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Spg026589 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026589
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionnucleolar protein 58-like
Genome locationscaffold6:18052488..18055644
RNA-Seq ExpressionSpg026589
SyntenySpg026589
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_016721754.1 nucleolar protein 58-like [Gossypium hirsutum]3.8e-0432.84Show/hide
Query:  RRVDVGKIIADEISGCWKKKVGKLFFPNTITMLCKRAGVPENEGDVILFDKGIIDTPNLARLQRTQE
        R++DVG I+  EIS C  +++G L FP+ + +LC++ G+   +G+ +L +K  I+   + R+ R ++
Subjt:  RRVDVGKIIADEISGCWKKKVGKLFFPNTITMLCKRAGVPENEGDVILFDKGIIDTPNLARLQRTQE

XP_024964302.1 uncharacterized protein LOC112504584 [Cynara cardunculus var. scolymus]5.0e-0436.23Show/hide
Query:  RPMTRRVDVGKIIADEISGCWKKKVGKLFFPNTITMLCKRAGVPENEGDVILFDKGIIDTPNLARLQRT
        +P  + VDVG +I+D I GC +K  G+L+FP  I  L K+A VP   G+    +   I+   + R+++T
Subjt:  RPMTRRVDVGKIIADEISGCWKKKVGKLFFPNTITMLCKRAGVPENEGDVILFDKGIIDTPNLARLQRT

XP_024965114.1 MICAL-like protein 1, partial [Cynara cardunculus var. scolymus]1.2e-0527.75Show/hide
Query:  RADRGKSVAEALEEPDEIEESQLSYDRFVNNLARAKYAELLKRDFLFEGGFSGDLPHFLRTGIADKGCFQRPMTRRVDVGKIIADEISGCWKKKVGKLFF
        RA R  S   ++  P       + +D F + +AR ++ ++  +  L + GF        R  + D+  F R     ++VG ++   I  C K++ GKLFF
Subjt:  RADRGKSVAEALEEPDEIEESQLSYDRFVNNLARAKYAELLKRDFLFEGGFSGDLPHFLRTGIADKGCFQRPMTRRVDVGKIIADEISGCWKKKVGKLFF

Query:  PNTITMLCKRAGVPENEGDVIL---FDKGIIDTPNLARL-QRTQEARQGGLVYDINMILEQLA-LSASRQELM
        P  I  L  +AGVPE   D+++    +K  ID   ++RL +R++  R G    D+N  ++++  L+ S  +L+
Subjt:  PNTITMLCKRAGVPENEGDVIL---FDKGIIDTPNLARL-QRTQEARQGGLVYDINMILEQLA-LSASRQELM

XP_024971944.1 uncharacterized protein LOC112510826 [Cynara cardunculus var. scolymus]8.5e-0435.23Show/hide
Query:  RRVDVGKIIADEISGCWKKKVGKLFFPNTITMLCKRAGVPENEGDVIL---FDKGIIDTPNLARL-QRTQEARQ-GGLVYDINMILEQ
        R ++VGK++   I  C K++ GKLFFP+ I  L  +AGVPE   D+++    +K  ID   +++L +R++  R+  G+   +  +LEQ
Subjt:  RRVDVGKIIADEISGCWKKKVGKLFFPNTITMLCKRAGVPENEGDVIL---FDKGIIDTPNLARL-QRTQEARQ-GGLVYDINMILEQ

