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Spg026599 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026599
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description4-hydroxy-tetrahydrodipicolinate synthase
Genome locationscaffold6:16932626..16940219
RNA-Seq ExpressionSpg026599
SyntenySpg026599
Gene Ontology termsGO:0009089 - lysine biosynthetic process via diaminopimelate (biological process)
GO:0019877 - diaminopimelate biosynthetic process (biological process)
GO:0008840 - 4-hydroxy-tetrahydrodipicolinate synthase (molecular function)
InterPro domainsIPR002220 - DapA-like
IPR013785 - Aldolase-type TIM barrel
IPR020624 - Schiff base-forming aldolase, conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582569.1 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]2.7e-3594.94Show/hide
Query:  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKL
        TSADDIKSLRLVTAIKTPYLPDGRFD+EAYDALVNRQIENGA+ VIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIK+
Subjt:  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKL

KAG7018953.1 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]2.7e-3594.94Show/hide
Query:  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKL
        TSADDIKSLRLVTAIKTPYLPDGRFD+EAYDALVNRQIENGA+ VIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIK+
Subjt:  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKL

XP_022980330.1 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic-like [Cucurbita maxima]2.7e-3594.94Show/hide
Query:  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKL
        TSADDIKSLRLVTAIKTPYLPDGRFD+EAYDALVNRQIENGA+ VIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIK+
Subjt:  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKL

XP_023528690.1 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic-like [Cucurbita pepo subsp. pepo]2.7e-3594.94Show/hide
Query:  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKL
        TSADDIKSLRLVTAIKTPYLPDGRFD+EAYDALVNRQIENGA+ VIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIK+
Subjt:  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKL

XP_038898920.1 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic-like [Benincasa hispida]9.1e-3696.2Show/hide
Query:  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKL
        TSADDIKSLRLVTAIKTPYLPDGRFD+EAYDALVNRQIENGA GVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIK+
Subjt:  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKL

TrEMBL top hitse value%identityAlignment
A0A1S3AWB5 4-hydroxy-tetrahydrodipicolinate synthase2.2e-3594.94Show/hide
Query:  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKL
        T ADDIKSLRLVTAIKTPYLPDGRFD+EAYDALVNRQIENGA GVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIK+
Subjt:  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKL

A0A5A7U5X2 4-hydroxy-tetrahydrodipicolinate synthase2.2e-3594.94Show/hide
Query:  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKL
        T ADDIKSLRLVTAIKTPYLPDGRFD+EAYDALVNRQIENGA GVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIK+
Subjt:  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKL

A0A6J1CZ39 4-hydroxy-tetrahydrodipicolinate synthase1.7e-3594.94Show/hide
Query:  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKL
        TSADDIKSLRLVTAIKTPYLPDGRFD+EAYDALVN QIENGA+GVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIK+
Subjt:  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKL

A0A6J1E8W7 4-hydroxy-tetrahydrodipicolinate synthase1.3e-3594.94Show/hide
Query:  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKL
        TSADDIKSLRLVTAIKTPYLPDGRFD+EAYDALVNRQIENGA+ VIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIK+
Subjt:  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKL

A0A6J1IVZ1 4-hydroxy-tetrahydrodipicolinate synthase1.3e-3594.94Show/hide
Query:  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKL
        TSADDIKSLRLVTAIKTPYLPDGRFD+EAYDALVNRQIENGA+ VIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIK+
Subjt:  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKL

SwissProt top hitse value%identityAlignment
P24846 4-hydroxy-tetrahydrodipicolinate synthase 1, chloroplastic2.6e-3381.01Show/hide
Query:  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKL
        TS D IKSLRL+TA+KTPYLPDGRFD+EAYD+L+N QI  GA+GVIVGGTTGEG LMSWDEHIMLIGHTVNCFG +IK+
Subjt:  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKL

Q39535 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic8.9e-3482.28Show/hide
Query:  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKL
        TS DDI SLRL+TA+KTPYLPDGRFD+EAYD+L+N QIE GA+GVIVGGTTGEG LMSWDEHIMLIGHTVNCFG  IK+
Subjt:  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKL

Q42948 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic1.9e-3689.87Show/hide
Query:  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKL
        T ADDIK+LRL+TAIKTPYLPDGRFD+EAYD LVN QIENGA+GVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIK+
Subjt:  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKL

Q9FVC8 4-hydroxy-tetrahydrodipicolinate synthase 2, chloroplastic2.8e-3586.08Show/hide
Query:  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKL
        T+ DDIK+LR++TAIKTPYLPDGRFD+EAYD LVN QI+NGA+GVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIK+
Subjt:  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKL

Q9LZX6 4-hydroxy-tetrahydrodipicolinate synthase 1, chloroplastic6.2e-3584.81Show/hide
Query:  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKL
        T+ DDI+SLR++TAIKTPYLPDGRFD++AYD LVN QIENGA+GVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGG IK+
Subjt:  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKL

Arabidopsis top hitse value%identityAlignment
AT1G71480.1 Nuclear transport factor 2 (NTF2) family protein2.3e-2471.95Show/hide
Query:  ILLFFKKFNHSISKDLYFVIDDISTEDSSAV------EWKGKEFPFSKGCSFYRLVVADCKRQIIYARDSVEPAFKPGEMAL
        IL FF KF  S S DL FVIDDISTEDSSAV      EWKGK FPFSKGCSFYRL V D KRQI+Y RD VEPA KPGE  L
Subjt:  ILLFFKKFNHSISKDLYFVIDDISTEDSSAV------EWKGKEFPFSKGCSFYRLVVADCKRQIIYARDSVEPAFKPGEMAL

AT2G45440.1 dihydrodipicolinate synthase2.0e-3686.08Show/hide
Query:  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKL
        T+ DDIK+LR++TAIKTPYLPDGRFD+EAYD LVN QI+NGA+GVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIK+
Subjt:  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKL

AT3G60880.1 dihydrodipicolinate synthase 14.4e-3684.81Show/hide
Query:  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKL
        T+ DDI+SLR++TAIKTPYLPDGRFD++AYD LVN QIENGA+GVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGG IK+
Subjt:  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKL

AT3G60880.2 dihydrodipicolinate synthase 14.4e-3684.81Show/hide
Query:  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKL
        T+ DDI+SLR++TAIKTPYLPDGRFD++AYD LVN QIENGA+GVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGG IK+
Subjt:  TSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGAKGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKL

AT5G41470.1 Nuclear transport factor 2 (NTF2) family protein5.6e-0733.33Show/hide
Query:  QDILLFFKKFNHSISKDLYFVIDDISTED--SSAV----EWKGKEFPFSKGCSFYRLVVADCKRQIIYARDSVEPAFKPGEMALKQL
        Q+ + FF++   S+ +++ F ++++   D  S+AV    EWKG++ PF++GCSFY  +    +  I  AR  +E   KPG + L  L
Subjt:  QDILLFFKKFNHSISKDLYFVIDDISTED--SSAV----EWKGKEFPFSKGCSFYRLVVADCKRQIIYARDSVEPAFKPGEMALKQL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGGAAATGGGACAGCGTCGCGACGCTGTGACGTACTCATATTGGGCGGCAAGTCATCCCAGCGTCTCGATGCTAAGGGCAGTGTCTCGATGCTGACCTTCGGCCA
GAACTTCCAACTTGACCGTTCTTCGCCAACGACGCTTCAACGAACGAAAACGCAGCAGCCTCCTTGTAGTTTCTTCGCTGGAAAATTCTTCTTCAAAGACACAATAACCA
CAGAGGTTACACTGGTGGTCGCTGAAGCTCCAGTCGCTGAGGTTGCATACGTCGTCATCGAAGCTCAGGAAGCCCGTGTCCAATTGATGCAAGACATTCTGCTTTTCTTC
AAAAAGTTTAACCATTCCATCAGTAAGGATCTCTATTTTGTTATTGACGATATATCCACCGAAGACTCCTCAGCTGTGGAATGGAAAGGGAAAGAGTTTCCTTTTAGTAA
GGGATGCAGCTTTTATCGCTTGGTTGTTGCTGATTGCAAGAGACAAATAATCTATGCACGAGACAGTGTTGAGCCTGCATTCAAGCCTGGGGAGATGGCTTTGAAACAAC
TAGCAAGCCCTAGCTCGGATGAAGAAGTGTGGTTTGATATGAAGGAATGTTTAACCTTATGTACCCAATTTATCATATTCCCATGGGGAGAACTATCAAGGACTTGTCCA
CTTGCTTCTTCACTTATCACACTCTATCATCTTCATTTTAAGGTTGCTTATGCTATGACAATATGGAAACAAGTGAAGCCAACCCTTGCAGCAAACTTGTGGAATGAAGC
TTTGAACATTAGACTTAGAACAAAGAATATTTATGATTATGAAACCGTGTTGGTGTGTGTATTCGATGAGTCACAAAATAATCCCTATTTTTGGACATCAGCAGATGATA
TCAAGTCTCTTAGACTTGTAACTGCGATTAAAACACCATATCTTCCCGATGGTAGATTTGATATAGAAGCTTATGATGCCTTGGTGAACCGTCAGATTGAAAATGGAGCT
AAAGGTGTGATTGTGGGTGGCACAACTGGTGAAGGTCAGTTGATGAGCTGGGATGAACACATAATGCTTATTGGTCACACTGTCAACTGTTTTGGTGGATCAATCAAGCT
TGGATGCATGAATGGTTTCGACAAGGGTCCCCTTTTTTGTATGGAAATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGGAAATGGGACAGCGTCGCGACGCTGTGACGTACTCATATTGGGCGGCAAGTCATCCCAGCGTCTCGATGCTAAGGGCAGTGTCTCGATGCTGACCTTCGGCCA
GAACTTCCAACTTGACCGTTCTTCGCCAACGACGCTTCAACGAACGAAAACGCAGCAGCCTCCTTGTAGTTTCTTCGCTGGAAAATTCTTCTTCAAAGACACAATAACCA
CAGAGGTTACACTGGTGGTCGCTGAAGCTCCAGTCGCTGAGGTTGCATACGTCGTCATCGAAGCTCAGGAAGCCCGTGTCCAATTGATGCAAGACATTCTGCTTTTCTTC
AAAAAGTTTAACCATTCCATCAGTAAGGATCTCTATTTTGTTATTGACGATATATCCACCGAAGACTCCTCAGCTGTGGAATGGAAAGGGAAAGAGTTTCCTTTTAGTAA
GGGATGCAGCTTTTATCGCTTGGTTGTTGCTGATTGCAAGAGACAAATAATCTATGCACGAGACAGTGTTGAGCCTGCATTCAAGCCTGGGGAGATGGCTTTGAAACAAC
TAGCAAGCCCTAGCTCGGATGAAGAAGTGTGGTTTGATATGAAGGAATGTTTAACCTTATGTACCCAATTTATCATATTCCCATGGGGAGAACTATCAAGGACTTGTCCA
CTTGCTTCTTCACTTATCACACTCTATCATCTTCATTTTAAGGTTGCTTATGCTATGACAATATGGAAACAAGTGAAGCCAACCCTTGCAGCAAACTTGTGGAATGAAGC
TTTGAACATTAGACTTAGAACAAAGAATATTTATGATTATGAAACCGTGTTGGTGTGTGTATTCGATGAGTCACAAAATAATCCCTATTTTTGGACATCAGCAGATGATA
TCAAGTCTCTTAGACTTGTAACTGCGATTAAAACACCATATCTTCCCGATGGTAGATTTGATATAGAAGCTTATGATGCCTTGGTGAACCGTCAGATTGAAAATGGAGCT
AAAGGTGTGATTGTGGGTGGCACAACTGGTGAAGGTCAGTTGATGAGCTGGGATGAACACATAATGCTTATTGGTCACACTGTCAACTGTTTTGGTGGATCAATCAAGCT
TGGATGCATGAATGGTTTCGACAAGGGTCCCCTTTTTTGTATGGAAATGTGA
Protein sequenceShow/hide protein sequence
MAGNGTASRRCDVLILGGKSSQRLDAKGSVSMLTFGQNFQLDRSSPTTLQRTKTQQPPCSFFAGKFFFKDTITTEVTLVVAEAPVAEVAYVVIEAQEARVQLMQDILLFF
KKFNHSISKDLYFVIDDISTEDSSAVEWKGKEFPFSKGCSFYRLVVADCKRQIIYARDSVEPAFKPGEMALKQLASPSSDEEVWFDMKECLTLCTQFIIFPWGELSRTCP
LASSLITLYHLHFKVAYAMTIWKQVKPTLAANLWNEALNIRLRTKNIYDYETVLVCVFDESQNNPYFWTSADDIKSLRLVTAIKTPYLPDGRFDIEAYDALVNRQIENGA
KGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKLGCMNGFDKGPLFCMEM