; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg026637 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026637
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold6:18217948..18219879
RNA-Seq ExpressionSpg026637
SyntenySpg026637
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]2.9e-2955.47Show/hide
Query:  SIKKKLLKEGYSLPTTRKWLGYKLPEPIHITRRGKAKVADTNHITIEKVDDSKEKESVNQRTSVFRRIRPPVTSGLVFQRLSLNETEEESTQPTNSSTRP
        S +KKLL+EG+S+P +RK LGYK PEPI IT++GK KV D NHITIE+ D++  KE  NQR SVF RIRP V   +VF+RLS+ E E E  Q   S  R 
Subjt:  SIKKKLLKEGYSLPTTRKWLGYKLPEPIHITRRGKAKVADTNHITIEKVDDSKEKESVNQRTSVFRRIRPPVTSGLVFQRLSLNETEEESTQPTNSSTRP

Query:  SVFRRLSMLIEEEESTFSTLNVTRPSAFQSCPLGKKR
        SVFRRL+    +EEST   L  TRPSAF+   + KK+
Subjt:  SVFRRLSMLIEEEESTFSTLNVTRPSAFQSCPLGKKR

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]2.3e-1842.14Show/hide
Query:  IEDENEGWTLVVRRKKQKQSYARKESRLFRDSKRKVKSQRKKRKKKTRRSKPVVEESKDFFCPPQPITLAEYFPRRFLDDSQREALETVSCHVVDVVEDD
        IE+++EGW +V  RKK++    ++ESR +++ +R  K+Q+ K+KKKT + K V  E  +F  P + +TLA++ P+ FL D Q E  E V+CH ++  E++
Subjt:  IEDENEGWTLVVRRKKQKQSYARKESRLFRDSKRKVKSQRKKRKKKTRRSKPVVEESKDFFCPPQPITLAEYFPRRFLDDSQREALETVSCHVVDVVEDD

Query:  DVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALM
         +P  S        DLS F+++DLLSLPQE K++LIDAL+
Subjt:  DVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALM

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]2.9e-2955.47Show/hide
Query:  SIKKKLLKEGYSLPTTRKWLGYKLPEPIHITRRGKAKVADTNHITIEKVDDSKEKESVNQRTSVFRRIRPPVTSGLVFQRLSLNETEEESTQPTNSSTRP
        S +KKLL+EG+S+P +RK LGYK PEPI IT++GK KV D NHITIE+ D++  KE  NQR SVF RIRP V   +VF+RLS+ E E E  Q   S  R 
Subjt:  SIKKKLLKEGYSLPTTRKWLGYKLPEPIHITRRGKAKVADTNHITIEKVDDSKEKESVNQRTSVFRRIRPPVTSGLVFQRLSLNETEEESTQPTNSSTRP

Query:  SVFRRLSMLIEEEESTFSTLNVTRPSAFQSCPLGKKR
        SVFRRL+    +EEST   L  TRPSAF+   + KK+
Subjt:  SVFRRLSMLIEEEESTFSTLNVTRPSAFQSCPLGKKR

XP_031737045.1 uncharacterized protein LOC116402134 [Cucumis sativus]6.5e-2954.74Show/hide
Query:  SIKKKLLKEGYSLPTTRKWLGYKLPEPIHITRRGKAKVADTNHITIEKVDDSKEKESVNQRTSVFRRIRPPVTSGLVFQRLSLNETEEESTQPTNSSTRP
        S +KKLL+EG+S+P +RK LGYK PEPI IT++GK KV D NHITIE+ D++  KE  NQR SVF RIRP V   +VF+RLS+ E E E  Q   +  R 
Subjt:  SIKKKLLKEGYSLPTTRKWLGYKLPEPIHITRRGKAKVADTNHITIEKVDDSKEKESVNQRTSVFRRIRPPVTSGLVFQRLSLNETEEESTQPTNSSTRP

Query:  SVFRRLSMLIEEEESTFSTLNVTRPSAFQSCPLGKKR
        SVFRRL+    +EEST   L  TRPSAF+   + KK+
Subjt:  SVFRRLSMLIEEEESTFSTLNVTRPSAFQSCPLGKKR

