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Spg026536 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026536
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold8:2233339..2237125
RNA-Seq ExpressionSpg026536
SyntenySpg026536
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037267.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.1e-0435.14Show/hide
Query:  DSNERITKMERKLNLLMKAVEESRLFRDSKRKIKSQNNKGKKKTRSQR--EALETVTCHIVDVVEDEDVPSNSSGTVTYLGDLSFFSIKDLLSLPQEAQS
        D    I    RK        +ES  + +  R  K+Q NK KKKT+  +  E+L  V CH ++  E+E +P  S        D+S F++ DLLSLPQE ++
Subjt:  DSNERITKMERKLNLLMKAVEESRLFRDSKRKIKSQNNKGKKKTRSQR--EALETVTCHIVDVVEDEDVPSNSSGTVTYLGDLSFFSIKDLLSLPQEAQS

Query:  VLIDTLMEDKA
        +LI+ L+   A
Subjt:  VLIDTLMEDKA

KAA0042067.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.3e-0536.04Show/hide
Query:  DSNERITKMERKLNLLMKAVEESRLFRDSKRKIKSQNNKGKKKTRSQR--EALETVTCHIVDVVEDEDVPSNSSGTVTYLGDLSFFSIKDLLSLPQEAQS
        D    I    RK        +ESR +R+ +R  K++ NK KKKT+  +  E L  V CH ++  E+E +P  S        DLS F++ DLLSLPQ+ + 
Subjt:  DSNERITKMERKLNLLMKAVEESRLFRDSKRKIKSQNNKGKKKTRSQR--EALETVTCHIVDVVEDEDVPSNSSGTVTYLGDLSFFSIKDLLSLPQEAQS

Query:  VLIDTLMEDKA
        +LI+ L+   A
Subjt:  VLIDTLMEDKA

KAA0046265.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]8.7e-0532.84Show/hide
Query:  KMERKLNLLMKAVEESRLFRDSKRKIKSQNNKGKKKTRS--------------------------------QREALETVTCHIVDVVEDEDVPSNSSGTV
        +M+RK  L  K   ES  +R+ +R+ K+Q NK KKKTR                                 Q E  E +TCH ++  E+E +PS S    
Subjt:  KMERKLNLLMKAVEESRLFRDSKRKIKSQNNKGKKKTRS--------------------------------QREALETVTCHIVDVVEDEDVPSNSSGTV

Query:  TYLGDLSFFSIKDLLSLPQEAQSVLIDTLMEDKA
            +LS F++ DLLSLPQE +++LI+ L+   A
Subjt:  TYLGDLSFFSIKDLLSLPQEAQSVLIDTLMEDKA

KAA0054506.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.3e-0447.62Show/hide
Query:  QREALETVTCHIVDVVEDEDVPSNSSGTVTYLGDLSFFSIKDLLSLPQEAQSVLIDTLMEDKA
        Q E LE V CH ++ VE+E +PS S      L DLS F++ DLLSLPQE +++LI+ L+   A
Subjt:  QREALETVTCHIVDVVEDEDVPSNSSGTVTYLGDLSFFSIKDLLSLPQEAQSVLIDTLMEDKA

XP_031737045.1 uncharacterized protein LOC116402134 [Cucumis sativus]9.7e-0442.86Show/hide
Query:  QREALETVTCHIVDVVEDEDVPSNSSGTVTYLGDLSFFSIKDLLSLPQEAQSVLIDTLMEDKA
        Q E  E V CH ++  E+E +P  S        DLS F+++DLLSLPQE +++LID L+  +A
Subjt:  QREALETVTCHIVDVVEDEDVPSNSSGTVTYLGDLSFFSIKDLLSLPQEAQSVLIDTLMEDKA

TrEMBL top hitse value%identityAlignment
A0A5A7T6S8 Ty3-gypsy retrotransposon protein5.5e-0535.14Show/hide
Query:  DSNERITKMERKLNLLMKAVEESRLFRDSKRKIKSQNNKGKKKTRSQR--EALETVTCHIVDVVEDEDVPSNSSGTVTYLGDLSFFSIKDLLSLPQEAQS
        D    I    RK        +ES  + +  R  K+Q NK KKKT+  +  E+L  V CH ++  E+E +P  S        D+S F++ DLLSLPQE ++
Subjt:  DSNERITKMERKLNLLMKAVEESRLFRDSKRKIKSQNNKGKKKTRSQR--EALETVTCHIVDVVEDEDVPSNSSGTVTYLGDLSFFSIKDLLSLPQEAQS

Query:  VLIDTLMEDKA
        +LI+ L+   A
Subjt:  VLIDTLMEDKA

A0A5A7TJZ7 Retrotransposon gag protein6.5e-0636.04Show/hide
Query:  DSNERITKMERKLNLLMKAVEESRLFRDSKRKIKSQNNKGKKKTRSQR--EALETVTCHIVDVVEDEDVPSNSSGTVTYLGDLSFFSIKDLLSLPQEAQS
        D    I    RK        +ESR +R+ +R  K++ NK KKKT+  +  E L  V CH ++  E+E +P  S        DLS F++ DLLSLPQ+ + 
Subjt:  DSNERITKMERKLNLLMKAVEESRLFRDSKRKIKSQNNKGKKKTRSQR--EALETVTCHIVDVVEDEDVPSNSSGTVTYLGDLSFFSIKDLLSLPQEAQS

