; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg026620 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026620
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetroelement pol polyprotein-like
Genome locationscaffold6:18369473..18381838
RNA-Seq ExpressionSpg026620
SyntenySpg026620
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_030477908.1 uncharacterized protein LOC115694945 [Cannabis sativa]3.9e-0662.07Show/hide
Query:  GLPQQNKQAIHQNSG--NSLESMMKDYMARNDVVIQSQQASLRVLELQVGQLANELKA
        G  QQ + + H  +   +SLES+M+DYMA+ND VIQSQ ASLR LELQ+G LANELKA
Subjt:  GLPQQNKQAIHQNSG--NSLESMMKDYMARNDVVIQSQQASLRVLELQVGQLANELKA

XP_030494874.1 uncharacterized protein LOC115710657 [Cannabis sativa]3.9e-0662.07Show/hide
Query:  GLPQQNKQAIHQNSG--NSLESMMKDYMARNDVVIQSQQASLRVLELQVGQLANELKA
        G  QQ + + H  +   +SLES+M+DYMA+ND VIQSQ ASLR LELQ+G LANELKA
Subjt:  GLPQQNKQAIHQNSG--NSLESMMKDYMARNDVVIQSQQASLRVLELQVGQLANELKA

XP_030502440.1 uncharacterized protein LOC115717596 [Cannabis sativa]5.1e-0663.79Show/hide
Query:  NQQGLPQQNKQAIHQNSGNSLESMMKDYMARNDVVIQSQQASLRVLELQVGQLANELK
        +QQ  PQQ  Q    +  +SLES+M+DYMA+NDVVIQSQ ASLR LE+Q+GQLAN+LK
Subjt:  NQQGLPQQNKQAIHQNSGNSLESMMKDYMARNDVVIQSQQASLRVLELQVGQLANELK

XP_030509265.1 uncharacterized protein LOC115723943 [Cannabis sativa]3.9e-0662.07Show/hide
Query:  GLPQQNKQAIHQNSG--NSLESMMKDYMARNDVVIQSQQASLRVLELQVGQLANELKA
        G  QQ + + H  +   +SLES+M+DYMA+ND VIQSQ ASLR LELQ+G LANELKA
Subjt:  GLPQQNKQAIHQNSG--NSLESMMKDYMARNDVVIQSQQASLRVLELQVGQLANELKA

XP_030510138.1 uncharacterized protein LOC115724905 [Cannabis sativa]3.9e-0659.68Show/hide
Query:  QNQQGLPQQNKQAIHQNSG---NSLESMMKDYMARNDVVIQSQQASLRVLELQVGQLANELK
        Q +Q  P    Q  HQ  G   +SLES+M+DYMA+ND VIQSQ ASLR LE+Q+GQLAN+LK
Subjt:  QNQQGLPQQNKQAIHQNSG---NSLESMMKDYMARNDVVIQSQQASLRVLELQVGQLANELK

TrEMBL top hitse value%identityAlignment
A0A6J1DVZ9 uncharacterized protein LOC1110249704.6e-0534.46Show/hide
Query:  SLANALKNITVVSNVQQPP-----VVEPAAVVNQN----------QQGLPQQNKQAIHQ---NSGNSLESMMKDYMARNDVVIQSQQASLRVLELQVGQL
        +L N +KN+   +     P     + EP   VNQN          Q GL   N+Q   +   NS NS+E+MM++YM RND +IQSQ A  R LE+Q+GQ+
Subjt:  SLANALKNITVVSNVQQPP-----VVEPAAVVNQN----------QQGLPQQNKQAIHQ---NSGNSLESMMKDYMARNDVVIQSQQASLRVLELQVGQL

Query:  ANELKALKDWNSDDLDNLVS-ILSGLWTPVHEELSFDLYGEKSAAEGK
        AN+LK      +D +++     L  +     E +  D    K AAE +
Subjt:  ANELKALKDWNSDDLDNLVS-ILSGLWTPVHEELSFDLYGEKSAAEGK

A0A6J1DYG0 uncharacterized protein LOC1110257643.5e-0550Show/hide
Query:  QQPPVVEPAAVVNQNQQGLPQQNKQAIHQNSGNSLESMMKDYMARNDVVIQSQQASLRVLELQVGQLANELK
        +QP V      +   QQ   Q+ +    QN+ ++LE+MMK+YMAR D VIQSQ AS+R  E Q+GQLANELK
Subjt:  QQPPVVEPAAVVNQNQQGLPQQNKQAIHQNSGNSLESMMKDYMARNDVVIQSQQASLRVLELQVGQLANELK

A0A6J1G7Q6 uncharacterized protein LOC1114515989.3e-0652.38Show/hide
Query:  NVQQPPVVE-PAAVVNQNQQGLPQQNKQAIHQNSGNS---------LESMMKDYMARNDVVIQSQQASLRVLELQVGQLANELK
        N Q PP    P     QNQ  L   ++QA  Q  G S         LES++K+YMARND VIQSQQ SLR LE+QVGQLANEL+
Subjt:  NVQQPPVVE-PAAVVNQNQQGLPQQNKQAIHQNSGNS---------LESMMKDYMARNDVVIQSQQASLRVLELQVGQLANELK

A0A6J1GJ68 uncharacterized protein LOC1114543441.6e-0557.38Show/hide
Query:  VNQNQQGLPQQNKQAIHQNSGNSLESMMKDYMARNDVVIQSQQASLRVLELQVGQLANELK
        VN   +G+ Q         SG S+ES++K+YMA+NDVVIQSQQASL+ LE+QVGQLA EL+
Subjt:  VNQNQQGLPQQNKQAIHQNSGNSLESMMKDYMARNDVVIQSQQASLRVLELQVGQLANELK

A0A6J1H7K8 uncharacterized protein LOC1114611679.3e-0657.58Show/hide
Query:  QQGLPQQNKQAIHQNSG---------NSLESMMKDYMARNDVVIQSQQASLRVLELQVGQLANELK
        Q  L   ++QA  Q  G          SLES++K+YMA+NDVVIQSQQASLR LE+QVGQLANEL+
Subjt:  QQGLPQQNKQAIHQNSG---------NSLESMMKDYMARNDVVIQSQQASLRVLELQVGQLANELK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATTAGCTAACGCACTTAAAAACATAACTGTGGTAAGCAATGTTCAGCAGCCGCCAGTTGTGGAGCCTGCTGCAGTTGTAAACCAAAACCAGCAAGGATTGCCCCA
GCAAAATAAGCAGGCTATCCATCAAAATTCGGGTAATTCTCTGGAGTCAATGATGAAGGATTATATGGCACGAAATGATGTCGTAATCCAAAGTCAACAGGCTTCATTGA
GAGTCCTAGAGTTGCAAGTGGGTCAGCTAGCTAATGAGCTGAAGGCACTAAAGGATTGGAATTCTGATGACCTAGACAACTTAGTCTCAATCCTGAGTGGATTATGGACT
CCTGTTCACGAGGAGTTGTCCTTTGATTTGTATGGTGAGAAGAGTGCAGCTGAGGGAAAAGGTCTTGGCCTTTACCTATATATAGGACCCCTGGGGTGGGGTGAAAGGCA
TCCCATTGTCTCTCCTTCTCTCAGAGATCTCTCCCAAAAGACTCCCACAAGTCTCTTGCTTCAAGAAGTCTTAGAGATATACCGGTGTAGCCGATTGGCGGTGTTCGCAC
AAGAGGGTTGCTGCATTTTCAATCTTATTAGCAAGAAAAGGGGAATTGATCAAGGCTTTCTACAAAAGTTCAGAGTCCCAAAGAGTTCCAATGATATAAACTTGTTTGAT
AAGGGGATTATTGACACTGCCAATCTAGCTAGGCTTCAAAAAGGTGAGGTGCGCCAGGGTGGTTTGTTGTGCGGTGTCCATAGAGTGCTGGAGCAGCTTGAGATGGTTCT
GCTTGGACTAGGTTGCTTTAAGGCTGAAGAACAAAAGAATAAATCCCCTGAAATATGTGTTCAAATATGTCTGATAATAGAGCTAAGCTGTGCAGTGCTTGGTTTTGCAG
GATGCTCAGGTGAGTTAGTATTGCTCGGGACGCGCAATAGTTCAAGTTTAAAATATTGCGGAGTGACCCGCGGGAGCAAAATCCGTGATCCAGCAAAGCAGGAAGCAAAA
CTGCCACGTAACAGCTCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCATTAGCTAACGCACTTAAAAACATAACTGTGGTAAGCAATGTTCAGCAGCCGCCAGTTGTGGAGCCTGCTGCAGTTGTAAACCAAAACCAGCAAGGATTGCCCCA
GCAAAATAAGCAGGCTATCCATCAAAATTCGGGTAATTCTCTGGAGTCAATGATGAAGGATTATATGGCACGAAATGATGTCGTAATCCAAAGTCAACAGGCTTCATTGA
GAGTCCTAGAGTTGCAAGTGGGTCAGCTAGCTAATGAGCTGAAGGCACTAAAGGATTGGAATTCTGATGACCTAGACAACTTAGTCTCAATCCTGAGTGGATTATGGACT
CCTGTTCACGAGGAGTTGTCCTTTGATTTGTATGGTGAGAAGAGTGCAGCTGAGGGAAAAGGTCTTGGCCTTTACCTATATATAGGACCCCTGGGGTGGGGTGAAAGGCA
TCCCATTGTCTCTCCTTCTCTCAGAGATCTCTCCCAAAAGACTCCCACAAGTCTCTTGCTTCAAGAAGTCTTAGAGATATACCGGTGTAGCCGATTGGCGGTGTTCGCAC
AAGAGGGTTGCTGCATTTTCAATCTTATTAGCAAGAAAAGGGGAATTGATCAAGGCTTTCTACAAAAGTTCAGAGTCCCAAAGAGTTCCAATGATATAAACTTGTTTGAT
AAGGGGATTATTGACACTGCCAATCTAGCTAGGCTTCAAAAAGGTGAGGTGCGCCAGGGTGGTTTGTTGTGCGGTGTCCATAGAGTGCTGGAGCAGCTTGAGATGGTTCT
GCTTGGACTAGGTTGCTTTAAGGCTGAAGAACAAAAGAATAAATCCCCTGAAATATGTGTTCAAATATGTCTGATAATAGAGCTAAGCTGTGCAGTGCTTGGTTTTGCAG
GATGCTCAGGTGAGTTAGTATTGCTCGGGACGCGCAATAGTTCAAGTTTAAAATATTGCGGAGTGACCCGCGGGAGCAAAATCCGTGATCCAGCAAAGCAGGAAGCAAAA
CTGCCACGTAACAGCTCGTAA
Protein sequenceShow/hide protein sequence
MSLANALKNITVVSNVQQPPVVEPAAVVNQNQQGLPQQNKQAIHQNSGNSLESMMKDYMARNDVVIQSQQASLRVLELQVGQLANELKALKDWNSDDLDNLVSILSGLWT
PVHEELSFDLYGEKSAAEGKGLGLYLYIGPLGWGERHPIVSPSLRDLSQKTPTSLLLQEVLEIYRCSRLAVFAQEGCCIFNLISKKRGIDQGFLQKFRVPKSSNDINLFD
KGIIDTANLARLQKGEVRQGGLLCGVHRVLEQLEMVLLGLGCFKAEEQKNKSPEICVQICLIIELSCAVLGFAGCSGELVLLGTRNSSSLKYCGVTRGSKIRDPAKQEAK
LPRNSS