XP_031737045.1 uncharacterized protein LOC116402134 [Cucumis sativus]4.8e-0842.68Show/hide
Query:  DFFCPPQPITLAEYFPRRFLDDSQREALETVSCHVVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALM
        +F  P + +TLA++ P+ FL   Q E  E V+CH ++  E++ +P  S        DLS F+++DLLSLPQE K++LIDAL+
Subjt:  DFFCPPQPITLAEYFPRRFLDDSQREALETVSCHVVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALM

XP_031737045.1 uncharacterized protein LOC116402134 [Cucumis sativus]6.5e-2954.74Show/hide
Query:  SIKKKLLKEGYSLPTTRKWLGYKLPEPIHITRRGKAKVADTNHITIEKVDDSKEKESVNQRTSVFRRIRPPVTSGLVFQRLSLNETEEESTQPTNSSTRP
        S +KKLL+EG+S+P +RK LGYK PEPI IT++GK KV D NHITIE+ D++  KE  NQR SVF RIRP V   +VF+RLS+ E E E  Q   +  R 
Subjt:  SIKKKLLKEGYSLPTTRKWLGYKLPEPIHITRRGKAKVADTNHITIEKVDDSKEKESVNQRTSVFRRIRPPVTSGLVFQRLSLNETEEESTQPTNSSTRP

Query:  SVFRRLSMLIEEEESTFSTLNVTRPSAFQSCPLGKKR
        SVFRRL+    +EEST   L  TRPSAF+   + KK+
Subjt:  SVFRRLSMLIEEEESTFSTLNVTRPSAFQSCPLGKKR

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]2.3e-1842.14Show/hide
Query:  IEDENEGWTLVVRRKKQKQSYARKESRLFRDSKRKVKSQRKKRKKKTRRSKPVVEESKDFFCPPQPITLAEYFPRRFLDDSQREALETVSCHVVDVVEDD
        IE+++EGW +V  RKK++    ++ESR +++ +R  K+Q+ K+KKKT + K V  E  +F  P + +TLA++ P+ FL D Q E  E V+CH ++  E++
Subjt:  IEDENEGWTLVVRRKKQKQSYARKESRLFRDSKRKVKSQRKKRKKKTRRSKPVVEESKDFFCPPQPITLAEYFPRRFLDDSQREALETVSCHVVDVVEDD

Query:  DVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALM
         +P  S        DLS F+++DLLSLPQE K++LIDAL+
Subjt:  DVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALM

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]6.5e-2954.74Show/hide
Query:  SIKKKLLKEGYSLPTTRKWLGYKLPEPIHITRRGKAKVADTNHITIEKVDDSKEKESVNQRTSVFRRIRPPVTSGLVFQRLSLNETEEESTQPTNSSTRP
        S +KKLL+EG+S+P +RK LGYK PEPI IT++GK KV D NHITIE+ D++  KE  NQR SVF RIRP V   +VF+RLS+ E E E  Q   +  R 
Subjt:  SIKKKLLKEGYSLPTTRKWLGYKLPEPIHITRRGKAKVADTNHITIEKVDDSKEKESVNQRTSVFRRIRPPVTSGLVFQRLSLNETEEESTQPTNSSTRP

Query:  SVFRRLSMLIEEEESTFSTLNVTRPSAFQSCPLGKKR
        SVFRRL+    +EEST   L  TRPSAF+   + KK+
Subjt:  SVFRRLSMLIEEEESTFSTLNVTRPSAFQSCPLGKKR

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]2.3e-1842.14Show/hide
Query:  IEDENEGWTLVVRRKKQKQSYARKESRLFRDSKRKVKSQRKKRKKKTRRSKPVVEESKDFFCPPQPITLAEYFPRRFLDDSQREALETVSCHVVDVVEDD
        IE+++EGW +V  RKK++    ++ESR +++ +R  K+Q+ K+KKKT + K V  E  +F  P + +TLA++ P+ FL D Q E  E V+CH ++  E++
Subjt:  IEDENEGWTLVVRRKKQKQSYARKESRLFRDSKRKVKSQRKKRKKKTRRSKPVVEESKDFFCPPQPITLAEYFPRRFLDDSQREALETVSCHVVDVVEDD

Query:  DVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALM
         +P  S        DLS F+++DLLSLPQE K++LIDAL+
Subjt:  DVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALM

TrEMBL top hitse value%identityAlignment
A0A5A7TJZ7 Retrotransposon gag protein1.7e-2750.36Show/hide
Query:  SIKKKLLKEGYSLPTTRKWLGYKLPEPIHITRRGKAKVADTNHITIEKVDDSKEKESVNQRTSVFRRIRPPVTSGLVFQRLSLNETEEESTQPTNSSTRP
        S +KKLL+EG+++P +RK LGYK PEPI ITR+GK KV D NHIT+++VD  KEKE   QRTS F RI P V    VF+RLS+ E E +  Q T++  R 
Subjt:  SIKKKLLKEGYSLPTTRKWLGYKLPEPIHITRRGKAKVADTNHITIEKVDDSKEKESVNQRTSVFRRIRPPVTSGLVFQRLSLNETEEESTQPTNSSTRP

Query:  SVFRRLSMLIEEEESTFSTLNVTRPSAFQSCPLGKKR
        S F+RL+M  ++E+        TRPSAF+   + KK+
Subjt:  SVFRRLSMLIEEEESTFSTLNVTRPSAFQSCPLGKKR

A0A5A7TJZ7 Retrotransposon gag protein1.9e-1034.13Show/hide
Query:  SQEKYDSIEDENEGWTLVVRRKKQKQSYARKESRLFRDSKRKVKSQRKKRKKKTRRSKPVVEESKDFFCPPQPITLAEYFPRRFLDDSQREALETVSCHV
        S+EK  SIE+++EGW +V RRKK+K +  +KESR +R+ +R  K+++ K+KKKT++ K                                E L  V+CH 
Subjt:  SQEKYDSIEDENEGWTLVVRRKKQKQSYARKESRLFRDSKRKVKSQRKKRKKKTRRSKPVVEESKDFFCPPQPITLAEYFPRRFLDDSQREALETVSCHV

Query:  VDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALMGPGESIKKKLLKEGYSLPTT
        ++  E++ +P  S        DLS F++ DLLSLPQ+ K +LI+AL+    S          S+PTT
Subjt:  VDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALMGPGESIKKKLLKEGYSLPTT

A0A5A7TJZ7 Retrotransposon gag protein1.7e-2751.82Show/hide
Query:  SIKKKLLKEGYSLPTTRKWLGYKLPEPIHITRRGKAKVADTNHITIEKVDDSKEKESVNQRTSVFRRIRPPVTSGLVFQRLSLNETEEESTQPTNSSTRP
        S +KKLL+EG+ +P +RK LGYK  E I ITR+GK KV D NHITIE+VD  +EKE  +QRT+ F RIRP V+ G VF+RLS+ ET+ +  Q T++  R 
Subjt:  SIKKKLLKEGYSLPTTRKWLGYKLPEPIHITRRGKAKVADTNHITIEKVDDSKEKESVNQRTSVFRRIRPPVTSGLVFQRLSLNETEEESTQPTNSSTRP

Query:  SVFRRLSMLIEEEESTFSTLNVTRPSAFQSCPLGKKR
        SVF+RL+ + E+E+ST      TR SAF+   + KK+
Subjt:  SVFRRLSMLIEEEESTFSTLNVTRPSAFQSCPLGKKR

A0A5A7UMY2 Reverse transcriptase domain-containing protein2.2e-2749.64Show/hide
Query:  SIKKKLLKEGYSLPTTRKWLGYKLPEPIHITRRGKAKVADTNHITIEKVDDSKEKESVNQRTSVFRRIRPPVTSGLVFQRLSLNETEEESTQPTNSSTRP
        S +KKLL+EG+ +P +RK LGYK PEPI ITR+GK KV D NHIT+++VD  +EKE  NQRTS F RI P V    VF+RLS+ E + +  Q T++  R 
Subjt:  SIKKKLLKEGYSLPTTRKWLGYKLPEPIHITRRGKAKVADTNHITIEKVDDSKEKESVNQRTSVFRRIRPPVTSGLVFQRLSLNETEEESTQPTNSSTRP

Query:  SVFRRLSMLIEEEESTFSTLNVTRPSAFQSCPLGKKR
        S F+RL++  +EE+    T   T+PSAF+   + KK+
Subjt:  SVFRRLSMLIEEEESTFSTLNVTRPSAFQSCPLGKKR

A0A5D3BSG5 Uncharacterized protein1.5e-2649.64Show/hide
Query:  SIKKKLLKEGYSLPTTRKWLGYKLPEPIHITRRGKAKVADTNHITIEKVDDSKEKESVNQRTSVFRRIRPPVTSGLVFQRLSLNETEEESTQPTNSSTRP
        S +KKLL+EG+ +P +RK LGYK PEPI ITR+GK KV D+NHIT+++VD  +E E  +QRTS F RI P V    VF+RLS+ E E +  Q T++  R 
Subjt:  SIKKKLLKEGYSLPTTRKWLGYKLPEPIHITRRGKAKVADTNHITIEKVDDSKEKESVNQRTSVFRRIRPPVTSGLVFQRLSLNETEEESTQPTNSSTRP

Query:  SVFRRLSMLIEEEESTFSTLNVTRPSAFQSCPLGKKR
        SVF+RL++  +EE+    T   T+PSAF+   + KK+
Subjt:  SVFRRLSMLIEEEESTFSTLNVTRPSAFQSCPLGKKR

A0A5D3BSG5 Uncharacterized protein6.7e-2446.26Show/hide
Query:  SQEKYDSIEDENEGWTLVVRRKKQKQSYARKESRLFRDSKRKVKSQRKKRKKKTRRSKPVVEESKDFFCPPQPITLAEYFPRRFLDDSQREALETVSCHV
        SQEK   IE+++EGWT+V RRKK+K +  +KE R +R+ ++  K+Q+ K+KKKTR+ K + EE KDF    + +TLA++FP RFL D Q E    V CH 
Subjt:  SQEKYDSIEDENEGWTLVVRRKKQKQSYARKESRLFRDSKRKVKSQRKKRKKKTRRSKPVVEESKDFFCPPQPITLAEYFPRRFLDDSQREALETVSCHV

Query:  VDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALM
        ++ +E++++P  S        DLS F++ DLLSLPQE K +LI+AL+
Subjt:  VDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALM

A0A5D3DXC7 Reverse transcriptase domain-containing protein1.7e-2749.64Show/hide
Query:  SIKKKLLKEGYSLPTTRKWLGYKLPEPIHITRRGKAKVADTNHITIEKVDDSKEKESVNQRTSVFRRIRPPVTSGLVFQRLSLNETEEESTQPTNSSTRP
        S +KKLL+EG+ +P +RK LGYK PEPI ITR+GK KV D+NHIT+++VD  +EKE  NQRTS F RI P V    VF+RLS+ E E +  Q T++  + 
Subjt:  SIKKKLLKEGYSLPTTRKWLGYKLPEPIHITRRGKAKVADTNHITIEKVDDSKEKESVNQRTSVFRRIRPPVTSGLVFQRLSLNETEEESTQPTNSSTRP

