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Spg026634 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026634
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold6:18178265..18179581
RNA-Seq ExpressionSpg026634
SyntenySpg026634
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040194.1 gag/pol protein [Cucumis melo var. makuwa]5.0e-1557.65Show/hide
Query:  VEIELPVPDTLPTSAESSSSSSSTWVELYIESVHIVN----------------EGQRVSLEEDNVCWLHAIFLTKLACGPGGGVT
        VEIELP+PDTLPTSAESS S+SSTW+ELY ESVH+                  EG    +  D+VCWLHAIF  K A GPGGGVT
Subjt:  VEIELPVPDTLPTSAESSSSSSSTWVELYIESVHIVN----------------EGQRVSLEEDNVCWLHAIFLTKLACGPGGGVT

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]5.3e-1742.07Show/hide
Query:  MTEIPSPRLYGTVYTQ-----------------VEIELPVPDTLPTSAESSSSSSSTWVELYIESVHIVNEGQRVSLEEDNVCWLHAIFLTKLACGPGGG
        MTEI SPRLYGTV TQ                 VEIELPVPDTLPTSAESS S+SSTW+ELY+E VH+        + ED+VCWLHA+F  K A GPGGG
Subjt:  MTEIPSPRLYGTVYTQ-----------------VEIELPVPDTLPTSAESSSSSSSTWVELYIESVHIVNEGQRVSLEEDNVCWLHAIFLTKLACGPGGG

Query:  VTWGLNGRNER----------DGEEEEVQVTPEAPKTKAKKKKTPEEKEAKRRRRQQRAEVEEV
        V      +  R           G+ E    TP        ++     +E  R  R + ++ E++
Subjt:  VTWGLNGRNER----------DGEEEEVQVTPEAPKTKAKKKKTPEEKEAKRRRRQQRAEVEEV

TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]8.5e-1544.59Show/hide
Query:  MTEIPSPRLYGTVYTQ-----------------VEIELPVPDTLPTSAESSSSSSSTWVELYIESVHIVN----------------EGQRVSLEEDNVCW
        MTEI S RL GTV TQ                 VEIELPVPDTLPTSAE   S+SSTW+ELY+ESVH+                  EG    +  D+VCW
Subjt:  MTEIPSPRLYGTVYTQ-----------------VEIELPVPDTLPTSAESSSSSSSTWVELYIESVHIVN----------------EGQRVSLEEDNVCW

Query:  LHAIFLTKLACGPGGGVTWGLNGRNERD--GEEEEVQVTPEAPKTKAK
        LHA+F  K A GP GGVT G  G  ++D   EE++     E    K K
Subjt:  LHAIFLTKLACGPGGGVTWGLNGRNERD--GEEEEVQVTPEAPKTKAK

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]5.0e-1557.65Show/hide
Query:  VEIELPVPDTLPTSAESSSSSSSTWVELYIESVHIVN----------------EGQRVSLEEDNVCWLHAIFLTKLACGPGGGVT
        VEIELP+PDTLPTSAESS S+SSTW+ELY ESVH+                  EG    +  D+VCWLHAIF  K A GPGGGVT
Subjt:  VEIELPVPDTLPTSAESSSSSSSTWVELYIESVHIVN----------------EGQRVSLEEDNVCWLHAIFLTKLACGPGGGVT

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]5.3e-1742.07Show/hide
Query:  MTEIPSPRLYGTVYTQ-----------------VEIELPVPDTLPTSAESSSSSSSTWVELYIESVHIVNEGQRVSLEEDNVCWLHAIFLTKLACGPGGG
        MTEI SPRLYGTV TQ                 VEIELPVPDTLPTSAESS S+SSTW+ELY+E VH+        + ED+VCWLHA+F  K A GPGGG
Subjt:  MTEIPSPRLYGTVYTQ-----------------VEIELPVPDTLPTSAESSSSSSSTWVELYIESVHIVNEGQRVSLEEDNVCWLHAIFLTKLACGPGGG

Query:  VTWGLNGRNER----------DGEEEEVQVTPEAPKTKAKKKKTPEEKEAKRRRRQQRAEVEEV
        V      +  R           G+ E    TP        ++     +E  R  R + ++ E++
Subjt:  VTWGLNGRNER----------DGEEEEVQVTPEAPKTKAKKKKTPEEKEAKRRRRQQRAEVEEV

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein2.4e-1557.65Show/hide
Query:  VEIELPVPDTLPTSAESSSSSSSTWVELYIESVHIVN----------------EGQRVSLEEDNVCWLHAIFLTKLACGPGGGVT
        VEIELP+PDTLPTSAESS S+SSTW+ELY ESVH+                  EG    +  D+VCWLHAIF  K A GPGGGVT
Subjt:  VEIELPVPDTLPTSAESSSSSSSTWVELYIESVHIVN----------------EGQRVSLEEDNVCWLHAIFLTKLACGPGGGVT

A0A5A7VMG9 Reverse transcriptase2.6e-1742.07Show/hide
Query:  MTEIPSPRLYGTVYTQ-----------------VEIELPVPDTLPTSAESSSSSSSTWVELYIESVHIVNEGQRVSLEEDNVCWLHAIFLTKLACGPGGG
        MTEI SPRLYGTV TQ                 VEIELPVPDTLPTSAESS S+SSTW+ELY+E VH+        + ED+VCWLHA+F  K A GPGGG
Subjt:  MTEIPSPRLYGTVYTQ-----------------VEIELPVPDTLPTSAESSSSSSSTWVELYIESVHIVNEGQRVSLEEDNVCWLHAIFLTKLACGPGGG

Query:  VTWGLNGRNER----------DGEEEEVQVTPEAPKTKAKKKKTPEEKEAKRRRRQQRAEVEEV
        V      +  R           G+ E    TP        ++     +E  R  R + ++ E++
Subjt:  VTWGLNGRNER----------DGEEEEVQVTPEAPKTKAKKKKTPEEKEAKRRRRQQRAEVEEV

A0A5D3CCC7 DNA/RNA polymerases superfamily protein4.1e-1544.59Show/hide
Query:  MTEIPSPRLYGTVYTQ-----------------VEIELPVPDTLPTSAESSSSSSSTWVELYIESVHIVN----------------EGQRVSLEEDNVCW
        MTEI S RL GTV TQ                 VEIELPVPDTLPTSAE   S+SSTW+ELY+ESVH+                  EG    +  D+VCW
Subjt:  MTEIPSPRLYGTVYTQ-----------------VEIELPVPDTLPTSAESSSSSSSTWVELYIESVHIVN----------------EGQRVSLEEDNVCW

Query:  LHAIFLTKLACGPGGGVTWGLNGRNERD--GEEEEVQVTPEAPKTKAK
        LHA+F  K A GP GGVT G  G  ++D   EE++     E    K K
Subjt:  LHAIFLTKLACGPGGGVTWGLNGRNERD--GEEEEVQVTPEAPKTKAK

A0A5D3DR18 Gag/pol protein2.4e-1557.65Show/hide
Query:  VEIELPVPDTLPTSAESSSSSSSTWVELYIESVHIVN----------------EGQRVSLEEDNVCWLHAIFLTKLACGPGGGVT
        VEIELP+PDTLPTSAESS S+SSTW+ELY ESVH+                  EG    +  D+VCWLHAIF  K A GPGGGVT
Subjt:  VEIELPVPDTLPTSAESSSSSSSTWVELYIESVHIVN----------------EGQRVSLEEDNVCWLHAIFLTKLACGPGGGVT

A0A5D3DX39 Reverse transcriptase2.6e-1742.07Show/hide
Query:  MTEIPSPRLYGTVYTQ-----------------VEIELPVPDTLPTSAESSSSSSSTWVELYIESVHIVNEGQRVSLEEDNVCWLHAIFLTKLACGPGGG
        MTEI SPRLYGTV TQ                 VEIELPVPDTLPTSAESS S+SSTW+ELY+E VH+        + ED+VCWLHA+F  K A GPGGG
Subjt:  MTEIPSPRLYGTVYTQ-----------------VEIELPVPDTLPTSAESSSSSSSTWVELYIESVHIVNEGQRVSLEEDNVCWLHAIFLTKLACGPGGG

Query:  VTWGLNGRNER----------DGEEEEVQVTPEAPKTKAKKKKTPEEKEAKRRRRQQRAEVEEV
        V      +  R           G+ E    TP        ++     +E  R  R + ++ E++
Subjt:  VTWGLNGRNER----------DGEEEEVQVTPEAPKTKAKKKKTPEEKEAKRRRRQQRAEVEEV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATACCGAGCCCGAGGCTATATGGTACCGTGTACACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGTTCAAG
CTCCAGTACGTGGGTGGAGTTGTACATTGAGTCTGTCCATATTGTAAATGAGGGTCAACGGGTATCGTTAGAGGAGGATAATGTCTGTTGGCTTCACGCCATCTTCCTGA
CTAAGCTAGCATGTGGTCCGGGAGGGGGTGTGACATGGGGCTTAAACGGACGAAATGAAAGGGATGGTGAGGAAGAAGAGGTGCAGGTTACACCTGAAGCACCAAAAACT
AAGGCAAAGAAGAAGAAGACGCCGGAAGAAAAAGAAGCTAAGAGAAGGAGAAGACAACAGAGGGCTGAAGTTGAAGAGGTAGTGCAAAAAGTAGTGAAAGACGTTGCTGC
TGAGGTGGTTGAGGAGGAAAACCCGAAGGAACCTGAAGAACAGAATCCTGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATACCGAGCCCGAGGCTATATGGTACCGTGTACACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGTTCAAG
CTCCAGTACGTGGGTGGAGTTGTACATTGAGTCTGTCCATATTGTAAATGAGGGTCAACGGGTATCGTTAGAGGAGGATAATGTCTGTTGGCTTCACGCCATCTTCCTGA
CTAAGCTAGCATGTGGTCCGGGAGGGGGTGTGACATGGGGCTTAAACGGACGAAATGAAAGGGATGGTGAGGAAGAAGAGGTGCAGGTTACACCTGAAGCACCAAAAACT
AAGGCAAAGAAGAAGAAGACGCCGGAAGAAAAAGAAGCTAAGAGAAGGAGAAGACAACAGAGGGCTGAAGTTGAAGAGGTAGTGCAAAAAGTAGTGAAAGACGTTGCTGC
TGAGGTGGTTGAGGAGGAAAACCCGAAGGAACCTGAAGAACAGAATCCTGGATAG
Protein sequenceShow/hide protein sequence
MTEIPSPRLYGTVYTQVEIELPVPDTLPTSAESSSSSSSTWVELYIESVHIVNEGQRVSLEEDNVCWLHAIFLTKLACGPGGGVTWGLNGRNERDGEEEEVQVTPEAPKT
KAKKKKTPEEKEAKRRRRQQRAEVEEVVQKVVKDVAAEVVEEENPKEPEEQNPG