CuGenDBv2

Gene ID	Spg026539
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Rep_fac-A_C domain-containing protein
Genome location	scaffold8:2243591..2246457
RNA-Seq Expression	Spg026539
Synteny	Spg026539
Gene Ontology terms	NA
InterPro domains	IPR012340 - Nucleic acid-binding, OB-fold

Homology

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GenBank top hits

e value

%identity

Alignment

KGN46888.2 hypothetical protein Csa_020864 [Cucumis sativus]

7.2e-72

87.18

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Query:  MANVQPITTMCPVIAMDHTKFCYRACSICERTLPDNPSSLCRFCNFNAFNPGSSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFNFAKLH
        M N +PITTMC V+AMD+T FCYR CSICERTLP NPSSLC+FCNFNAFNPGSSSSKR+FRLLMSIATDKKVQTVICFDR ARVLFGCSADEFF+FAKLH
Subjt:  MANVQPITTMCPVIAMDHTKFCYRACSICERTLPDNPSSLCRFCNFNAFNPGSSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFNFAKLH

Query:  PFAAETVNEILEGEMFRMTISKPKNGNAQHLRVVQVVPLSSGFQPAILRLRELYGV
        PFAAETV+EILEGEM R+TISKPKNGNAQH RVVQ+VPLSS FQPAI+RLRELYGV
Subjt:  PFAAETVNEILEGEMFRMTISKPKNGNAQHLRVVQVVPLSSGFQPAILRLRELYGV

XP_022140388.1 uncharacterized protein LOC111011075 [Momordica charantia]

8.5e-73

89.1

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Query:  MANVQPITTMCPVIAMDHTKFCYRACSICERTLPDNP-SSLCRFCNFNAFNPGSSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFNFAKL
        M N +PITTMC V+AMDH+ FCYR CSICER+LPDNP SSLC+FCNFNAFNPG SSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFF+FAKL
Subjt:  MANVQPITTMCPVIAMDHTKFCYRACSICERTLPDNP-SSLCRFCNFNAFNPGSSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFNFAKL

Query:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHLRVVQVVPLSSGFQPAILRLRELYG
        HPFAAET +EILEGEMFRMTISKPKNGNAQH RVVQVVPLSSGFQPAI+RLRELYG
Subjt:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHLRVVQVVPLSSGFQPAILRLRELYG

XP_022943427.1 uncharacterized protein LOC111448196 isoform X1 [Cucurbita moschata]

1.9e-72

86.79

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Query:  MANVQPITTMCPVIAMDHTKFCYRACSICERTLPDNPS-SLCRFCNFNAFNPGSSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFNFAKL
        M N +PITTMC VIAMDHT FCYR CSICERTLP NP  SLC+FCNFNAFNPGSSSSKR+FR+LMSIATDKKVQTVICFDR ARVLFGCSADEFF+FAKL
Subjt:  MANVQPITTMCPVIAMDHTKFCYRACSICERTLPDNPS-SLCRFCNFNAFNPGSSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFNFAKL

Query:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHLRVVQVVPLSSGFQPAILRLRELYGVRR
        HPFAAE V+EILEGEMFRMTISKPKNGNAQH RVVQ+VPLSSGFQPAILRLRELYG+ +
Subjt:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHLRVVQVVPLSSGFQPAILRLRELYGVRR

XP_022943430.1 uncharacterized protein LOC111448196 isoform X2 [Cucurbita moschata]

1.9e-72

86.79

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Query:  MANVQPITTMCPVIAMDHTKFCYRACSICERTLPDNPS-SLCRFCNFNAFNPGSSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFNFAKL
        M N +PITTMC VIAMDHT FCYR CSICERTLP NP  SLC+FCNFNAFNPGSSSSKR+FR+LMSIATDKKVQTVICFDR ARVLFGCSADEFF+FAKL
Subjt:  MANVQPITTMCPVIAMDHTKFCYRACSICERTLPDNPS-SLCRFCNFNAFNPGSSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFNFAKL

Query:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHLRVVQVVPLSSGFQPAILRLRELYGVRR
        HPFAAE V+EILEGEMFRMTISKPKNGNAQH RVVQ+VPLSSGFQPAILRLRELYG+ +
Subjt:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHLRVVQVVPLSSGFQPAILRLRELYGVRR

XP_038901726.1 uncharacterized protein LOC120088466 [Benincasa hispida]

4.2e-72

88.46

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Query:  MANVQPITTMCPVIAMDHTKFCYRACSICERTLPDNP-SSLCRFCNFNAFNPGSSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFNFAKL
        M N +PITTMC VIAMDHT FCYR CSICERTLPDNP SS+C+FCNFNAFNP  SSSKR+FRLLMSIATD+KVQTVICFDRAARVLFGCSADEFF+FAKL
Subjt:  MANVQPITTMCPVIAMDHTKFCYRACSICERTLPDNP-SSLCRFCNFNAFNPGSSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFNFAKL

Query:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHLRVVQVVPLSSGFQPAILRLRELYG
        HPFAAETV+EILEGEMFR+TISKPKNGNAQH RVVQVVPLSSGFQPAI RLRELYG
Subjt:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHLRVVQVVPLSSGFQPAILRLRELYG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KEN7 Uncharacterized protein

1.0e-71

87.1

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Query:  MANVQPITTMCPVIAMDHTKFCYRACSICERTLPDNPSSLCRFCNFNAFNPGSSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFNFAKLH
        M N +PITTMC V+AMD+T FCYR CSICERTLP NPSSLC+FCNFNAFNPGSSSSKR+FRLLMSIATDKKVQTVICFDR ARVLFGCSADEFF+FAKLH
Subjt:  MANVQPITTMCPVIAMDHTKFCYRACSICERTLPDNPSSLCRFCNFNAFNPGSSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFNFAKLH

Query:  PFAAETVNEILEGEMFRMTISKPKNGNAQHLRVVQVVPLSSGFQPAILRLRELYG
        PFAAETV+EILEGEM R+TISKPKNGNAQH RVVQ+VPLSS FQPAI+RLRELYG
Subjt:  PFAAETVNEILEGEMFRMTISKPKNGNAQHLRVVQVVPLSSGFQPAILRLRELYG

A0A6J1CHW5 uncharacterized protein LOC111011075

4.1e-73

89.1

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Query:  MANVQPITTMCPVIAMDHTKFCYRACSICERTLPDNP-SSLCRFCNFNAFNPGSSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFNFAKL
        M N +PITTMC V+AMDH+ FCYR CSICER+LPDNP SSLC+FCNFNAFNPG SSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFF+FAKL
Subjt:  MANVQPITTMCPVIAMDHTKFCYRACSICERTLPDNP-SSLCRFCNFNAFNPGSSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFNFAKL

Query:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHLRVVQVVPLSSGFQPAILRLRELYG
        HPFAAET +EILEGEMFRMTISKPKNGNAQH RVVQVVPLSSGFQPAI+RLRELYG
Subjt:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHLRVVQVVPLSSGFQPAILRLRELYG

A0A6J1FWW9 uncharacterized protein LOC111448196 isoform X1

9.2e-73

86.79

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Query:  MANVQPITTMCPVIAMDHTKFCYRACSICERTLPDNPS-SLCRFCNFNAFNPGSSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFNFAKL
        M N +PITTMC VIAMDHT FCYR CSICERTLP NP  SLC+FCNFNAFNPGSSSSKR+FR+LMSIATDKKVQTVICFDR ARVLFGCSADEFF+FAKL
Subjt:  MANVQPITTMCPVIAMDHTKFCYRACSICERTLPDNPS-SLCRFCNFNAFNPGSSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFNFAKL

Query:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHLRVVQVVPLSSGFQPAILRLRELYGVRR
        HPFAAE V+EILEGEMFRMTISKPKNGNAQH RVVQ+VPLSSGFQPAILRLRELYG+ +
Subjt:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHLRVVQVVPLSSGFQPAILRLRELYGVRR

A0A6J1FXT2 uncharacterized protein LOC111448196 isoform X2

9.2e-73

86.79

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Query:  MANVQPITTMCPVIAMDHTKFCYRACSICERTLPDNPS-SLCRFCNFNAFNPGSSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFNFAKL
        M N +PITTMC VIAMDHT FCYR CSICERTLP NP  SLC+FCNFNAFNPGSSSSKR+FR+LMSIATDKKVQTVICFDR ARVLFGCSADEFF+FAKL
Subjt:  MANVQPITTMCPVIAMDHTKFCYRACSICERTLPDNPS-SLCRFCNFNAFNPGSSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFNFAKL

Query:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHLRVVQVVPLSSGFQPAILRLRELYGVRR
        HPFAAE V+EILEGEMFRMTISKPKNGNAQH RVVQ+VPLSSGFQPAILRLRELYG+ +
Subjt:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHLRVVQVVPLSSGFQPAILRLRELYGVRR

A0A6J1J8M2 uncharacterized protein LOC111483608 isoform X3

1.0e-71

86.16

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Query:  MANVQPITTMCPVIAMDHTKFCYRACSICERTLPDNPS-SLCRFCNFNAFNPGSSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFNFAKL
        M N + ITTMC VIAMDHT FCYR CSICERTLP NP  SLC+FCNFNAFNPGSSSSKR+FR+LMSIATDKKVQTVICFDR ARVLFGCSADEFF+FAKL
Subjt:  MANVQPITTMCPVIAMDHTKFCYRACSICERTLPDNPS-SLCRFCNFNAFNPGSSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFNFAKL

Query:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHLRVVQVVPLSSGFQPAILRLRELYGVRR
        HPFAAE V+EILEGEMFRMTISKPKNGNAQH RVVQ+VPLSSGFQPAILRLRELYG+ +
Subjt:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHLRVVQVVPLSSGFQPAILRLRELYGVRR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G28105.1 CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Replication factor A, C-terminal (InterPro:IPR013955); Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

1.2e-43

57.62

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Query:  TTMCPVIAMDHTKFCYRACSICERTLP-DN----PSSLCRFCNFNAFNPGSSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFNFAKLHPF
        T +C ++A+D T +CYR CS C+R LP DN     SS C+FC        S   K L+R+LMSIATD  V+TVICFDRAA VLFGCSADEFF+F KL+P 
Subjt:  TTMCPVIAMDHTKFCYRACSICERTLP-DN----PSSLCRFCNFNAFNPGSSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFNFAKLHPF

Query:  AAETVNEILEGEMFRMTISKPKNGNAQHLRVVQVVPLSSGFQPAILRLREL
        AA  VN++ +GEM RMT+++P+N NAQH+RV  VVPL SG QPAI+ LR++
Subjt:  AAETVNEILEGEMFRMTISKPKNGNAQHLRVVQVVPLSSGFQPAILRLREL

Sequences

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CDS sequence

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ATGGCAAATGTTCAGCCAATAACAACCATGTGCCCAGTGATAGCCATGGATCACACCAAGTTCTGTTATAGGGCTTGTTCTATCTGTGAGAGGACTCTCCCTGATAACCC
CTCTTCTCTCTGCAGATTCTGCAACTTCAACGCCTTCAATCCCGGATCCTCCTCCTCCAAACGCCTCTTTCGTCTCCTTATGTCAATTGCAACGGATAAGAAAGTACAAA
CTGTTATATGCTTTGATAGGGCTGCTAGGGTTCTGTTTGGTTGCTCTGCTGATGAGTTTTTCAACTTTGCTAAGCTACATCCTTTTGCTGCTGAAACTGTAAATGAAATT
TTGGAGGGAGAGATGTTTAGAATGACGATCTCTAAACCCAAGAATGGCAATGCACAACACTTGAGAGTTGTACAAGTTGTTCCTCTGAGTTCAGGATTTCAACCAGCAAT
TCTGAGACTGAGGGAATTGTATGGGGTAAGAAGAGAAGTTGCTCTTAATTTTCCTCCCTTTGTCATTACCGCCCAGACCCTTTCCCCAGCCGCCGCTCGAGCTCGCGCCG
CCGTCGCCTCCTGTCTTCAGCCGCCGCCGCATGAAGCCGTTCGGCCAACCCTCTTCACGCGCGAGTTCTCTTTCTCTCTCGTGGGGTCTCTATCCGCGATCTCTCCCTCT
ATCCCCGTGGGTGTGATTGTGAAGCCGTCGCCGACCTTGCCGGAGAAGACCCAGCCGCCGGAAGCATCGTCGCCGGTCTCTCCCTCGCGTGGGTTCTCTTCTCGCGCCGT
CTCCTCCCTGTTCGCGCCGTTTTTCAGCAAGAAACCTCGTGGATCTCGCGCGGACAGCAACCCGAAGCACCGTCTTCTTCGCGTTTCAGCCTTAGAACCGTGGGTCGCTC
CGGGTGCGCCGCCTAAGTGTTCGATTGAGTTCGATACACTTCAACTCGAGTACCCACTGCCCAAGGACCATTCTAGCACGTTGATAGAGGTTAGAATAACCCGCCTAACG
TGGAAACGGGTCCGTTTGGGTAAGTTCCTTGCTGTCCCTTTATCTATAGCGTTGTAG

mRNA sequence

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Protein sequence

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MANVQPITTMCPVIAMDHTKFCYRACSICERTLPDNPSSLCRFCNFNAFNPGSSSSKRLFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFNFAKLHPFAAETVNEI
LEGEMFRMTISKPKNGNAQHLRVVQVVPLSSGFQPAILRLRELYGVRREVALNFPPFVITAQTLSPAAARARAAVASCLQPPPHEAVRPTLFTREFSFSLVGSLSAISPS
IPVGVIVKPSPTLPEKTQPPEASSPVSPSRGFSSRAVSSLFAPFFSKKPRGSRADSNPKHRLLRVSALEPWVAPGAPPKCSIEFDTLQLEYPLPKDHSSTLIEVRITRLT
WKRVRLGKFLAVPLSIAL

Spg026539 (gene) of Sponge gourd (cylindrica) v1 genome