; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg026695 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026695
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTranscription initiation factor IIE subunit alpha
Genome locationscaffold6:19279211..19291036
RNA-Seq ExpressionSpg026695
SyntenySpg026695
Gene Ontology termsGO:0001113 - transcriptional open complex formation at RNA polymerase II promoter (biological process)
GO:0005673 - transcription factor TFIIE complex (cellular component)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR006564 - Zinc finger, PMZ-type
IPR007527 - Zinc finger, SWIM-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK09853.1 uncharacterized protein E5676_scaffold39G00210 [Cucumis melo var. makuwa]5.8e-2237.66Show/hide
Query:  EKTLNELRGSPEESYAQISAFADRLFIRGALVLKDVEIYPVDRVQFQVHDKYKQFEVNIINQSCTCRMWDLDLIPCAHACIAIFRNGLSIDTFVHELYHN
        +K   E R      Y Q+S +A+ +        + + IYPVD+ +F+VH + +QF VNI+N++C+CR WDLDLIPC+HACIA+    L++  +  + Y+ 
Subjt:  EKTLNELRGSPEESYAQISAFADRLFIRGALVLKDVEIYPVDRVQFQVHDKYKQFEVNIINQSCTCRMWDLDLIPCAHACIAIFRNGLSIDTFVHELYHN

Query:  SNLQKMYSASVHPIGSMRH-DSVSSTAEVTVHPPNSKRAGGRPKKKRIMHHSER
        SNL  +Y     PIG++    +        + PP  KR  GRPKKKR     E+
Subjt:  SNLQKMYSASVHPIGSMRH-DSVSSTAEVTVHPPNSKRAGGRPKKKRIMHHSER

XP_022134956.1 general transcription factor IIE subunit 1 [Momordica charantia]9.9e-2277.78Show/hide
Query:  RYTALDPLRLISLEDDYFHCENCNGELVAESNKLVAAQGVNGDDNARKRQHEKLKDVLQKMEVLIRKLQTKI
        RYTALD LRLISLED+YFHCENCNGELVAES+KL AAQG +GDDNARKR+HEKLKD+LQKMEV ++ L  ++
Subjt:  RYTALDPLRLISLEDDYFHCENCNGELVAESNKLVAAQGVNGDDNARKRQHEKLKDVLQKMEVLIRKLQTKI

XP_022922068.1 general transcription factor IIE subunit 1-like [Cucurbita moschata]9.9e-2277.78Show/hide
Query:  RYTALDPLRLISLEDDYFHCENCNGELVAESNKLVAAQGVNGDDNARKRQHEKLKDVLQKMEVLIRKLQTKI
        RYTALD LRLISLED+YFHCENCNGELVAES+KL AAQG +GDDNARKR+HEKLKD+LQKMEV ++ L  ++
Subjt:  RYTALDPLRLISLEDDYFHCENCNGELVAESNKLVAAQGVNGDDNARKRQHEKLKDVLQKMEVLIRKLQTKI

XP_023515738.1 general transcription factor IIE subunit 1-like [Cucurbita pepo subsp. pepo]9.9e-2277.78Show/hide
Query:  RYTALDPLRLISLEDDYFHCENCNGELVAESNKLVAAQGVNGDDNARKRQHEKLKDVLQKMEVLIRKLQTKI
        RYTALD LRLISLED+YFHCENCNGELVAES+KL AAQG +GDDNARKR+HEKLKD+LQKMEV ++ L  ++
Subjt:  RYTALDPLRLISLEDDYFHCENCNGELVAESNKLVAAQGVNGDDNARKRQHEKLKDVLQKMEVLIRKLQTKI

