CuGenDBv2

Gene ID	Spg026665
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Transposon Ty3-I Gag-Pol polyprotein
Genome location	scaffold6:15998625..16006327
RNA-Seq Expression	Spg026665
Synteny	Spg026665
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0008233 - peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0051909.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]

1.3e-29

83.53

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Query:  MDSINNPLHVPEGPITKSKAKKIQEAFTLHVQKLVNAQQEAKNFESKLLYNVSSASQEENGVKMAREKLCSLEDGTGDENSVQNL
        +DS+NN LHVPEGPITK KAKKIQEAFTLHVQKL NAQ+E KNFE K LYNVSSASQEE+GVKMAREKLC+ EDGTG+E SVQNL
Subjt:  MDSINNPLHVPEGPITKSKAKKIQEAFTLHVQKLVNAQQEAKNFESKLLYNVSSASQEENGVKMAREKLCSLEDGTGDENSVQNL

KAA0067206.1 hypothetical protein E6C27_scaffold418G00080 [Cucumis melo var. makuwa]

4.8e-29

84.71

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Query:  MDSINNPLHVPEGPITKSKAKKIQEAFTLHVQKLVNAQQEAKNFESKLLYNVSSASQEENGVKMAREKLCSLEDGTGDENSVQNL
        +DSINN LHVPEGPITK KAKKIQEAFTLHVQKL NAQ+E KNFE K LYNVSSASQEE+ +KMA EKLCSLEDGTGDE SVQNL
Subjt:  MDSINNPLHVPEGPITKSKAKKIQEAFTLHVQKLVNAQQEAKNFESKLLYNVSSASQEENGVKMAREKLCSLEDGTGDENSVQNL

TYK02449.1 F15O4.13 [Cucumis melo var. makuwa]

3.7e-29

83.53

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Query:  MDSINNPLHVPEGPITKSKAKKIQEAFTLHVQKLVNAQQEAKNFESKLLYNVSSASQEENGVKMAREKLCSLEDGTGDENSVQNL
        +DS+NN LHVPEGPITK KAKKIQEAFTLHVQKL NAQ+E KNFE K LYNVSSASQEE+GVKMAREKLC+LEDGT +E SVQNL
Subjt:  MDSINNPLHVPEGPITKSKAKKIQEAFTLHVQKLVNAQQEAKNFESKLLYNVSSASQEENGVKMAREKLCSLEDGTGDENSVQNL

TYK08102.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]

8.2e-29

74.74

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Query:  MDSINNPLHVPEGPITKSKAKKIQEAFTLHVQKLVNAQQEAKNFESKLLYNVSSASQEENGVKMAREKLCSLEDGTGDENS---VQNLFDVQPIH
        +DS+NN LHVPEGPITK KAKKIQEAFTLHVQKL NAQ+E KNFE K LYNVSSASQEE+GVKMAREKLC+LEDGTG+E     + + FD++ IH
Subjt:  MDSINNPLHVPEGPITKSKAKKIQEAFTLHVQKLVNAQQEAKNFESKLLYNVSSASQEENGVKMAREKLCSLEDGTGDENS---VQNLFDVQPIH

TYK26105.1 F15O4.13 [Cucumis melo var. makuwa]

3.7e-29

83.53

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Query:  MDSINNPLHVPEGPITKSKAKKIQEAFTLHVQKLVNAQQEAKNFESKLLYNVSSASQEENGVKMAREKLCSLEDGTGDENSVQNL
        +DS+NN LHVPEGPITK KAKKIQEAFTLHVQKL NAQ+E KNFE K LYNVSSASQEE+ VKMAREKLC+LEDGTG+E SVQNL
Subjt:  MDSINNPLHVPEGPITKSKAKKIQEAFTLHVQKLVNAQQEAKNFESKLLYNVSSASQEENGVKMAREKLCSLEDGTGDENSVQNL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UEI2 Transposon Ty3-I Gag-Pol polyprotein

6.1e-30

83.53

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Query:  MDSINNPLHVPEGPITKSKAKKIQEAFTLHVQKLVNAQQEAKNFESKLLYNVSSASQEENGVKMAREKLCSLEDGTGDENSVQNL
        +DS+NN LHVPEGPITK KAKKIQEAFTLHVQKL NAQ+E KNFE K LYNVSSASQEE+GVKMAREKLC+ EDGTG+E SVQNL
Subjt:  MDSINNPLHVPEGPITKSKAKKIQEAFTLHVQKLVNAQQEAKNFESKLLYNVSSASQEENGVKMAREKLCSLEDGTGDENSVQNL

A0A5A7VL78 RT_RNaseH_2 domain-containing protein

2.3e-29

84.71

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Query:  MDSINNPLHVPEGPITKSKAKKIQEAFTLHVQKLVNAQQEAKNFESKLLYNVSSASQEENGVKMAREKLCSLEDGTGDENSVQNL
        +DSINN LHVPEGPITK KAKKIQEAFTLHVQKL NAQ+E KNFE K LYNVSSASQEE+ +KMA EKLCSLEDGTGDE SVQNL
Subjt:  MDSINNPLHVPEGPITKSKAKKIQEAFTLHVQKLVNAQQEAKNFESKLLYNVSSASQEENGVKMAREKLCSLEDGTGDENSVQNL

A0A5D3BWE8 F15O4.13

1.8e-29

83.53

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Query:  MDSINNPLHVPEGPITKSKAKKIQEAFTLHVQKLVNAQQEAKNFESKLLYNVSSASQEENGVKMAREKLCSLEDGTGDENSVQNL
        +DS+NN LHVPEGPITK KAKKIQEAFTLHVQKL NAQ+E KNFE K LYNVSSASQEE+GVKMAREKLC+LEDGT +E SVQNL
Subjt:  MDSINNPLHVPEGPITKSKAKKIQEAFTLHVQKLVNAQQEAKNFESKLLYNVSSASQEENGVKMAREKLCSLEDGTGDENSVQNL

A0A5D3C9X5 Transposon Ty3-I Gag-Pol polyprotein

4.0e-29

74.74

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Query:  MDSINNPLHVPEGPITKSKAKKIQEAFTLHVQKLVNAQQEAKNFESKLLYNVSSASQEENGVKMAREKLCSLEDGTGDENS---VQNLFDVQPIH
        +DS+NN LHVPEGPITK KAKKIQEAFTLHVQKL NAQ+E KNFE K LYNVSSASQEE+GVKMAREKLC+LEDGTG+E     + + FD++ IH
Subjt:  MDSINNPLHVPEGPITKSKAKKIQEAFTLHVQKLVNAQQEAKNFESKLLYNVSSASQEENGVKMAREKLCSLEDGTGDENS---VQNLFDVQPIH

A0A5D3DRJ1 F15O4.13

1.8e-29

83.53

Show/hide

Query:  MDSINNPLHVPEGPITKSKAKKIQEAFTLHVQKLVNAQQEAKNFESKLLYNVSSASQEENGVKMAREKLCSLEDGTGDENSVQNL
        +DS+NN LHVPEGPITK KAKKIQEAFTLHVQKL NAQ+E KNFE K LYNVSSASQEE+ VKMAREKLC+LEDGTG+E SVQNL
Subjt:  MDSINNPLHVPEGPITKSKAKKIQEAFTLHVQKLVNAQQEAKNFESKLLYNVSSASQEENGVKMAREKLCSLEDGTGDENSVQNL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGATTCAATCAATAATCCATTGCATGTACCTGAAGGACCAATCACAAAGAGCAAGGCAAAGAAGATACAAGAGGCTTTCACATTGCATGTTCAAAAGCTAGTAAATGC
ACAGCAAGAGGCAAAGAATTTTGAATCCAAACTTTTGTATAATGTTAGTTCAGCAAGTCAAGAAGAGAATGGAGTCAAGATGGCACGGGAAAAGTTGTGTAGTTTGGAAG
ATGGCACGGGGGACGAAAACAGTGTGCAGAATTTGTTTGATGTTCAACCGATTCATTGGATTAGTTTTGATCAATCTAATTCTGGAAGCCTTGGTCAACATCCTTTGGCT
GACTCTAGAGAGGAAGTTCCAGAAGTGATAGATCCAAATGTTGCTATTCTTCAAGCAATTCAAGGTATGTTGGAATTGATGAGGGAAGATAGGCAAGAAAGGAGGGCACA
ACAACAAAGGGAAGTATGGCCATTCCAAGAAGATGAAGGAATGTTTGACTTAGATGCACATGAAAGACAACTTGGAGGTAGAGGAAATATCAAGAACACTTACCGGATTT
CGAAGAACACTGCACAATGCTCCAAGGATCTCGTTCTTGATCTCCAAATGGACACCACCACGCAAGAGCACCCGCTATTCTCTTGGGATATCTTGAGATTGGTTTGTGGG
AACCAAAATTCGGTCTTGGAAGGGAATTTTCAGCAAGGTGGACCTAATGGACCTACGGATCAGAAGCTCCAACGATACGAGATTGATCAGCTAAACTCATTAACCGAGGT
CCAACCTCTAAACAAGAGTTCCTCTCGGGCCAGGAGAGGACGGCGCGCCTTTGTTCAAGACCCGGAATCAGCCCTTAAGGGAACACACATCTACTTGCCCCAATAG

mRNA sequence

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Protein sequence

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MDSINNPLHVPEGPITKSKAKKIQEAFTLHVQKLVNAQQEAKNFESKLLYNVSSASQEENGVKMAREKLCSLEDGTGDENSVQNLFDVQPIHWISFDQSNSGSLGQHPLA
DSREEVPEVIDPNVAILQAIQGMLELMREDRQERRAQQQREVWPFQEDEGMFDLDAHERQLGGRGNIKNTYRISKNTAQCSKDLVLDLQMDTTTQEHPLFSWDILRLVCG
NQNSVLEGNFQQGGPNGPTDQKLQRYEIDQLNSLTEVQPLNKSSSRARRGRRAFVQDPESALKGTHIYLPQ

Spg026665 (gene) of Sponge gourd (cylindrica) v1 genome