Query:  VLIDTLMEDKA
        +LI+ L+   A
Subjt:  VLIDTLMEDKA

A0A5A7TY01 Ty3-gypsy retrotransposon protein4.2e-0532.84Show/hide
Query:  KMERKLNLLMKAVEESRLFRDSKRKIKSQNNKGKKKTRS--------------------------------QREALETVTCHIVDVVEDEDVPSNSSGTV
        +M+RK  L  K   ES  +R+ +R+ K+Q NK KKKTR                                 Q E  E +TCH ++  E+E +PS S    
Subjt:  KMERKLNLLMKAVEESRLFRDSKRKIKSQNNKGKKKTRS--------------------------------QREALETVTCHIVDVVEDEDVPSNSSGTV

Query:  TYLGDLSFFSIKDLLSLPQEAQSVLIDTLMEDKA
            +LS F++ DLLSLPQE +++LI+ L+   A
Subjt:  TYLGDLSFFSIKDLLSLPQEAQSVLIDTLMEDKA

A0A5D3BE72 Ty3-gypsy retrotransposon protein6.1e-0432.84Show/hide
Query:  KMERKLNLLMKAVEESRLFRDSKRKIKSQNNKGKKKT--------------RSQR------------------EALETVTCHIVDVVEDEDVPSNSSGTV
        + +RK  L+ K   E R +R+ +R  K+Q NK KKKT              R+QR                  E  E V CH +D +E+E +P  S    
Subjt:  KMERKLNLLMKAVEESRLFRDSKRKIKSQNNKGKKKT--------------RSQR------------------EALETVTCHIVDVVEDEDVPSNSSGTV

Query:  TYLGDLSFFSIKDLLSLPQEAQSVLIDTLMEDKA
            DL  F++ DLLSLPQE +++LI+ L+   A
Subjt:  TYLGDLSFFSIKDLLSLPQEAQSVLIDTLMEDKA

A0A5D3BGX4 Retrotransposon gag protein1.6e-0447.62Show/hide
Query:  QREALETVTCHIVDVVEDEDVPSNSSGTVTYLGDLSFFSIKDLLSLPQEAQSVLIDTLMEDKA
        Q E LE V CH ++ VE+E +PS S      L DLS F++ DLLSLPQE +++LI+ L+   A
Subjt:  QREALETVTCHIVDVVEDEDVPSNSSGTVTYLGDLSFFSIKDLLSLPQEAQSVLIDTLMEDKA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTATTATGATGGCTGATGTGGACTCCAATGAAAGGATAACGAAAATGGAAAGAAAACTCAACCTTTTGATGAAGGCAGTTGAGGAATCTCGCTTATTTCGGGATAG
TAAAAGAAAGATCAAGTCACAGAATAATAAAGGAAAAAAGAAGACAAGAAGCCAAAGAGAGGCGCTTGAAACTGTCACTTGTCATATTGTGGACGTGGTAGAAGATGAGG
ATGTTCCTTCCAATTCATCGGGAACGGTTACATATCTAGGAGACTTATCATTCTTCAGCATAAAGGACCTGTTATCACTCCCTCAAGAGGCTCAGAGTGTCCTTATTGAT
ACATTGATGGAGGATAAGGCTGGGTACCTTATCCTGGTAACACTATGTGATACGGCCCGCTTTGTATTCGATACAGGCGTATTGATCCAAGGCGTCCATGTAGGAGACAT
GCGAGCGGGGACCAAATGGGGGGCTGGGGACATGACAACACAAGATGGAATTCACTCATTTCCGCTTCAAGGAGAAGTAGATGAGTGTTCCCTTAAGTGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTATTATGATGGCTGATGTGGACTCCAATGAAAGGATAACGAAAATGGAAAGAAAACTCAACCTTTTGATGAAGGCAGTTGAGGAATCTCGCTTATTTCGGGATAG
TAAAAGAAAGATCAAGTCACAGAATAATAAAGGAAAAAAGAAGACAAGAAGCCAAAGAGAGGCGCTTGAAACTGTCACTTGTCATATTGTGGACGTGGTAGAAGATGAGG
ATGTTCCTTCCAATTCATCGGGAACGGTTACATATCTAGGAGACTTATCATTCTTCAGCATAAAGGACCTGTTATCACTCCCTCAAGAGGCTCAGAGTGTCCTTATTGAT
ACATTGATGGAGGATAAGGCTGGGTACCTTATCCTGGTAACACTATGTGATACGGCCCGCTTTGTATTCGATACAGGCGTATTGATCCAAGGCGTCCATGTAGGAGACAT
GCGAGCGGGGACCAAATGGGGGGCTGGGGACATGACAACACAAGATGGAATTCACTCATTTCCGCTTCAAGGAGAAGTAGATGAGTGTTCCCTTAAGTGGTGA
Protein sequenceShow/hide protein sequence
MSIMMADVDSNERITKMERKLNLLMKAVEESRLFRDSKRKIKSQNNKGKKKTRSQREALETVTCHIVDVVEDEDVPSNSSGTVTYLGDLSFFSIKDLLSLPQEAQSVLID
TLMEDKAGYLILVTLCDTARFVFDTGVLIQGVHVGDMRAGTKWGAGDMTTQDGIHSFPLQGEVDECSLKW