TrEMBL top hitse value%identityAlignment
A0A1U8M891 nucleolar protein 58-like1.9e-0432.84Show/hide
Query:  RRVDVGKIIADEISGCWKKKVGKLFFPNTITMLCKRAGVPENEGDVILFDKGIIDTPNLARLQRTQE
        R++DVG I+  EIS C  +++G L FP+ + +LC++ G+   +G+ +L +K  I+   + R+ R ++
Subjt:  RRVDVGKIIADEISGCWKKKVGKLFFPNTITMLCKRAGVPENEGDVILFDKGIIDTPNLARLQRTQE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGGAGGTACCCAAACGTCGTCGCATTAAGAGAAAAGCAGGCCGCATCAAGGTAGTTCGAACTGATACCCCCTCGCCTCCAACTACTGACTCTGAAAGAGAGAATGC
AGAGAAAGAAGAGCATGAGAAGAAGGAGGCCGAGGATAAAGCAAGAGAGGAAGCAGAGAAAAAGGCTGAAGAAGAAAGATTGTGCAAGCAAAGGGCAGATAGGGGCAAGA
GTGTTGCTGAGGCATTGGAGGAACCTGATGAAATAGAAGAGTCACAATTGTCGTATGATCGCTTCGTCAACAATCTTGCCAGAGCAAAATATGCAGAGTTGCTGAAAAGA
GACTTCCTGTTTGAAGGGGGATTTAGTGGTGATCTTCCACATTTTCTGAGGACCGGTATTGCAGACAAAGGTTGCTTCCAACGACCCATGACTCGACGTGTTGATGTGGG
AAAAATTATTGCTGATGAAATATCTGGATGTTGGAAGAAGAAAGTGGGGAAGTTGTTTTTCCCGAATACCATTACCATGCTTTGCAAGCGAGCAGGGGTTCCAGAGAATG
AAGGAGATGTGATATTATTTGACAAGGGAATCATCGACACGCCTAACTTGGCACGGCTTCAGCGTACGCAAGAGGCACGTCAAGGTGGGCTTGTCTACGACATCAACATG
ATTTTAGAACAACTCGCACTTTCGGCCAGCAGACAGGAGTTAATGAGATTATGTCATGAGGCTTCTCTTTGCATGGAAGATGTCTATATAAGGAGTATGAATCAGATTCA
AAGGAAGGAGAGCCATTTTCCATATTGTTATGCTGCTGGATTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCGGAGGTACCCAAACGTCGTCGCATTAAGAGAAAAGCAGGCCGCATCAAGGTAGTTCGAACTGATACCCCCTCGCCTCCAACTACTGACTCTGAAAGAGAGAATGC
AGAGAAAGAAGAGCATGAGAAGAAGGAGGCCGAGGATAAAGCAAGAGAGGAAGCAGAGAAAAAGGCTGAAGAAGAAAGATTGTGCAAGCAAAGGGCAGATAGGGGCAAGA
GTGTTGCTGAGGCATTGGAGGAACCTGATGAAATAGAAGAGTCACAATTGTCGTATGATCGCTTCGTCAACAATCTTGCCAGAGCAAAATATGCAGAGTTGCTGAAAAGA
GACTTCCTGTTTGAAGGGGGATTTAGTGGTGATCTTCCACATTTTCTGAGGACCGGTATTGCAGACAAAGGTTGCTTCCAACGACCCATGACTCGACGTGTTGATGTGGG
AAAAATTATTGCTGATGAAATATCTGGATGTTGGAAGAAGAAAGTGGGGAAGTTGTTTTTCCCGAATACCATTACCATGCTTTGCAAGCGAGCAGGGGTTCCAGAGAATG
AAGGAGATGTGATATTATTTGACAAGGGAATCATCGACACGCCTAACTTGGCACGGCTTCAGCGTACGCAAGAGGCACGTCAAGGTGGGCTTGTCTACGACATCAACATG
ATTTTAGAACAACTCGCACTTTCGGCCAGCAGACAGGAGTTAATGAGATTATGTCATGAGGCTTCTCTTTGCATGGAAGATGTCTATATAAGGAGTATGAATCAGATTCA
AAGGAAGGAGAGCCATTTTCCATATTGTTATGCTGCTGGATTTTGA
Protein sequenceShow/hide protein sequence
MPEVPKRRRIKRKAGRIKVVRTDTPSPPTTDSERENAEKEEHEKKEAEDKAREEAEKKAEEERLCKQRADRGKSVAEALEEPDEIEESQLSYDRFVNNLARAKYAELLKR
DFLFEGGFSGDLPHFLRTGIADKGCFQRPMTRRVDVGKIIADEISGCWKKKVGKLFFPNTITMLCKRAGVPENEGDVILFDKGIIDTPNLARLQRTQEARQGGLVYDINM
ILEQLALSASRQELMRLCHEASLCMEDVYIRSMNQIQRKESHFPYCYAAGF