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Spg026545 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026545
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold6:17890088..17892059
RNA-Seq ExpressionSpg026545
SyntenySpg026545
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]3.6e-3251.5Show/hide
Query:  MQSQPLQDLRSTCQ-------------PLSTGFSSKAGGYLVFSDVLSILG--------------------------PRGNRSSLQTGELDKT-------
        MQSQPLQ+L +T                 STGFSSK GG+LVFSD LSIL                           PRGNR SLQT ELDKT       
Subjt:  MQSQPLQDLRSTCQ-------------PLSTGFSSKAGGYLVFSDVLSILG--------------------------PRGNRSSLQTGELDKT-------

Query:  --------VEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
                V IELPVPD LPTSAESS S+SS                 F NQVMS LH V    FNVSVGSTGIVRGDDVCWLHAVFRAK  GGPGGGVT
Subjt:  --------VEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]2.9e-3455.38Show/hide
Query:  MQSQPLQDLRSTCQPLSTGFSSKAGGYLVFSDVLSILGP-----------------------RGNRSSLQTGELDKT-----------------VEIELP
        MQSQPLQ+L +T   L TGFSSK GG+LVFSD LSIL                         RGNRSSLQ+GELD T                 VEIELP
Subjt:  MQSQPLQDLRSTCQPLSTGFSSKAGGYLVFSDVLSILGP-----------------------RGNRSSLQTGELDKT-----------------VEIELP

Query:  VPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
        VPDTLPTSAESS S+SS                YF NQVMS LH V    F+V VGSTGIVRGDDVCWLHAVFRAK  GGPGGGVT
Subjt:  VPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

KAA0064296.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]7.6e-3556.42Show/hide
Query:  MQSQPLQDLRSTCQ-------------PLSTGFSSKAGGYLVFSDVLSIL-------------------GPRGNRSSLQTGELDKT--------------
        MQS PL++L +T                 STGFSSK G +LVFSD LSIL                    PRGN+ SLQTGELDKT              
Subjt:  MQSQPLQDLRSTCQ-------------PLSTGFSSKAGGYLVFSDVLSIL-------------------GPRGNRSSLQTGELDKT--------------

Query:  ---VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
           VEIEL VPDTLPTSAES  S+SSYF NQVMSGLH V    FNVSVGSTGIVRGDDVC LH VFRAK AGGPGGGVT
Subjt:  ---VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]9.0e-3656.76Show/hide
Query:  MQSQPLQDLRSTCQ-------------PLSTGFSSKAGGYLVFSDVLSI-----------LGPRGNRSSLQTGELDKTV---------------EIELPV
        MQSQPLQ+L +T                 STGFSSK GG+LV SD LSI           LGPRGNR SLQTGELDKTV                IELPV
Subjt:  MQSQPLQDLRSTCQ-------------PLSTGFSSKAGGYLVFSDVLSI-----------LGPRGNRSSLQTGELDKTV---------------EIELPV

Query:  PDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
        PDTLPTSAESS S+SS                 F NQVMS LH V    FNVSVGSTGIVRGDDVCWLHAVFRAK  GGPGGGVT
Subjt:  PDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]2.9e-3455.38Show/hide
Query:  MQSQPLQDLRSTCQPLSTGFSSKAGGYLVFSDVLSILGP-----------------------RGNRSSLQTGELDKT-----------------VEIELP
        MQSQPLQ+L +T   L TGFSSK GG+LVFSD LSIL                         RGNRSSLQ+GELD T                 VEIELP
Subjt:  MQSQPLQDLRSTCQPLSTGFSSKAGGYLVFSDVLSILGP-----------------------RGNRSSLQTGELDKT-----------------VEIELP

Query:  VPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
        VPDTLPTSAESS S+SS                YF NQVMS LH V    F+V VGSTGIVRGDDVCWLHAVFRAK  GGPGGGVT
Subjt:  VPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

TrEMBL top hitse value%identityAlignment
A0A5A7UT17 CCHC-type domain-containing protein1.7e-3251.5Show/hide
Query:  MQSQPLQDLRSTCQ-------------PLSTGFSSKAGGYLVFSDVLSILG--------------------------PRGNRSSLQTGELDKT-------
        MQSQPLQ+L +T                 STGFSSK GG+LVFSD LSIL                           PRGNR SLQT ELDKT       
Subjt:  MQSQPLQDLRSTCQ-------------PLSTGFSSKAGGYLVFSDVLSILG--------------------------PRGNRSSLQTGELDKT-------

Query:  --------VEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
                V IELPVPD LPTSAESS S+SS                 F NQVMS LH V    FNVSVGSTGIVRGDDVCWLHAVFRAK  GGPGGGVT
Subjt:  --------VEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

A0A5A7V9N3 Reverse transcriptase1.4e-3455.38Show/hide
Query:  MQSQPLQDLRSTCQPLSTGFSSKAGGYLVFSDVLSILGP-----------------------RGNRSSLQTGELDKT-----------------VEIELP
        MQSQPLQ+L +T   L TGFSSK GG+LVFSD LSIL                         RGNRSSLQ+GELD T                 VEIELP
Subjt:  MQSQPLQDLRSTCQPLSTGFSSKAGGYLVFSDVLSILGP-----------------------RGNRSSLQTGELDKT-----------------VEIELP

Query:  VPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
        VPDTLPTSAESS S+SS                YF NQVMS LH V    F+V VGSTGIVRGDDVCWLHAVFRAK  GGPGGGVT
Subjt:  VPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein3.7e-3556.42Show/hide
Query:  MQSQPLQDLRSTCQ-------------PLSTGFSSKAGGYLVFSDVLSIL-------------------GPRGNRSSLQTGELDKT--------------
        MQS PL++L +T                 STGFSSK G +LVFSD LSIL                    PRGN+ SLQTGELDKT              
Subjt:  MQSQPLQDLRSTCQ-------------PLSTGFSSKAGGYLVFSDVLSIL-------------------GPRGNRSSLQTGELDKT--------------

Query:  ---VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
           VEIEL VPDTLPTSAES  S+SSYF NQVMSGLH V    FNVSVGSTGIVRGDDVC LH VFRAK AGGPGGGVT
Subjt:  ---VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

A0A5D3CJX3 CCHC-type domain-containing protein4.4e-3656.76Show/hide
Query:  MQSQPLQDLRSTCQ-------------PLSTGFSSKAGGYLVFSDVLSI-----------LGPRGNRSSLQTGELDKTV---------------EIELPV
        MQSQPLQ+L +T                 STGFSSK GG+LV SD LSI           LGPRGNR SLQTGELDKTV                IELPV
Subjt:  MQSQPLQDLRSTCQ-------------PLSTGFSSKAGGYLVFSDVLSI-----------LGPRGNRSSLQTGELDKTV---------------EIELPV

Query:  PDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
        PDTLPTSAESS S+SS                 F NQVMS LH V    FNVSVGSTGIVRGDDVCWLHAVFRAK  GGPGGGVT
Subjt:  PDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

A0A5D3DSY7 Putative Retrotransposon protein1.4e-3455.38Show/hide
Query:  MQSQPLQDLRSTCQPLSTGFSSKAGGYLVFSDVLSILGP-----------------------RGNRSSLQTGELDKT-----------------VEIELP
        MQSQPLQ+L +T   L TGFSSK GG+LVFSD LSIL                         RGNRSSLQ+GELD T                 VEIELP
Subjt:  MQSQPLQDLRSTCQPLSTGFSSKAGGYLVFSDVLSILGP-----------------------RGNRSSLQTGELDKT-----------------VEIELP

Query:  VPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
        VPDTLPTSAESS S+SS                YF NQVMS LH V    F+V VGSTGIVRGDDVCWLHAVFRAK  GGPGGGVT
Subjt:  VPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGAGCACAGGATTTTCGAGCAAAGCAGGAGGATATTTGGTTTTCTCTGATGTTTTGAGCATTCT
GGGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGAT
CAAGCTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTC
TGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACATGA
mRNA sequenceShow/hide mRNA sequence
ATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGAGCACAGGATTTTCGAGCAAAGCAGGAGGATATTTGGTTTTCTCTGATGTTTTGAGCATTCT
GGGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGAT
CAAGCTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTC
TGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACATGA
Protein sequenceShow/hide protein sequence
MQSQPLQDLRSTCQPLSTGFSSKAGGYLVFSDVLSILGPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDV
CWLHAVFRAKLAGGPGGGVT