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Spg026586 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026586
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold6:17107695..17109858
RNA-Seq ExpressionSpg026586
SyntenySpg026586
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-1964.04Show/hide
Query:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI---VNVLFNVQEGQRVSL------EEDDVRWLHATFRAKLAGGPGGGVTTWYQS
        VEIELPVPD LPTSAESSR++SSTW+ELY ESVH+     V+   +  Q   L        DDV WLHA FRAK AGGPGGGVTTWYQS
Subjt:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI---VNVLFNVQEGQRVSL------EEDDVRWLHATFRAKLAGGPGGGVTTWYQS

KAA0053207.1 hypothetical protein E6C27_scaffold1192G00340 [Cucumis melo var. makuwa]1.6e-2047.97Show/hide
Query:  VYKLNQKLYLVSCRVFENEEFNVYFINLGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAES
        +YKLNQKLYLVSC VFENEEF VYFIN G VLRKLWVLEVR                                          VEIELP P+ LPTSAES
Subjt:  VYKLNQKLYLVSCRVFENEEFNVYFINLGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAES

Query:  SRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEE
        SR++SSTW+ELY E VH+             +++LF V +GQ+ SLEE
Subjt:  SRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEE

KAA0053276.1 uncharacterized protein E6C27_scaffold102G00750 [Cucumis melo var. makuwa]3.2e-2141.88Show/hide
Query:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCK------ASHCRIWVQTHSGVY---KLNQKLYLVSCRVFENEEFNV
        TKPTTD  IFQ NFI FLHHF  KLSE+F+ERVK EEEEEFRGLRLKK+ K           +   +W       Y    +  +    S +  + ++  +
Subjt:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCK------ASHCRIWVQTHSGVY---KLNQKLYLVSCRVFENEEFNV

Query:  YFINLGSVLRKLWVLEV--------RVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEE
        + ++  SVLR    + +        +VEIELP+PDTLPT AES  ++SSTW+ELY ESVH+             ++++FN+  G   SLEE
Subjt:  YFINLGSVLRKLWVLEV--------RVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEE

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]3.1e-3239.71Show/hide
Query:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTHSG----------------VYKLNQKLY---------------
        +FQPNFISFLHHFP KLSEHFEERVK EEEEEFRGLRLKKIGKSSCKA+HCRIW    S                 V K NQKLY               
Subjt:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTHSG----------------VYKLNQKLY---------------

Query:  ------------------------LVSCRVF------------------ENE--------------------EFNVYFINLGSVLRKLWVLEVRVEIELP
                                ++S R++                  +N+                     + V  +N+G   R L  ++  +EIEL 
Subjt:  ------------------------LVSCRVF------------------ENE--------------------EFNVYFINLGSVLRKLWVLEVRVEIELP

Query:  VPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLE--------EDDVRWLHATFRAKLAGGPGGGVT
        VPDTLPTSAESS ++SSTW+E   E  +  +   +V+   R+  E        E+DV WLHA FRAK+AGG GGGVT
Subjt:  VPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLE--------EDDVRWLHATFRAKLAGGPGGGVT

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]2.9e-2247.52Show/hide
Query:  VYKLNQKLYL------VSCRVFENEEFNVYFINLGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLF
        ++KLNQKLYL      +S +  E ++  ++ ++  SVLR     +    IELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F
Subjt:  VYKLNQKLYL------VSCRVFENEEFNVYFINLGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLF

Query:  NVQEGQRVSLEEDDVRWLHATFRAKLAGGPGGGVTTWYQSS
        NV  G    +  DDV WLHA FRAK  GGPGGGVTTW  S+
Subjt:  NVQEGQRVSLEEDDVRWLHATFRAKLAGGPGGGVTTWYQSS

TrEMBL top hitse value%identityAlignment
A0A5A7UFD2 Uncharacterized protein7.7e-2147.97Show/hide
Query:  VYKLNQKLYLVSCRVFENEEFNVYFINLGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAES
        +YKLNQKLYLVSC VFENEEF VYFIN G VLRKLWVLEVR                                          VEIELP P+ LPTSAES
Subjt:  VYKLNQKLYLVSCRVFENEEFNVYFINLGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAES

Query:  SRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEE
        SR++SSTW+ELY E VH+             +++LF V +GQ+ SLEE
Subjt:  SRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEE

A0A5A7UGD0 Uncharacterized protein1.6e-2141.88Show/hide
Query:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCK------ASHCRIWVQTHSGVY---KLNQKLYLVSCRVFENEEFNV
        TKPTTD  IFQ NFI FLHHF  KLSE+F+ERVK EEEEEFRGLRLKK+ K           +   +W       Y    +  +    S +  + ++  +
Subjt:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCK------ASHCRIWVQTHSGVY---KLNQKLYLVSCRVFENEEFNV

Query:  YFINLGSVLRKLWVLEV--------RVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEE
        + ++  SVLR    + +        +VEIELP+PDTLPT AES  ++SSTW+ELY ESVH+             ++++FN+  G   SLEE
Subjt:  YFINLGSVLRKLWVLEV--------RVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEE

A0A5A7UT17 CCHC-type domain-containing protein6.5e-2042.95Show/hide
Query:  VYKLNQKLYLV---------------------SCRVFENEEFNVYFINLGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI---
        ++K NQKLYLV                     S +  E ++  ++ ++  SVLR     +  V IELPVPD LPTSAESS ++SSTW+ELY ESVH+   
Subjt:  VYKLNQKLYLV---------------------SCRVFENEEFNVYFINLGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI---

Query:  ----------VNVLFNVQEGQRVSLEEDDVRWLHATFRAKLAGGPGGGVTTWYQSS
                  ++++FNV  G    +  DDV WLHA FRAK  GGPGGGVTTW  S+
Subjt:  ----------VNVLFNVQEGQRVSLEEDDVRWLHATFRAKLAGGPGGGVTTWYQSS

A0A5D3CAC6 Uncharacterized protein1.5e-3239.71Show/hide
Query:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTHSG----------------VYKLNQKLY---------------
        +FQPNFISFLHHFP KLSEHFEERVK EEEEEFRGLRLKKIGKSSCKA+HCRIW    S                 V K NQKLY               
Subjt:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTHSG----------------VYKLNQKLY---------------

Query:  ------------------------LVSCRVF------------------ENE--------------------EFNVYFINLGSVLRKLWVLEVRVEIELP
                                ++S R++                  +N+                     + V  +N+G   R L  ++  +EIEL 
Subjt:  ------------------------LVSCRVF------------------ENE--------------------EFNVYFINLGSVLRKLWVLEVRVEIELP

Query:  VPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLE--------EDDVRWLHATFRAKLAGGPGGGVT
        VPDTLPTSAESS ++SSTW+E   E  +  +   +V+   R+  E        E+DV WLHA FRAK+AGG GGGVT
Subjt:  VPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLE--------EDDVRWLHATFRAKLAGGPGGGVT

A0A5D3CJX3 CCHC-type domain-containing protein1.4e-2247.52Show/hide
Query:  VYKLNQKLYL------VSCRVFENEEFNVYFINLGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLF
        ++KLNQKLYL      +S +  E ++  ++ ++  SVLR     +    IELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F
Subjt:  VYKLNQKLYL------VSCRVFENEEFNVYFINLGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLF

Query:  NVQEGQRVSLEEDDVRWLHATFRAKLAGGPGGGVTTWYQSS
        NV  G    +  DDV WLHA FRAK  GGPGGGVTTW  S+
Subjt:  NVQEGQRVSLEEDDVRWLHATFRAKLAGGPGGGVTTWYQSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTCATTTCTCCATCATTTTCCATTCAAACTTTCAGAGCACTTTGAGGAGAGAGTGAA
GGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTCATTCTGGGGTGTACA
AGTTGAATCAGAAGCTCTATTTGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTAATGTGTATTTCATTAATTTAGGTTCAGTATTGAGGAAGTTATGGGTATTGGAA
GTTAGGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCGACGTCTGCTGAAAGTTCCAGAACAAGTTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATAT
TGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCACCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAG
GGGGTGTGACAACTTGGTATCAGAGCAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGACAGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTCATTTCTCCATCATTTTCCATTCAAACTTTCAGAGCACTTTGAGGAGAGAGTGAA
GGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTCATTCTGGGGTGTACA
AGTTGAATCAGAAGCTCTATTTGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTAATGTGTATTTCATTAATTTAGGTTCAGTATTGAGGAAGTTATGGGTATTGGAA
GTTAGGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCGACGTCTGCTGAAAGTTCCAGAACAAGTTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATAT
TGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCACCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAG
GGGGTGTGACAACTTGGTATCAGAGCAGTTAG
Protein sequenceShow/hide protein sequence
MDSTKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTHSGVYKLNQKLYLVSCRVFENEEFNVYFINLGSVLRKLWVLE
VRVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHATFRAKLAGGPGGGVTTWYQSS