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Spg026549 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026549
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold6:16949478..16953502
RNA-Seq ExpressionSpg026549
SyntenySpg026549
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]7.7e-2668Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPASAESSRSSPNTWVELYIESVTFQ--------------TRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPG
        MTEILS RLYGTVCTQV+IELP+PDTLP SAESS S+ NTW+ELY ESV  +                FNVSVGSTGIVRGDDVCWLHAVFR K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPASAESSRSSPNTWVELYIESVTFQ--------------TRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPG

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]1.4e-2261.54Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPASAESSRSSPNTWVELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLP SAESS S+ +TW+ELY+E V  +  +       GIVR DDVCWLHAVFRAK AG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPASAESSRSSPNTWVELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAG

Query:  GPGG
        GPGG
Subjt:  GPGG

TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.7e-2055.65Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPASAESSRSSPNTWVELYIESVTFQTRFNVS-----------VGSTGIVRGDDVCW
        MTEILS RL GTVCTQ                 VEIELPVPDTLP SAE   S+ +TW+ELY+ESV  +  F               GS GIVRGDDVCW
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPASAESSRSSPNTWVELYIESVTFQTRFNVS-----------VGSTGIVRGDDVCW

Query:  LHAVFRAKLAGGPGG
        LHAVFRAK AGGP G
Subjt:  LHAVFRAKLAGGPGG

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]1.4e-1962.77Show/hide
Query:  IELPVPDTLPASAESSRSSPNTWVELYIESV------TFQTR--------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG--ADWWCSHKR
        IELPVPDTLP SAESS S+ +TW+ELY ESV      +F  +        FNVSVGSTGIVRGDDVCWLHAVFRAK  GGPGG    W  S +R
Subjt:  IELPVPDTLPASAESSRSSPNTWVELYIESV------TFQTR--------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG--ADWWCSHKR

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]1.4e-2261.54Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPASAESSRSSPNTWVELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLP SAESS S+ +TW+ELY+E V  +  +       GIVR DDVCWLHAVFRAK AG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPASAESSRSSPNTWVELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAG

Query:  GPGG
        GPGG
Subjt:  GPGG

TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein3.7e-2668Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPASAESSRSSPNTWVELYIESVTFQ--------------TRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPG
        MTEILS RLYGTVCTQV+IELP+PDTLP SAESS S+ NTW+ELY ESV  +                FNVSVGSTGIVRGDDVCWLHAVFR K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPASAESSRSSPNTWVELYIESVTFQ--------------TRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPG

A0A5A7VMG9 Reverse transcriptase6.6e-2361.54Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPASAESSRSSPNTWVELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLP SAESS S+ +TW+ELY+E V  +  +       GIVR DDVCWLHAVFRAK AG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPASAESSRSSPNTWVELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAG

Query:  GPGG
        GPGG
Subjt:  GPGG

A0A5D3CCC7 DNA/RNA polymerases superfamily protein1.8e-2055.65Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPASAESSRSSPNTWVELYIESVTFQTRFNVS-----------VGSTGIVRGDDVCW
        MTEILS RL GTVCTQ                 VEIELPVPDTLP SAE   S+ +TW+ELY+ESV  +  F               GS GIVRGDDVCW
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPASAESSRSSPNTWVELYIESVTFQTRFNVS-----------VGSTGIVRGDDVCW

Query:  LHAVFRAKLAGGPGG
        LHAVFRAK AGGP G
Subjt:  LHAVFRAKLAGGPGG

A0A5D3CJX3 CCHC-type domain-containing protein6.8e-2062.77Show/hide
Query:  IELPVPDTLPASAESSRSSPNTWVELYIESV------TFQTR--------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG--ADWWCSHKR
        IELPVPDTLP SAESS S+ +TW+ELY ESV      +F  +        FNVSVGSTGIVRGDDVCWLHAVFRAK  GGPGG    W  S +R
Subjt:  IELPVPDTLPASAESSRSSPNTWVELYIESV------TFQTR--------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG--ADWWCSHKR

A0A5D3DX39 Reverse transcriptase6.6e-2361.54Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPASAESSRSSPNTWVELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLP SAESS S+ +TW+ELY+E V  +  +       GIVR DDVCWLHAVFRAK AG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPASAESSRSSPNTWVELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAG

Query:  GPGG
        GPGG
Subjt:  GPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAGCGTCTGCTGAAAGCTCCAGATCAAG
CCCCAATACGTGGGTGGAGTTGTATATTGAGTCCGTTACTTTCCAAACCAGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTC
ACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGCCGATTGGTGGTGTTCGCACAAGAGGGTTGCTGCGTTTTCAATCTTATTGGCAAGAAAAGGAGAATTG
ATCAAGGCTTTCTACAAAAAACAGTCGCTGGAATTTCCGGATTTTGCCTCTAGATGCAACAGCGTCGCGACGCTATCGCAATTTCGCAAAACGCAGTTCTCGCTGGGTAA
GGTGAAAGTTGACCGGTTCTTGACTAGTTCGAAGAGATTTGACCCGATTCATGCATTATTTGCACGGTTCAAGCATTTTTTGGCATTTTGGGGTCCGATTCGAAGCAGTT
CGGGTCGGTTCGTGCGGTCTAGTCCGGTTCTGAAGTTGCAGAAGGATGTTTTAGGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAGCGTCTGCTGAAAGCTCCAGATCAAG
CCCCAATACGTGGGTGGAGTTGTATATTGAGTCCGTTACTTTCCAAACCAGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTC
ACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGCCGATTGGTGGTGTTCGCACAAGAGGGTTGCTGCGTTTTCAATCTTATTGGCAAGAAAAGGAGAATTG
ATCAAGGCTTTCTACAAAAAACAGTCGCTGGAATTTCCGGATTTTGCCTCTAGATGCAACAGCGTCGCGACGCTATCGCAATTTCGCAAAACGCAGTTCTCGCTGGGTAA
GGTGAAAGTTGACCGGTTCTTGACTAGTTCGAAGAGATTTGACCCGATTCATGCATTATTTGCACGGTTCAAGCATTTTTTGGCATTTTGGGGTCCGATTCGAAGCAGTT
CGGGTCGGTTCGTGCGGTCTAGTCCGGTTCTGAAGTTGCAGAAGGATGTTTTAGGGTAA
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELPVPDTLPASAESSRSSPNTWVELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGADWWCSHKRVAAFSILLARKGEL
IKAFYKKQSLEFPDFASRCNSVATLSQFRKTQFSLGKVKVDRFLTSSKRFDPIHALFARFKHFLAFWGPIRSSSGRFVRSSPVLKLQKDVLG