Query:  SVFRRLSMLIEEEESTFSTLNVTRPSAFQSCPLGKKR
        S F+RL++  +EE+    T   T+PSAF+   + KK+
Subjt:  SVFRRLSMLIEEEESTFSTLNVTRPSAFQSCPLGKKR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGGATCCCAAGAAAAATATGATTCCATCGAAGATGAGAACGAAGGTTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCAAGGAAAGAGTCCCG
CCTATTTCGAGATAGTAAAAGAAAAGTTAAGTCTCAAAGGAAGAAAAGAAAAAAGAAGACAAGGAGGTCAAAGCCTGTCGTGGAGGAAAGTAAAGATTTCTTTTGCCCTC
CACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAAGAGAGGCACTTGAAACTGTCTCGTGTCACGTTGTGGACGTGGTGGAAGACGAC
GATGTTCCTGCTAGCTCCTCGGGAACGGTGGCAGGTCCAGGAGACTTATCCTCCTTCAGCATAAAAGACTTATTGTCACTTCCTCAGGAAGCTAAAAGTGTCCTTATTGA
TGCATTGATGGGGCCTGGTGAAAGCATAAAGAAGAAGCTTCTAAAGGAAGGTTATAGTCTGCCAACAACGAGAAAATGGCTTGGATATAAGTTGCCAGAGCCAATTCACA
TAACAAGAAGAGGGAAGGCGAAAGTGGCAGACACAAATCATATAACAATAGAGAAGGTTGATGACTCAAAAGAAAAAGAGAGTGTCAACCAACGAACTTCTGTTTTTAGG
CGCATCAGGCCACCAGTTACTAGTGGTTTAGTCTTTCAGAGATTAAGTCTTAATGAAACGGAAGAAGAAAGCACACAACCTACCAATAGCTCCACTCGACCTTCAGTTTT
TCGAAGGTTAAGTATGCTCATTGAGGAAGAAGAGAGTACATTTTCAACTCTGAATGTCACTCGACCTTCAGCTTTTCAAAGTTGCCCATTGGGAAAGAAGAGAGTGCATT
TTCAACTTCGGATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATGGATCCCAAGAAAAATATGATTCCATCGAAGATGAGAACGAAGGTTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCAAGGAAAGAGTCCCG
CCTATTTCGAGATAGTAAAAGAAAAGTTAAGTCTCAAAGGAAGAAAAGAAAAAAGAAGACAAGGAGGTCAAAGCCTGTCGTGGAGGAAAGTAAAGATTTCTTTTGCCCTC
CACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAAGAGAGGCACTTGAAACTGTCTCGTGTCACGTTGTGGACGTGGTGGAAGACGAC
GATGTTCCTGCTAGCTCCTCGGGAACGGTGGCAGGTCCAGGAGACTTATCCTCCTTCAGCATAAAAGACTTATTGTCACTTCCTCAGGAAGCTAAAAGTGTCCTTATTGA
TGCATTGATGGGGCCTGGTGAAAGCATAAAGAAGAAGCTTCTAAAGGAAGGTTATAGTCTGCCAACAACGAGAAAATGGCTTGGATATAAGTTGCCAGAGCCAATTCACA
TAACAAGAAGAGGGAAGGCGAAAGTGGCAGACACAAATCATATAACAATAGAGAAGGTTGATGACTCAAAAGAAAAAGAGAGTGTCAACCAACGAACTTCTGTTTTTAGG
CGCATCAGGCCACCAGTTACTAGTGGTTTAGTCTTTCAGAGATTAAGTCTTAATGAAACGGAAGAAGAAAGCACACAACCTACCAATAGCTCCACTCGACCTTCAGTTTT
TCGAAGGTTAAGTATGCTCATTGAGGAAGAAGAGAGTACATTTTCAACTCTGAATGTCACTCGACCTTCAGCTTTTCAAAGTTGCCCATTGGGAAAGAAGAGAGTGCATT
TTCAACTTCGGATGTGA
Protein sequenceShow/hide protein sequence
MNGSQEKYDSIEDENEGWTLVVRRKKQKQSYARKESRLFRDSKRKVKSQRKKRKKKTRRSKPVVEESKDFFCPPQPITLAEYFPRRFLDDSQREALETVSCHVVDVVEDD
DVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALMGPGESIKKKLLKEGYSLPTTRKWLGYKLPEPIHITRRGKAKVADTNHITIEKVDDSKEKESVNQRTSVFR
RIRPPVTSGLVFQRLSLNETEEESTQPTNSSTRPSVFRRLSMLIEEEESTFSTLNVTRPSAFQSCPLGKKRVHFQLRM