XP_038885920.1 uncharacterized protein LOC120076228 [Benincasa hispida]5.8e-2240.15Show/hide
Query:  YAQISAFADRLFIRGALVLKDVEIYPVDRVQFQVHDKYKQFEVNIINQSCTCRMWDLDLIPCAHACIAIFRNGLSIDTFVHELYHNSNLQKMYSASVHPI
        Y+++S  A+ +        + +++YP+++ +F+VHD+  QF VNI+N++ +CR WDLD+IPC+HACIA+ R  L + ++VH+ Y  SNL+ +Y      I
Subjt:  YAQISAFADRLFIRGALVLKDVEIYPVDRVQFQVHDKYKQFEVNIINQSCTCRMWDLDLIPCAHACIAIFRNGLSIDTFVHELYHNSNLQKMYSASVHPI

Query:  GSMRHDSVSS-TAEVTVHPPNSKRAGGRPKKK
        G+++  + S       V PPN KR  GRPKKK
Subjt:  GSMRHDSVSS-TAEVTVHPPNSKRAGGRPKKK

TrEMBL top hitse value%identityAlignment
A0A5A7U1T3 Uncharacterized protein6.3e-2237.66Show/hide
Query:  EKTLNELRGSPEESYAQISAFADRLFIRGALVLKDVEIYPVDRVQFQVHDKYKQFEVNIINQSCTCRMWDLDLIPCAHACIAIFRNGLSIDTFVHELYHN
        +K   E R      Y Q+S +A+ +        + + IYPVD+ +F+VH   +QF VNI+N++C+CR WDLDLIPC+HACIA+    L++  + ++ Y+ 
Subjt:  EKTLNELRGSPEESYAQISAFADRLFIRGALVLKDVEIYPVDRVQFQVHDKYKQFEVNIINQSCTCRMWDLDLIPCAHACIAIFRNGLSIDTFVHELYHN

Query:  SNLQKMYSASVHPIGSMRH-DSVSSTAEVTVHPPNSKRAGGRPKKKRIMHHSER
        SNL  +Y     PIG++    +        + PP  KR  GRPKKKR     E+
Subjt:  SNLQKMYSASVHPIGSMRH-DSVSSTAEVTVHPPNSKRAGGRPKKKRIMHHSER

A0A5D3CDB8 Uncharacterized protein2.8e-2237.66Show/hide
Query:  EKTLNELRGSPEESYAQISAFADRLFIRGALVLKDVEIYPVDRVQFQVHDKYKQFEVNIINQSCTCRMWDLDLIPCAHACIAIFRNGLSIDTFVHELYHN
        +K   E R      Y Q+S +A+ +        + + IYPVD+ +F+VH + +QF VNI+N++C+CR WDLDLIPC+HACIA+    L++  +  + Y+ 
Subjt:  EKTLNELRGSPEESYAQISAFADRLFIRGALVLKDVEIYPVDRVQFQVHDKYKQFEVNIINQSCTCRMWDLDLIPCAHACIAIFRNGLSIDTFVHELYHN

Query:  SNLQKMYSASVHPIGSMRH-DSVSSTAEVTVHPPNSKRAGGRPKKKRIMHHSER
        SNL  +Y     PIG++    +        + PP  KR  GRPKKKR     E+
Subjt:  SNLQKMYSASVHPIGSMRH-DSVSSTAEVTVHPPNSKRAGGRPKKKRIMHHSER

A0A6J1BZ86 Transcription initiation factor IIE subunit alpha4.8e-2277.78Show/hide
Query:  RYTALDPLRLISLEDDYFHCENCNGELVAESNKLVAAQGVNGDDNARKRQHEKLKDVLQKMEVLIRKLQTKI
        RYTALD LRLISLED+YFHCENCNGELVAES+KL AAQG +GDDNARKR+HEKLKD+LQKMEV ++ L  ++
Subjt:  RYTALDPLRLISLEDDYFHCENCNGELVAESNKLVAAQGVNGDDNARKRQHEKLKDVLQKMEVLIRKLQTKI

A0A6J1E5J2 Transcription initiation factor IIE subunit alpha4.8e-2277.78Show/hide
Query:  RYTALDPLRLISLEDDYFHCENCNGELVAESNKLVAAQGVNGDDNARKRQHEKLKDVLQKMEVLIRKLQTKI
        RYTALD LRLISLED+YFHCENCNGELVAES+KL AAQG +GDDNARKR+HEKLKD+LQKMEV ++ L  ++
Subjt:  RYTALDPLRLISLEDDYFHCENCNGELVAESNKLVAAQGVNGDDNARKRQHEKLKDVLQKMEVLIRKLQTKI

A0A6J1JA07 Transcription initiation factor IIE subunit alpha4.8e-2277.78Show/hide
Query:  RYTALDPLRLISLEDDYFHCENCNGELVAESNKLVAAQGVNGDDNARKRQHEKLKDVLQKMEVLIRKLQTKI
        RYTALD LRLISLED+YFHCENCNGELVAES+KL AAQG +GDDNARKR+HEKLKD+LQKMEV ++ L  ++
Subjt:  RYTALDPLRLISLEDDYFHCENCNGELVAESNKLVAAQGVNGDDNARKRQHEKLKDVLQKMEVLIRKLQTKI

SwissProt top hitse value%identityAlignment
Q9LMG8 Putative SNAP25 homologous protein SNAP301.5e-0475Show/hide
Query:  EKVKQDDALSDMSDILVELKEMAVDMGCEIDR
        EK KQDD LSD+SDIL +LK MAVDMG EID+
Subjt:  EKVKQDDALSDMSDILVELKEMAVDMGCEIDR

Q9S7P9 SNAP25 homologous protein SNAP331.9e-0472.73Show/hide
Query:  VEKVKQDDALSDMSDILVELKEMAVDMGCEIDR
        +EK KQDD LSD+SDIL ELK MAVDMG EI++
Subjt:  VEKVKQDDALSDMSDILVELKEMAVDMGCEIDR

Arabidopsis top hitse value%identityAlignment
AT1G03280.1 Transcription factor TFIIE, alpha subunit1.4e-1858.9Show/hide
Query:  RYTALDPLRLISLEDDYFHCENCNGELVAESNKLVAAQGVNGDDNARKRQHEKLKDVLQKMEVLIRKLQTKID
        +Y ALD LRLIS+ DD FHCENCNGELV E NKL + + V+GDDNAR+R+ E LK++LQK+EV ++ L  +++
Subjt:  RYTALDPLRLISLEDDYFHCENCNGELVAESNKLVAAQGVNGDDNARKRQHEKLKDVLQKMEVLIRKLQTKID

AT1G13890.1 soluble N-ethylmaleimide-sensitive factor adaptor protein 301.1e-0575Show/hide
Query:  EKVKQDDALSDMSDILVELKEMAVDMGCEIDR
        EK KQDD LSD+SDIL +LK MAVDMG EID+
Subjt:  EKVKQDDALSDMSDILVELKEMAVDMGCEIDR

AT4G20340.1 Transcription factor TFIIE, alpha subunit5.1e-1657.53Show/hide
Query:  RYTALDPLRLISLEDDYFHCENCNGELVAESNKLVAAQGVNGDDNARKRQHEKLKDVLQKMEVLIRKLQTKID
        +Y ALD LRLIS+EDD FHCENCNGELV E NKL++ + V+  DNAR+RQ EK+K  LQ +E  ++ L   I+
Subjt:  RYTALDPLRLISLEDDYFHCENCNGELVAESNKLVAAQGVNGDDNARKRQHEKLKDVLQKMEVLIRKLQTKID

AT4G20810.1 transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family protein3.0e-0853.45Show/hide
Query:  YFHCENCNGELVAESNKLVAAQ-GVNGDDNARKRQHEKLKDVLQKMEVLIRKLQTKID
        +FHCENCNGELV E NKL + +  V+G DN R R+ + LKD+LQ MEV ++ L   I+
Subjt:  YFHCENCNGELVAESNKLVAAQ-GVNGDDNARKRQHEKLKDVLQKMEVLIRKLQTKID

