; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg026575 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026575
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description60S ribosomal protein L11
Genome locationscaffold6:17834557..17840034
RNA-Seq ExpressionSpg026575
SyntenySpg026575
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR002132 - Ribosomal protein L5
IPR022803 - Ribosomal protein L5 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ACG31637.1 60S ribosomal protein L11-1 [Zea mays]7.9e-0862.5Show/hide
Query:  VETTQARVRALQRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVANT
        +E    RV   +RCKSR+GIQH+VTKEDAMKWFQVKYEG ++++  NT
Subjt:  VETTQARVRALQRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVANT

KAF3961778.1 hypothetical protein CMV_013637 [Castanea mollissima]1.0e-0767.35Show/hide
Query:  RVRALQRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVAN-TVVVELG
        RV   +RCKSR+GIQH+VTKEDAMKWFQVKYEG ++++  N TV+ ELG
Subjt:  RVRALQRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVAN-TVVVELG

KJB57390.1 hypothetical protein B456_009G161300 [Gossypium raimondii]2.3e-0739Show/hide
Query:  VRANTKLLSQFLPFQGNSAMKPTLHLVLKLLDSTIESFLMSLDRKYSDVLSCFVETTQARVRALQRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVAN
        +R N K ++ ++  +G  AM        +LL+S ++     L R+      CF    Q  +    +CKSR+GIQH+VTKEDAMKWFQVKYEG ++++  N
Subjt:  VRANTKLLSQFLPFQGNSAMKPTLHLVLKLLDSTIESFLMSLDRKYSDVLSCFVETTQARVRALQRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVAN

NP_001132427.1 60S ribosomal protein L11-1 [Zea mays]7.9e-0862.5Show/hide
Query:  VETTQARVRALQRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVANT
        +E    RV   +RCKSR+GIQH+VTKEDAMKWFQVKYEG ++++  NT
Subjt:  VETTQARVRALQRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVANT

PKI44010.1 hypothetical protein CRG98_035595 [Punica granatum]6.1e-0839.6Show/hide
Query:  VRANTKLLSQFLPFQGNSAMKPTLHLVLKLLDSTIESFLMSLDRKYSDVLSCFVETTQARVRALQRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVAN
        +R N K ++ ++  +G  AM        +LL+S ++     L R+      CF    Q  +    +CKSR+GIQH+VTKEDAMKWFQVKYEG ++++  N
Subjt:  VRANTKLLSQFLPFQGNSAMKPTLHLVLKLLDSTIESFLMSLDRKYSDVLSCFVETTQARVRALQRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVAN

Query:  T
        T
Subjt:  T

TrEMBL top hitse value%identityAlignment
A0A0E0HAZ7 Uncharacterized protein8.5e-0840.2Show/hide
Query:  VRANTKLLSQFLPFQGNSAMKPTLHLVLKLLDSTIESFLMSLDRKYSDVLSCFVETTQARVRALQRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEV-A
        +R N K ++ ++  +G  AM        +LL+S ++     L R+      CF    Q  +    +CKSR+GIQH+VTKEDAMKWFQVKYEG ++++  A
Subjt:  VRANTKLLSQFLPFQGNSAMKPTLHLVLKLLDSTIESFLMSLDRKYSDVLSCFVETTQARVRALQRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEV-A

Query:  NT
        NT
Subjt:  NT

A0A2I0IJY7 Uncharacterized protein2.9e-0839.6Show/hide
Query:  VRANTKLLSQFLPFQGNSAMKPTLHLVLKLLDSTIESFLMSLDRKYSDVLSCFVETTQARVRALQRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVAN
        +R N K ++ ++  +G  AM        +LL+S ++     L R+      CF    Q  +    +CKSR+GIQH+VTKEDAMKWFQVKYEG ++++  N
Subjt:  VRANTKLLSQFLPFQGNSAMKPTLHLVLKLLDSTIESFLMSLDRKYSDVLSCFVETTQARVRALQRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVAN

Query:  T
        T
Subjt:  T

A0A3L6DTL4 60S ribosomal protein L113.8e-0862.5Show/hide
Query:  VETTQARVRALQRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVANT
        +E    RV   +RCKSR+GIQH+VTKEDAMKWFQVKYEG ++++  NT
Subjt:  VETTQARVRALQRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVANT

B4FGL9 60S ribosomal protein L11-13.8e-0862.5Show/hide
Query:  VETTQARVRALQRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVANT
        +E    RV   +RCKSR+GIQH+VTKEDAMKWFQVKYEG ++++  NT
Subjt:  VETTQARVRALQRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVANT

B6T3F4 60S ribosomal protein L11-13.8e-0862.5Show/hide
Query:  VETTQARVRALQRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVANT
        +E    RV   +RCKSR+GIQH+VTKEDAMKWFQVKYEG ++++  NT
Subjt:  VETTQARVRALQRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVANT

SwissProt top hitse value%identityAlignment
A2YDY2 60S ribosomal protein L116.7e-1063.27Show/hide
Query:  VETTQARVRALQRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEV-ANT
        +E    RV   +RCKSR+GIQH+VTKEDAMKWFQVKYEG ++++  ANT
Subjt:  VETTQARVRALQRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEV-ANT

P42794 60S ribosomal protein L11-25.7e-0963.41Show/hide
Query:  RVRALQRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVAN
        RV   +RCK+R+GIQH+VTK+DAMKWFQVKYEG ++++  N
Subjt:  RVRALQRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVAN

P42795 60S ribosomal protein L11-15.7e-0963.41Show/hide
Query:  RVRALQRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVAN
        RV   +RCK+R+GIQH+VTK+DAMKWFQVKYEG ++++  N
Subjt:  RVRALQRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVAN

P46287 60S ribosomal protein L111.7e-0865.79Show/hide
Query:  RVRALQRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDE
        RV   +RCK+R+GIQH+VTK+DAMKWFQVKYEG ++++
Subjt:  RVRALQRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDE

Q0DK10 60S ribosomal protein L116.7e-1063.27Show/hide
Query:  VETTQARVRALQRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEV-ANT
        +E    RV   +RCKSR+GIQH+VTKEDAMKWFQVKYEG ++++  ANT
Subjt:  VETTQARVRALQRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEV-ANT

Arabidopsis top hitse value%identityAlignment
AT2G42740.1 ribosomal protein large subunit 16A4.0e-1063.41Show/hide
Query:  RVRALQRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVAN
        RV   +RCK+R+GIQH+VTK+DAMKWFQVKYEG ++++  N
Subjt:  RVRALQRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVAN

AT3G58700.1 Ribosomal L5P family protein4.0e-1063.41Show/hide
Query:  RVRALQRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVAN
        RV   +RCK+R+GIQH+VTK+DAMKWFQVKYEG ++++  N
Subjt:  RVRALQRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVAN

AT4G18730.1 ribosomal protein L16B4.0e-1063.41Show/hide
Query:  RVRALQRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVAN
        RV   +RCK+R+GIQH+VTK+DAMKWFQVKYEG ++++  N
Subjt:  RVRALQRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVAN

AT5G45775.1 Ribosomal L5P family protein4.0e-1063.41Show/hide
Query:  RVRALQRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVAN
        RV   +RCK+R+GIQH+VTK+DAMKWFQVKYEG ++++  N
Subjt:  RVRALQRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVAN

AT5G45775.2 Ribosomal L5P family protein4.0e-1063.41Show/hide
Query:  RVRALQRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVAN
        RV   +RCK+R+GIQH+VTK+DAMKWFQVKYEG ++++  N
Subjt:  RVRALQRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVAN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGTTTCTCTATACGATCTTGACGTGGACGACCACCGAGATCTTCCCCGCTATTCTCCGGCCTTAGAACGGGCTTGTGGGAACCCGAGCATGATGAATTGGAAGAA
GAAAGAATATGGTCCCGATCTTCTTCTGACAGCAAGCTCAACAGCAGCATGTAGAAGTCATTTATGTGTCGCTCGGCTCGTGGGTCACCTTGGATTTGTGTGGGTCAGAG
CGAACACCAAGCTTTTATCCCAATTTCTACCATTTCAAGGGAACTCGGCTATGAAGCCAACTCTGCACTTAGTGCTCAAGCTTCTAGACAGTACTATTGAGTCATTTTTA
ATGTCATTGGATAGGAAGTACAGTGATGTCCTGAGCTGTTTTGTTGAGACTACTCAGGCTAGAGTTCGTGCTCTTCAGAGGTGCAAGTCTCGCATCGGGATCCAGCACAA
AGTCACAAAGGAGGATGCCATGAAGTGGTTCCAGGTGAAATATGAAGGTACTTTAGTGGATGAAGTGGCTAATACTGTAGTAGTGGAGCTTGGTGAAACTCAACTTGTTG
TATACTTCTCCATATGTTGCAGGTTTGTTCCCGATACTTCATTGATTCTCATCTTCACATCGAAACCTAATATATGTTGGACAACAGAATCTGCTAATGGAAAATCTTGT
TAA
mRNA sequenceShow/hide mRNA sequence
ATGGATGTTTCTCTATACGATCTTGACGTGGACGACCACCGAGATCTTCCCCGCTATTCTCCGGCCTTAGAACGGGCTTGTGGGAACCCGAGCATGATGAATTGGAAGAA
GAAAGAATATGGTCCCGATCTTCTTCTGACAGCAAGCTCAACAGCAGCATGTAGAAGTCATTTATGTGTCGCTCGGCTCGTGGGTCACCTTGGATTTGTGTGGGTCAGAG
CGAACACCAAGCTTTTATCCCAATTTCTACCATTTCAAGGGAACTCGGCTATGAAGCCAACTCTGCACTTAGTGCTCAAGCTTCTAGACAGTACTATTGAGTCATTTTTA
ATGTCATTGGATAGGAAGTACAGTGATGTCCTGAGCTGTTTTGTTGAGACTACTCAGGCTAGAGTTCGTGCTCTTCAGAGGTGCAAGTCTCGCATCGGGATCCAGCACAA
AGTCACAAAGGAGGATGCCATGAAGTGGTTCCAGGTGAAATATGAAGGTACTTTAGTGGATGAAGTGGCTAATACTGTAGTAGTGGAGCTTGGTGAAACTCAACTTGTTG
TATACTTCTCCATATGTTGCAGGTTTGTTCCCGATACTTCATTGATTCTCATCTTCACATCGAAACCTAATATATGTTGGACAACAGAATCTGCTAATGGAAAATCTTGT
TAA
Protein sequenceShow/hide protein sequence
MDVSLYDLDVDDHRDLPRYSPALERACGNPSMMNWKKKEYGPDLLLTASSTAACRSHLCVARLVGHLGFVWVRANTKLLSQFLPFQGNSAMKPTLHLVLKLLDSTIESFL
MSLDRKYSDVLSCFVETTQARVRALQRCKSRIGIQHKVTKEDAMKWFQVKYEGTLVDEVANTVVVELGETQLVVYFSICCRFVPDTSLILIFTSKPNICWTTESANGKSC