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Spg026707 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026707
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold6:19117133..19120086
RNA-Seq ExpressionSpg026707
SyntenySpg026707
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0034061 - DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036957.1 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein [Cucumis melo var. makuwa]2.0e-1540.88Show/hide
Query:  PKEKLFEILLVNGYASIGYAHQDLVHEEYDDNLTCLFHAGAKGHSLEQCHYFHKRVQELVDSKFLVVTCCLLEWETPPLSVDNISGTGGVTRSGKCYAPD
        P E LFE L   GY S  Y   ++ +E YD++  C+FH G  GH ++QC  F  +VQ+L+DSK L V        T PL VDNI+G  G+TRSG+CY PD
Subjt:  PKEKLFEILLVNGYASIGYAHQDLVHEEYDDNLTCLFHAGAKGHSLEQCHYFHKRVQELVDSKFLVVTCCLLEWETPPLSVDNISGTGGVTRSGKCYAPD

Query:  QSLKFGLGYKPDKADTIRVQKREKERRLARFESCEPE
               G        I  Q R+ E+R A+ E C+ +
Subjt:  QSLKFGLGYKPDKADTIRVQKREKERRLARFESCEPE

KAA0036957.1 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein [Cucumis melo var. makuwa]2.0e-0738.46Show/hide
Query:  PDQSLKFGLGYKPDKADTIRVQKREKERRLARFESCEPEYGEKVIPHLYHSFESASIICARD--------------FAVAVVTKEEEMD-PWIYPCPENF
        P    +FGLGYKP   D IR+Q+ +K++RLA+ E  E +   K+IP LY +F+SA I  + D               +VA V +E   +   +Y CP +F
Subjt:  PDQSLKFGLGYKPDKADTIRVQKREKERRLARFESCEPEYGEKVIPHLYHSFESASIICARD--------------FAVAVVTKEEEMD-PWIYPCPENF

Query:  ELNN
        ELNN
Subjt:  ELNN

KAA0036957.1 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein [Cucumis melo var. makuwa]1.7e-1459.21Show/hide
Query:  PKEKLFEILLVNGYASIGYAHQDLVHEEYDDNLTCLFHAGAKGHSLEQCHYFHKRVQELVDSKFLVVTCCLLEWET
        P E+LFE LL +GY S+ Y   +L ++EYD + TC FHAGAKGHSLEQC+ F KRVQEL+DSK L VT   L+  T
Subjt:  PKEKLFEILLVNGYASIGYAHQDLVHEEYDDNLTCLFHAGAKGHSLEQCHYFHKRVQELVDSKFLVVTCCLLEWET

XP_022143495.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]4.0e-1628.46Show/hide
Query:  TPKEKLFEILLVNGYASIGYAHQDLVHEEYDDNLTCLFHAGAKGHSLEQCHYFHKRVQELVDSKFLVV--------------------------------
        TP E+LFEILL +GY S+ Y   +L ++ YD++LTC FHAGAKGH+LEQC+ F   VQEL+DSK L V                                
Subjt:  TPKEKLFEILLVNGYASIGYAHQDLVHEEYDDNLTCLFHAGAKGHSLEQCHYFHKRVQELVDSKFLVV--------------------------------

Query:  --------------------------------TCCLLEWE------------TPPLSVDNISGTGGVTRSGKCYAPDQSLKFGLGYKPDKADTIRVQKRE
                                        +   + W+            +PPL VDNI+G GG+T +G+CY PD  LK         ++T   + +E
Subjt:  --------------------------------TCCLLEWE------------TPPLSVDNISGTGGVTRSGKCYAPDQSLKFGLGYKPDKADTIRVQKRE

Query:  KERRLARFESCEPEYGEKVIPHLYHSFESASIICARDFAVAVVTKEEEMDPWI
        K     + +  E + G+  +    H  E    I  +D +      EEE+  ++
Subjt:  KERRLARFESCEPEYGEKVIPHLYHSFESASIICARDFAVAVVTKEEEMDPWI

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]4.0e-1664.71Show/hide
Query:  TPKEKLFEILLVNGYASIGYAHQDLVHEEYDDNLTCLFHAGAKGHSLEQCHYFHKRVQELVDSKFLVV
        TPKE+LFEILL +GY S+ Y   +L ++EYD++LTC FHAGAKGHSLEQC+ F  +VQEL+DSK L V
Subjt:  TPKEKLFEILLVNGYASIGYAHQDLVHEEYDDNLTCLFHAGAKGHSLEQCHYFHKRVQELVDSKFLVV

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]1.2e-1735.23Show/hide
Query:  TPKEKLFEILLVNGYASIGYAHQDLVHEEYDDNLTCLFHAGAKGHSLEQCHYFHKRVQELVDSKFLVVT--------------------------CCL--
        TP  +LFEILL +GY S+ Y   +L ++ YD++LTC FHAGAKGHSLEQC+ F  +VQEL+DSK L V                            CL  
Subjt:  TPKEKLFEILLVNGYASIGYAHQDLVHEEYDDNLTCLFHAGAKGHSLEQCHYFHKRVQELVDSKFLVVT--------------------------CCL--

Query:  -------------------------------LEWE------------TPPLSVDNISGTGGVTRSGKCYAPDQSLK
                                       + W+            +PPL +DNI+G GG+TR+G+CY PD  LK
Subjt:  -------------------------------LEWE------------TPPLSVDNISGTGGVTRSGKCYAPDQSLK

TrEMBL top hitse value%identityAlignment
A0A5A7T5W6 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein9.5e-1640.88Show/hide
Query:  PKEKLFEILLVNGYASIGYAHQDLVHEEYDDNLTCLFHAGAKGHSLEQCHYFHKRVQELVDSKFLVVTCCLLEWETPPLSVDNISGTGGVTRSGKCYAPD
        P E LFE L   GY S  Y   ++ +E YD++  C+FH G  GH ++QC  F  +VQ+L+DSK L V        T PL VDNI+G  G+TRSG+CY PD
Subjt:  PKEKLFEILLVNGYASIGYAHQDLVHEEYDDNLTCLFHAGAKGHSLEQCHYFHKRVQELVDSKFLVVTCCLLEWETPPLSVDNISGTGGVTRSGKCYAPD

Query:  QSLKFGLGYKPDKADTIRVQKREKERRLARFESCEPE
               G        I  Q R+ E+R A+ E C+ +
Subjt:  QSLKFGLGYKPDKADTIRVQKREKERRLARFESCEPE

A0A5A7T5W6 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein9.6e-0838.46Show/hide
Query:  PDQSLKFGLGYKPDKADTIRVQKREKERRLARFESCEPEYGEKVIPHLYHSFESASIICARD--------------FAVAVVTKEEEMD-PWIYPCPENF
        P    +FGLGYKP   D IR+Q+ +K++RLA+ E  E +   K+IP LY +F+SA I  + D               +VA V +E   +   +Y CP +F
Subjt:  PDQSLKFGLGYKPDKADTIRVQKREKERRLARFESCEPEYGEKVIPHLYHSFESASIICARD--------------FAVAVVTKEEEMD-PWIYPCPENF

Query:  ELNN
        ELNN
Subjt:  ELNN

A0A5A7T5W6 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein8.1e-1559.21Show/hide
Query:  PKEKLFEILLVNGYASIGYAHQDLVHEEYDDNLTCLFHAGAKGHSLEQCHYFHKRVQELVDSKFLVVTCCLLEWET
        P E+LFE LL +GY S+ Y   +L ++EYD + TC FHAGAKGHSLEQC+ F KRVQEL+DSK L VT   L+  T
Subjt:  PKEKLFEILLVNGYASIGYAHQDLVHEEYDDNLTCLFHAGAKGHSLEQCHYFHKRVQELVDSKFLVVTCCLLEWET

A0A6J1CNY7 Ribonuclease H1.9e-1628.46Show/hide
Query:  TPKEKLFEILLVNGYASIGYAHQDLVHEEYDDNLTCLFHAGAKGHSLEQCHYFHKRVQELVDSKFLVV--------------------------------
        TP E+LFEILL +GY S+ Y   +L ++ YD++LTC FHAGAKGH+LEQC+ F   VQEL+DSK L V                                
Subjt:  TPKEKLFEILLVNGYASIGYAHQDLVHEEYDDNLTCLFHAGAKGHSLEQCHYFHKRVQELVDSKFLVV--------------------------------

Query:  --------------------------------TCCLLEWE------------TPPLSVDNISGTGGVTRSGKCYAPDQSLKFGLGYKPDKADTIRVQKRE
                                        +   + W+            +PPL VDNI+G GG+T +G+CY PD  LK         ++T   + +E
Subjt:  --------------------------------TCCLLEWE------------TPPLSVDNISGTGGVTRSGKCYAPDQSLKFGLGYKPDKADTIRVQKRE

Query:  KERRLARFESCEPEYGEKVIPHLYHSFESASIICARDFAVAVVTKEEEMDPWI
        K     + +  E + G+  +    H  E    I  +D +      EEE+  ++
Subjt:  KERRLARFESCEPEYGEKVIPHLYHSFESASIICARDFAVAVVTKEEEMDPWI

A0A6J1DZ90 Ribonuclease H1.9e-1664.71Show/hide
Query:  TPKEKLFEILLVNGYASIGYAHQDLVHEEYDDNLTCLFHAGAKGHSLEQCHYFHKRVQELVDSKFLVV
        TPKE+LFEILL +GY S+ Y   +L ++EYD++LTC FHAGAKGHSLEQC+ F  +VQEL+DSK L V
Subjt:  TPKEKLFEILLVNGYASIGYAHQDLVHEEYDDNLTCLFHAGAKGHSLEQCHYFHKRVQELVDSKFLVV

A0A6J1E2J7 Ribonuclease H6.0e-1835.23Show/hide
Query:  TPKEKLFEILLVNGYASIGYAHQDLVHEEYDDNLTCLFHAGAKGHSLEQCHYFHKRVQELVDSKFLVVT--------------------------CCL--
        TP  +LFEILL +GY S+ Y   +L ++ YD++LTC FHAGAKGHSLEQC+ F  +VQEL+DSK L V                            CL  
Subjt:  TPKEKLFEILLVNGYASIGYAHQDLVHEEYDDNLTCLFHAGAKGHSLEQCHYFHKRVQELVDSKFLVVT--------------------------CCL--

Query:  -------------------------------LEWE------------TPPLSVDNISGTGGVTRSGKCYAPDQSLK
                                       + W+            +PPL +DNI+G GG+TR+G+CY PD  LK
Subjt:  -------------------------------LEWE------------TPPLSVDNISGTGGVTRSGKCYAPDQSLK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTCCCAAGGAGAAGCTTTTTGAGATTCTCCTCGTTAACGGATATGCATCGATCGGGTATGCACATCAGGACCTTGTTCATGAGGAATACGATGATAATCTGACTTG
CCTATTTCATGCTGGGGCAAAGGGTCATTCTTTGGAACAATGTCATTATTTTCATAAGAGGGTCCAAGAACTGGTGGACTCAAAATTTCTTGTGGTTACCTGTTGTCTTC
TAGAGTGGGAAACGCCACCACTTTCAGTTGACAACATTTCTGGAACGGGAGGCGTAACACGGAGTGGGAAATGCTACGCTCCAGATCAGTCATTGAAATTTGGGCTTGGG
TATAAGCCGGATAAAGCAGACACGATCAGGGTACAGAAGCGAGAAAAAGAGAGGCGTTTGGCTAGATTTGAAAGTTGCGAACCAGAATATGGAGAAAAAGTCATTCCTCA
TCTCTACCACTCGTTTGAAAGTGCTAGTATAATTTGTGCAAGAGATTTTGCAGTTGCAGTAGTGACTAAAGAAGAAGAAATGGATCCATGGATCTACCCGTGCCCAGAAA
ACTTCGAGCTCAACAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTCCCAAGGAGAAGCTTTTTGAGATTCTCCTCGTTAACGGATATGCATCGATCGGGTATGCACATCAGGACCTTGTTCATGAGGAATACGATGATAATCTGACTTG
CCTATTTCATGCTGGGGCAAAGGGTCATTCTTTGGAACAATGTCATTATTTTCATAAGAGGGTCCAAGAACTGGTGGACTCAAAATTTCTTGTGGTTACCTGTTGTCTTC
TAGAGTGGGAAACGCCACCACTTTCAGTTGACAACATTTCTGGAACGGGAGGCGTAACACGGAGTGGGAAATGCTACGCTCCAGATCAGTCATTGAAATTTGGGCTTGGG
TATAAGCCGGATAAAGCAGACACGATCAGGGTACAGAAGCGAGAAAAAGAGAGGCGTTTGGCTAGATTTGAAAGTTGCGAACCAGAATATGGAGAAAAAGTCATTCCTCA
TCTCTACCACTCGTTTGAAAGTGCTAGTATAATTTGTGCAAGAGATTTTGCAGTTGCAGTAGTGACTAAAGAAGAAGAAATGGATCCATGGATCTACCCGTGCCCAGAAA
ACTTCGAGCTCAACAACTGA
Protein sequenceShow/hide protein sequence
MTPKEKLFEILLVNGYASIGYAHQDLVHEEYDDNLTCLFHAGAKGHSLEQCHYFHKRVQELVDSKFLVVTCCLLEWETPPLSVDNISGTGGVTRSGKCYAPDQSLKFGLG
YKPDKADTIRVQKREKERRLARFESCEPEYGEKVIPHLYHSFESASIICARDFAVAVVTKEEEMDPWIYPCPENFELNN