AT5G61210.1 soluble N-ethylmaleimide-sensitive factor adaptor protein 331.4e-0572.73Show/hide
Query:  VEKVKQDDALSDMSDILVELKEMAVDMGCEIDR
        +EK KQDD LSD+SDIL ELK MAVDMG EI++
Subjt:  VEKVKQDDALSDMSDILVELKEMAVDMGCEIDR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGCACCTCGACTAATCTCACGGGACAACCGGCTGATCCTACTACATTTGGAACTCGATCACACTCGTTATTGGCTTCTTTAGCTGGAAGCAAGCTTGAAAAAGTTAT
GACATTGATTAGGTACACTGCTTTGGATCCTCTGCGATTAATCTCTCTTGAGGATGATTACTTCCATTGTGAAAATTGCAATGGAGAGCTGGTTGCAGAGAGTAATAAAC
TTGTTGCTGCTCAAGGAGTGAATGGAGATGATAATGCCAGGAAGCGTCAACATGAAAAATTAAAGGACGTGCTTCAGAAGATGGAAGTTTTGATACGGAAGTTGCAGACT
AAAATTGATCCAAGGCCCTTGTTGAAAGAGGACAAGTTACCTCTCTCGGTAAGAATGGTCTTGGATTACCTTTCTTCTGGGGTAGAAAAGGTGAAGCAAGATGATGCACT
ATCTGACATGAGTGATATCTTGGTAGAGCTAAAGGAAATGGCTGTTGACATGGGTTGTGAAATTGACAGAACCATGCTCTGGATCGCGCTTCTTGATGATGTTAAAAGAA
AAGTTGTAGAAGCTGAAAAGGTTCTTCGAGTTGTTGGACATATGTTTGTTATGTTGACAAATGAAGAAAATATTGTTGGAGTTCCTCTCGGGCTAGGAGAGGACGGCGCG
CCTTTGTTCAAGCCCCGAAATCAGCCCTTAAGGGAACACACGTCTACTTACCCCAATAGGGGAAGGAGTGAATTTCATCTTGTACTGTTATGTTCCCAGCCCTCATTCGG
TGTTGCCCCTGAAATGGATACCCCCACTCGCATGTCAAGTACACGAACGCGTTGGATCATTGCGTTTGATCATAATACAAAGCGGGTCGTATCCATAGTTTGTTCTTTTG
ATGACGTTCAGAATGATCACAAACAAGTGACTACGAGTGTTGCGTGTGAGTATGCAAAGACTATAATGAGGATCACTAACAGGATGCATTGTACACCTCAGGAGATAATA
GAGTATGCTAGGAAAACACACGGGATCAATATTAGTTATGATAAAGCATGGAGGGGTAGAGAAAAGACGCTAAATGAGTTGAGAGGATCTCCTGAAGAGTCTTATGCGCA
AATTTCAGCGTTTGCAGATAGGTTGTTCATTAGAGGAGCACTGGTACTTAAGGATGTAGAGATATACCCCGTTGATCGAGTGCAATTCCAAGTTCATGATAAATACAAGC
AATTCGAAGTAAATATCATCAACCAGAGTTGCACGTGCAGGATGTGGGATCTAGATCTTATCCCATGTGCCCATGCATGCATAGCTATTTTCCGCAACGGGTTGAGCATC
GATACATTTGTTCATGAGCTTTACCATAACTCAAACCTCCAAAAGATGTATAGTGCAAGCGTGCATCCTATTGGATCGATGAGGCACGATTCTGTCTCATCAACAGCCGA
GGTTACAGTTCACCCGCCCAATTCAAAACGTGCTGGTGGAAGGCCGAAAAAGAAGAGGATTATGCATCATAGTGAGAGAGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGCGCACCTCGACTAATCTCACGGGACAACCGGCTGATCCTACTACATTTGGAACTCGATCACACTCGTTATTGGCTTCTTTAGCTGGAAGCAAGCTTGAAAAAGTTAT
