; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg026576 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026576
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold6:16918111..16932423
RNA-Seq ExpressionSpg026576
SyntenySpg026576
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.0e-2561.6Show/hide
Query:  RPRGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSRSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGI
        RPRG+R+SLQTGELDKT                 VEIELPVPDTLPTSAESS S SS                YF NQVMSGLH V    FNVSVGST I
Subjt:  RPRGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSRSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGI

Query:  VRGDDVCWLHAVFRAKLAGGPGGAV
        VRGD+VCWLHAVF AK AGGPGG V
Subjt:  VRGDDVCWLHAVFRAKLAGGPGGAV

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]5.9e-2549.37Show/hide
Query:  KAHAKPAIAGSEINLSTSGFLFSLSYTEGIKREPRICVVCVRGNSGQIGWESHFHFFRPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRSRSSYFP
        K +AKPAIA S  N      LF LSY E ++ E    +      SG     S      PRG+R +L TG+LDKTVEIELPVPDTLPTSAESS+S SS + 
Subjt:  KAHAKPAIAGSEINLSTSGFLFSLSYTEGIKREPRICVVCVRGNSGQIGWESHFHFFRPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRSRSSYFP

Query:  NQVMSGLH---------HVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGAV
              +H          V V  +    GS GIVRGDD+CWLHAVF AK AG PGG V
Subjt:  NQVMSGLH---------HVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGAV

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]1.0e-2450.61Show/hide
Query:  FLFSLSYTEGIKREPRICVVCVRGNSGQIGWESHFHFFRPRGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSRSS-----
        F  +LS  E  K   ++ +    G SG+  W+        RG+RSSLQ+GELD T                 VEIELPVPDTLPTSAESS S SS     
Subjt:  FLFSLSYTEGIKREPRICVVCVRGNSGQIGWESHFHFFRPRGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSRSS-----

Query:  -----------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGAVT
                   YF NQVMS LH V    F+V VGSTGIVRGDDVCWLHAVFRAK  GGPGG VT
Subjt:  -----------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGAVT

KAA0064296.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.8e-2767.57Show/hide
Query:  RPRGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSRSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAK
        +PRG++ SLQTGELDKT                 VEIEL VPDTLPTSAES  S SSYF NQVMSGLH V    FNVSVGSTGIVRGDDVC LH VFRAK
Subjt:  RPRGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSRSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAK

Query:  LAGGPGGAVTL
         AGGPGG VT+
Subjt:  LAGGPGGAVTL

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]5.4e-2652.1Show/hide
Query:  LFSLSYTEGIK------REPRICVVCVRGNSGQIGWESHFHFFRPRGSRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSRSS--
        LFSLSY EG K      +     V+    +  +I   +   +  PRG+R SLQTGELDKTV                IELPVPDTLPTSAESS S SS  
Subjt:  LFSLSYTEGIK------REPRICVVCVRGNSGQIGWESHFHFFRPRGSRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSRSS--

Query:  --------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGAVT
                       F NQVMS LH V    FNVSVGSTGIVRGDDVCWLHAVFRAK  GGPGG VT
Subjt:  --------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGAVT

TrEMBL top hitse value%identityAlignment
A0A5A7U9X4 DNA/RNA polymerases superfamily protein9.9e-2661.6Show/hide
Query:  RPRGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSRSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGI
        RPRG+R+SLQTGELDKT                 VEIELPVPDTLPTSAESS S SS                YF NQVMSGLH V    FNVSVGST I
Subjt:  RPRGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSRSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGI

Query:  VRGDDVCWLHAVFRAKLAGGPGGAV
        VRGD+VCWLHAVF AK AGGPGG V
Subjt:  VRGDDVCWLHAVFRAKLAGGPGGAV

A0A5A7UAH6 CCHC-type domain-containing protein2.9e-2549.37Show/hide
Query:  KAHAKPAIAGSEINLSTSGFLFSLSYTEGIKREPRICVVCVRGNSGQIGWESHFHFFRPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRSRSSYFP
        K +AKPAIA S  N      LF LSY E ++ E    +      SG     S      PRG+R +L TG+LDKTVEIELPVPDTLPTSAESS+S SS + 
Subjt:  KAHAKPAIAGSEINLSTSGFLFSLSYTEGIKREPRICVVCVRGNSGQIGWESHFHFFRPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRSRSSYFP

Query:  NQVMSGLH---------HVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGAV
              +H          V V  +    GS GIVRGDD+CWLHAVF AK AG PGG V
Subjt:  NQVMSGLH---------HVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGAV

A0A5A7V9N3 Reverse transcriptase4.9e-2550.61Show/hide
Query:  FLFSLSYTEGIKREPRICVVCVRGNSGQIGWESHFHFFRPRGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSRSS-----
        F  +LS  E  K   ++ +    G SG+  W+        RG+RSSLQ+GELD T                 VEIELPVPDTLPTSAESS S SS     
Subjt:  FLFSLSYTEGIKREPRICVVCVRGNSGQIGWESHFHFFRPRGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSRSS-----

Query:  -----------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGAVT
                   YF NQVMS LH V    F+V VGSTGIVRGDDVCWLHAVFRAK  GGPGG VT
Subjt:  -----------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGAVT

A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein1.4e-2767.57Show/hide
Query:  RPRGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSRSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAK
        +PRG++ SLQTGELDKT                 VEIEL VPDTLPTSAES  S SSYF NQVMSGLH V    FNVSVGSTGIVRGDDVC LH VFRAK
Subjt:  RPRGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSRSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAK

Query:  LAGGPGGAVTL
         AGGPGG VT+
Subjt:  LAGGPGGAVTL

A0A5D3CJX3 CCHC-type domain-containing protein2.6e-2652.1Show/hide
Query:  LFSLSYTEGIK------REPRICVVCVRGNSGQIGWESHFHFFRPRGSRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSRSS--
        LFSLSY EG K      +     V+    +  +I   +   +  PRG+R SLQTGELDKTV                IELPVPDTLPTSAESS S SS  
Subjt:  LFSLSYTEGIK------REPRICVVCVRGNSGQIGWESHFHFFRPRGSRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSRSS--

