0A5A7UT21 Ty3/gypsy retrotransposon protein6.7e-1540.34Show/hide
Query:  AQRQFEERLEGSEKEIADVKQALMSFGKSLEQMLIEMKD-----------NQRAIMALMAGQAAKSGEGELNRVQKDLASGDRCKFKKLDMPVFTGENPD
        AQRQ EERLEG+EKE+  +K+ ++   KS++++  E++D           + R+IM +          GE++  Q      DR K+KKL+MP+F GENP+
Subjt:  AQRQFEERLEGSEKEIADVKQALMSFGKSLEQMLIEMKD-----------NQRAIMALMAGQAAKSGEGELNRVQKDLASGDRCKFKKLDMPVFTGENPD

Query:  SWLFRAERYFELHQLTEAE
        SW++RAE +FE++ L EAE
Subjt:  SWLFRAERYFELHQLTEAE

A0A5A7V689 Retrotransposon protein5.1e-1538.57Show/hide
Query:  LICNVFVLLRCALRPGARL-LKHWAQRQFEERLEGSEKEIADVKQALMSFGKSLEQMLIEMKDNQRAIMALMAGQA--------AKSGEGELNRVQKDLA
        ++   F   R A +  A L ++  AQRQ EER++G+EKEI  +K+ ++   K++E++  EMK++Q       +G +         K  E EL   + ++ 
Subjt:  LICNVFVLLRCALRPGARL-LKHWAQRQFEERLEGSEKEIADVKQALMSFGKSLEQMLIEMKDNQRAIMALMAGQA--------AKSGEGELNRVQKDLA

Query:  SGDRCKFKKLDMPVFTGENPDSWLFRAERYFELHQLTEAE
        S DR K+KKL MP+F GENP+SW++RAE +FE++ L EAE
Subjt:  SGDRCKFKKLDMPVFTGENPDSWLFRAERYFELHQLTEAE

A0A5D3CXP0 Uncharacterized protein1.5e-1440Show/hide
Query:  AQRQFEERLEGSEKEIADVKQALMSFGKSLEQMLIEMKDNQRAIMALMAGQAAKSGEGELNRVQKDLASG-------DRCKFKKLDMPVFTGENPDSWLF
        AQRQ EERLEG+EKE+  +K+ ++   KS++++  E+++NQ       +G +  S      ++++   +G       DR K+KKL+MP+F GENP+SW++
Subjt:  AQRQFEERLEGSEKEIADVKQALMSFGKSLEQMLIEMKDNQRAIMALMAGQAAKSGEGELNRVQKDLASG-------DRCKFKKLDMPVFTGENPDSWLF

Query:  RAERYFELHQLTEAE
        RAE +FE++ L EAE
Subjt:  RAERYFELHQLTEAE

A0A5D3E4T6 Retrotransposon protein3.3e-1441.38Show/hide
Query:  AQRQFEERLEGSEKEIADVKQALMSFGKSLEQMLIEMKDNQRAIMALMAGQA--------AKSGEGELNRVQKDLASGDRCKFKKLDMPVFTGENPDSWL
        AQRQ EE ++G+EKEI  +K+ ++   K++E++  EMK++Q       +G +         K  E EL   + ++AS DR K+KKL+MP+F GENP+SW+
Subjt:  AQRQFEERLEGSEKEIADVKQALMSFGKSLEQMLIEMKDNQRAIMALMAGQA--------AKSGEGELNRVQKDLASGDRCKFKKLDMPVFTGENPDSWL

Query:  FRAERYFELHQLTEAE
        +RAE +F+++ L EAE
Subjt:  FRAERYFELHQLTEAE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGGCGATGGTGGAGCTCCTAGCTACGGTGAGGCACGAACGAACGAGGGAAATGGGTTTTTGATTTGCAATGTGTTCGTGCTTTTACGTTGCGCCTTGCGCCCGGG
CGCGCGCCTTTTAAAACACTGGGCTCAACGTCAGTTTGAAGAAAGATTAGAGGGTAGTGAAAAAGAGATCGCAGATGTCAAGCAAGCTCTGATGAGTTTCGGCAAGAGCT
TGGAGCAAATGTTGATAGAGATGAAGGATAACCAACGCGCGATAATGGCATTGATGGCTGGCCAGGCTGCAAAGTCAGGGGAAGGAGAGTTGAATCGAGTTCAGAAGGAT
CTTGCCAGCGGTGATCGATGTAAGTTTAAGAAGCTGGACATGCCGGTCTTCACCGGCGAGAACCCCGACTCATGGTTATTTCGAGCAGAACGCTATTTTGAGCTTCATCA
ACTTACGGAAGCAGAGAACAACCATTATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTGGCGATGGTGGAGCTCCTAGCTACGGTGAGGCACGAACGAACGAGGGAAATGGGTTTTTGATTTGCAATGTGTTCGTGCTTTTACGTTGCGCCTTGCGCCCGGG
CGCGCGCCTTTTAAAACACTGGGCTCAACGTCAGTTTGAAGAAAGATTAGAGGGTAGTGAAAAAGAGATCGCAGATGTCAAGCAAGCTCTGATGAGTTTCGGCAAGAGCT
TGGAGCAAATGTTGATAGAGATGAAGGATAACCAACGCGCGATAATGGCATTGATGGCTGGCCAGGCTGCAAAGTCAGGGGAAGGAGAGTTGAATCGAGTTCAGAAGGAT
CTTGCCAGCGGTGATCGATGTAAGTTTAAGAAGCTGGACATGCCGGTCTTCACCGGCGAGAACCCCGACTCATGGTTATTTCGAGCAGAACGCTATTTTGAGCTTCATCA
ACTTACGGAAGCAGAGAACAACCATTATTAG
Protein sequenceShow/hide protein sequence
MVGDGGAPSYGEARTNEGNGFLICNVFVLLRCALRPGARLLKHWAQRQFEERLEGSEKEIADVKQALMSFGKSLEQMLIEMKDNQRAIMALMAGQAAKSGEGELNRVQKD
LASGDRCKFKKLDMPVFTGENPDSWLFRAERYFELHQLTEAENNHY