GACATTGATTAGGTACACTGCTTTGGATCCTCTGCGATTAATCTCTCTTGAGGATGATTACTTCCATTGTGAAAATTGCAATGGAGAGCTGGTTGCAGAGAGTAATAAAC
TTGTTGCTGCTCAAGGAGTGAATGGAGATGATAATGCCAGGAAGCGTCAACATGAAAAATTAAAGGACGTGCTTCAGAAGATGGAAGTTTTGATACGGAAGTTGCAGACT
AAAATTGATCCAAGGCCCTTGTTGAAAGAGGACAAGTTACCTCTCTCGGTAAGAATGGTCTTGGATTACCTTTCTTCTGGGGTAGAAAAGGTGAAGCAAGATGATGCACT
ATCTGACATGAGTGATATCTTGGTAGAGCTAAAGGAAATGGCTGTTGACATGGGTTGTGAAATTGACAGAACCATGCTCTGGATCGCGCTTCTTGATGATGTTAAAAGAA
AAGTTGTAGAAGCTGAAAAGGTTCTTCGAGTTGTTGGACATATGTTTGTTATGTTGACAAATGAAGAAAATATTGTTGGAGTTCCTCTCGGGCTAGGAGAGGACGGCGCG
CCTTTGTTCAAGCCCCGAAATCAGCCCTTAAGGGAACACACGTCTACTTACCCCAATAGGGGAAGGAGTGAATTTCATCTTGTACTGTTATGTTCCCAGCCCTCATTCGG
TGTTGCCCCTGAAATGGATACCCCCACTCGCATGTCAAGTACACGAACGCGTTGGATCATTGCGTTTGATCATAATACAAAGCGGGTCGTATCCATAGTTTGTTCTTTTG
ATGACGTTCAGAATGATCACAAACAAGTGACTACGAGTGTTGCGTGTGAGTATGCAAAGACTATAATGAGGATCACTAACAGGATGCATTGTACACCTCAGGAGATAATA
GAGTATGCTAGGAAAACACACGGGATCAATATTAGTTATGATAAAGCATGGAGGGGTAGAGAAAAGACGCTAAATGAGTTGAGAGGATCTCCTGAAGAGTCTTATGCGCA
AATTTCAGCGTTTGCAGATAGGTTGTTCATTAGAGGAGCACTGGTACTTAAGGATGTAGAGATATACCCCGTTGATCGAGTGCAATTCCAAGTTCATGATAAATACAAGC
AATTCGAAGTAAATATCATCAACCAGAGTTGCACGTGCAGGATGTGGGATCTAGATCTTATCCCATGTGCCCATGCATGCATAGCTATTTTCCGCAACGGGTTGAGCATC
GATACATTTGTTCATGAGCTTTACCATAACTCAAACCTCCAAAAGATGTATAGTGCAAGCGTGCATCCTATTGGATCGATGAGGCACGATTCTGTCTCATCAACAGCCGA
GGTTACAGTTCACCCGCCCAATTCAAAACGTGCTGGTGGAAGGCCGAAAAAGAAGAGGATTATGCATCATAGTGAGAGAGGATAG
Protein sequenceShow/hide protein sequence
MRTSTNLTGQPADPTTFGTRSHSLLASLAGSKLEKVMTLIRYTALDPLRLISLEDDYFHCENCNGELVAESNKLVAAQGVNGDDNARKRQHEKLKDVLQKMEVLIRKLQT
KIDPRPLLKEDKLPLSVRMVLDYLSSGVEKVKQDDALSDMSDILVELKEMAVDMGCEIDRTMLWIALLDDVKRKVVEAEKVLRVVGHMFVMLTNEENIVGVPLGLGEDGA
PLFKPRNQPLREHTSTYPNRGRSEFHLVLLCSQPSFGVAPEMDTPTRMSSTRTRWIIAFDHNTKRVVSIVCSFDDVQNDHKQVTTSVACEYAKTIMRITNRMHCTPQEII
EYARKTHGINISYDKAWRGREKTLNELRGSPEESYAQISAFADRLFIRGALVLKDVEIYPVDRVQFQVHDKYKQFEVNIINQSCTCRMWDLDLIPCAHACIAIFRNGLSI
DTFVHELYHNSNLQKMYSASVHPIGSMRHDSVSSTAEVTVHPPNSKRAGGRPKKKRIMHHSERG