Query:  --------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGAVT
                       F NQVMS LH V    FNVSVGSTGIVRGDDVCWLHAVFRAK  GGPGG VT
Subjt:  --------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGAVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCATTAGGTCCCACCGATGACTCAAATAAGGATGACCTAGACAACTCAGTCTCAATCCTGAGTGGATTATGGACTCCTGTTCACGAGGAGTTGTCCTTTGATTTGTATGG
TGAGAAGAGTGCAGCTGAGGGTCCATTAGGTCCCACTGCCGATTGGTGGTGTTCGCACAAGAGGGTTGCTGCGTTTTCATTCTTATTGGCAAGAAAAGGCGAATTGATTA
AGGCTTTCTACAAAAAATCTAAGACTCTGAGTAGGTTCGGTAATACTTTCCGCTGCGTGGGGCTTTTATCCCTTCAGTCCATTGGTGAATCCTCGTGGTGGTGTTCGTGT
GGGATTTGCAGCGAAAACAAGAGTTACTTGCTGCTGGAATTTTCTGCTATCCAAAGGGAATTAGGCGAATCGATCAAGAACTTCATCCACGGTAGGGAACCTCGAATCTG
TGTTGTCTGTGTTCGGGGCAATTCTGGGCAAATCGGTTGGGAATCTCATTTTCATTTCTTCAGGCCAAGAGGAAGTAGGTCGAGTCTACAAACTGGGGAACTAGATAAGA
CAGTAGAGATCGAGCTCCCGGTGCCTCATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGAGTCATGCCAC
CACGTACCAGAAGACGACGCAGGCAGAATCAGGACGGGACGTAGGATCCTACCCAAAGTCAATCTGAAAGGGGATCCAGTACCCCGAGAGGGAAAAGCTCATGCAAAGCC
AGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGGTTTTTTATTCAGTTTGAGCTACACAGAAGGAATCAAGAGGGAACCTCGAATCTGTGTTGTCTGTGTTCGGG
GCAATTCTGGGCAAATCGGTTGGGAATCTCATTTTCATTTCTTCAGGCCAAGAGGAAGTAGGTCGAGTCTACAAACTGGGGAACTAGATAAGACAGTAGAGATCGAGCTC
CCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGGTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAA
CGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGCTGTGACATTAACAA
TTCTACAATTAATCAAATAA
mRNA sequenceShow/hide mRNA sequence
CCATTAGGTCCCACCGATGACTCAAATAAGGATGACCTAGACAACTCAGTCTCAATCCTGAGTGGATTATGGACTCCTGTTCACGAGGAGTTGTCCTTTGATTTGTATGG
TGAGAAGAGTGCAGCTGAGGGTCCATTAGGTCCCACTGCCGATTGGTGGTGTTCGCACAAGAGGGTTGCTGCGTTTTCATTCTTATTGGCAAGAAAAGGCGAATTGATTA
AGGCTTTCTACAAAAAATCTAAGACTCTGAGTAGGTTCGGTAATACTTTCCGCTGCGTGGGGCTTTTATCCCTTCAGTCCATTGGTGAATCCTCGTGGTGGTGTTCGTGT
GGGATTTGCAGCGAAAACAAGAGTTACTTGCTGCTGGAATTTTCTGCTATCCAAAGGGAATTAGGCGAATCGATCAAGAACTTCATCCACGGTAGGGAACCTCGAATCTG
TGTTGTCTGTGTTCGGGGCAATTCTGGGCAAATCGGTTGGGAATCTCATTTTCATTTCTTCAGGCCAAGAGGAAGTAGGTCGAGTCTACAAACTGGGGAACTAGATAAGA
CAGTAGAGATCGAGCTCCCGGTGCCTCATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGAGTCATGCCAC
CACGTACCAGAAGACGACGCAGGCAGAATCAGGACGGGACGTAGGATCCTACCCAAAGTCAATCTGAAAGGGGATCCAGTACCCCGAGAGGGAAAAGCTCATGCAAAGCC
AGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGGTTTTTTATTCAGTTTGAGCTACACAGAAGGAATCAAGAGGGAACCTCGAATCTGTGTTGTCTGTGTTCGGG
GCAATTCTGGGCAAATCGGTTGGGAATCTCATTTTCATTTCTTCAGGCCAAGAGGAAGTAGGTCGAGTCTACAAACTGGGGAACTAGATAAGACAGTAGAGATCGAGCTC
CCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGGTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAA
CGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGCTGTGACATTAACAA
TTCTACAATTAATCAAATAA
Protein sequenceShow/hide protein sequence
PLGPTDDSNKDDLDNSVSILSGLWTPVHEELSFDLYGEKSAAEGPLGPTADWWCSHKRVAAFSFLLARKGELIKAFYKKSKTLSRFGNTFRCVGLLSLQSIGESSWWCSC
GICSENKSYLLLEFSAIQRELGESIKNFIHGREPRICVVCVRGNSGQIGWESHFHFFRPRGSRSSLQTGELDKTVEIELPVPHTLPTSAESSRSSSSTWLELYIESESCH
HVPEDDAGRIRTGRRILPKVNLKGDPVPREGKAHAKPAIAGSEINLSTSGFLFSLSYTEGIKREPRICVVCVRGNSGQIGWESHFHFFRPRGSRSSLQTGELDKTVEIEL
PVPDTLPTSAESSRSRSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGAVTLTILQLIK