; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg026714 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026714
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold6:19756406..19758274
RNA-Seq ExpressionSpg026714
SyntenySpg026714
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039557.1 uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa]6.0e-2445.28Show/hide
Query:  SQEKYDSIEDENEGWTLVVRRKKQKQSYAQKESRLFRDSKRKVKSQRKKGEKKTRRSKPVVKESEDFFYTPQPITLAEYFPRRFLDDSQGETLETVTCHI
        SQEK   IE+++EGWT+V RRKK+K +  QKE R +R+ ++  K+Q+ K +KKTR+ K + +E +DF  T + +TLA++FP RFL D Q E    V CH 
Subjt:  SQEKYDSIEDENEGWTLVVRRKKQKQSYAQKESRLFRDSKRKVKSQRKKGEKKTRRSKPVVKESEDFFYTPQPITLAEYFPRRFLDDSQGETLETVTCHI

Query:  VDVVEDDDVPASFSRTVAGPGV---LSSFSIKDLLSLPQEAKSILINALIESDEPQADA
        ++ +E++++P    R++   GV   LS F++ DLLSLPQE K ILINAL+ S    + A
Subjt:  VDVVEDDDVPASFSRTVAGPGV---LSSFSIKDLLSLPQEAKSILINALIESDEPQADA

KAA0039557.1 uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa]1.1e-2256.48Show/hide
Query:  LKKGYSLPTTRKGLGYKSPEPVRITRRGKAKVTDTNHITVEEVDDSKEKESVDQRTSSFRRIRPPVARALVFKRLSVNETEEESAQPTNSSTRPSVFRRL
        L++G+ +P +RKGLGYKSPEP+RITR+GK KV D+NHITV+EVD  +E E   QRTS+F RI P VAR  VF+RLS+ E E +  Q T++  R SVF+RL
Subjt:  LKKGYSLPTTRKGLGYKSPEPVRITRRGKAKVTDTNHITVEEVDDSKEKESVDQRTSSFRRIRPPVARALVFKRLSVNETEEESAQPTNSSTRPSVFRRL

Query:  SMPIGEEE
        ++   EE+
Subjt:  SMPIGEEE

KAA0039557.1 uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa]1.0e-2358.04Show/hide
Query:  LKKGYSLPTTRKGLGYKSPEPVRITRRGKAKVTDTNHITVEEVDDSKEKESVDQRTSSFRRIRPPVARALVFKRLSVNETEEESAQPTNSSTRPSVFRRL
        L++G+S+P +RKGLGYKSPEP+RIT++GK KV D NHIT+EE D++  KE  +QR S F RIRP VAR +VF+RLS+ E E E  Q   S  R SVFRRL
Subjt:  LKKGYSLPTTRKGLGYKSPEPVRITRRGKAKVTDTNHITVEEVDDSKEKESVDQRTSSFRRIRPPVARALVFKRLSVNETEEESAQPTNSSTRPSVFRRL

Query:  -SMPIGEEESTH
         + PI EE + H
Subjt:  -SMPIGEEESTH

KAA0056780.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.6e-2447.68Show/hide
Query:  QEKYDSIEDENEGWTLVVRRKKQKQSYAQKESRLFRDSKRKVKSQRKKGEKKTRRSKPVVKESEDFFYTPQPITLAEYFPRRFLDDSQGETLETVTCHIV
        QEK  SIE ++EGWT+V RRKK+K +  QKE R +R+ +R  K+Q+ K +KKT++ K + +E +DF  T + +TLA +FP RFL D Q E  E V CH +
Subjt:  QEKYDSIEDENEGWTLVVRRKKQKQSYAQKESRLFRDSKRKVKSQRKKGEKKTRRSKPVVKESEDFFYTPQPITLAEYFPRRFLDDSQGETLETVTCHIV

Query:  DVVEDDDVPASFSRTVAGPGV---LSSFSIKDLLSLPQEAKSILINALIES
        D +E++ +P    R++   GV   L  F++ DLLSLPQE K+ILINAL+ S
Subjt:  DVVEDDDVPASFSRTVAGPGV---LSSFSIKDLLSLPQEAKSILINALIES

TYK05005.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.7e-2425.87Show/hide
Query:  SQEKYDSIEDENEGWTLVVRRKKQKQSYAQKESRLFRDSKRKVKSQRKKGEKKTRRSKPVVKESEDFFYTPQPITLAEYFPRRFLDDSQGETLETVTCHI
        SQEK   IE+++E WT+V RRKK+K +  QKE R +R+ +R  K+Q+ K +KKTR+ K + KE +DF  T + ITLA++FP RFL D Q E    V CH 
Subjt:  SQEKYDSIEDENEGWTLVVRRKKQKQSYAQKESRLFRDSKRKVKSQRKKGEKKTRRSKPVVKESEDFFYTPQPITLAEYFPRRFLDDSQGETLETVTCHI

Query:  VDVVEDDDVPASFSRTVAGPGVLSSFSIKDLLSLPQEAKSILINALI-----------------------------------------------------
        ++  E++ +P            LS F++ DLLSLPQE K+ILINAL+                                                     
Subjt:  VDVVEDDDVPASFSRTVAGPGVLSSFSIKDLLSLPQEAKSILINALI-----------------------------------------------------

Query:  ------------------------------------------------------------ESDEPQADAR--------KEVV------------------
                                                                    E++   ADA+         EVV                  
Subjt:  ------------------------------------------------------------ESDEPQADAR--------KEVV------------------

Query:  --------------EDVEASD-------------------------------------------------------------------------------
                      E  EAS                                                                                
Subjt:  --------------EDVEASD-------------------------------------------------------------------------------

Query:  -------------------------------------------LKKGYSLPTTRKGLGYKSPEPVRITRRGKAKVTDTNHITVEEVDDSKEKESVDQRTS
                                                   L++G+++P +RKGLGYK PEP+RITR+GK K+ D+NHITV+EVD  KEKE   QRTS
Subjt:  -------------------------------------------LKKGYSLPTTRKGLGYKSPEPVRITRRGKAKVTDTNHITVEEVDDSKEKESVDQRTS

Query:  SFRRIRPPVARALVFKRLSVNETEEESAQPTNSSTRPSVFRRLSM
        +F RI P VARA VF+RLSV E E +  Q T++  R S F RLS+
Subjt:  SFRRIRPPVARALVFKRLSVNETEEESAQPTNSSTRPSVFRRLSM

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]1.1e-1742.07Show/hide
Query:  IEDENEGWTLVVRRKKQKQSYAQKESRLFRDSKRKVKSQRKKGEKKTRRSKPVVKESEDFFYTPQPITLAEYFPRRFLDDSQGETLETVTCHIVDVVEDD
        IE+++EGW +V  RKK++    Q+ESR +++ +R  K+Q+ K +KKT + K V  E  +F    + +TLA++ P+ FL D Q E  E V CH ++  E++
Subjt:  IEDENEGWTLVVRRKKQKQSYAQKESRLFRDSKRKVKSQRKKGEKKTRRSKPVVKESEDFFYTPQPITLAEYFPRRFLDDSQGETLETVTCHIVDVVEDD

Query:  DVPASFSRTVAGPGV---LSSFSIKDLLSLPQEAKSILINALIES
         +P    R++ G GV   LS F+++DLLSLPQE K+ILI+AL+ S
Subjt:  DVPASFSRTVAGPGV---LSSFSIKDLLSLPQEAKSILINALIES

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]1.0e-2358.04Show/hide
Query:  LKKGYSLPTTRKGLGYKSPEPVRITRRGKAKVTDTNHITVEEVDDSKEKESVDQRTSSFRRIRPPVARALVFKRLSVNETEEESAQPTNSSTRPSVFRRL
        L++G+S+P +RKGLGYKSPEP+RIT++GK KV D NHIT+EE D++  KE  +QR S F RIRP VAR +VF+RLS+ E E E  Q   S  R SVFRRL
Subjt:  LKKGYSLPTTRKGLGYKSPEPVRITRRGKAKVTDTNHITVEEVDDSKEKESVDQRTSSFRRIRPPVARALVFKRLSVNETEEESAQPTNSSTRPSVFRRL

Query:  -SMPIGEEESTH
         + PI EE + H
Subjt:  -SMPIGEEESTH

TrEMBL top hitse value%identityAlignment
A0A5A7UDR5 Ty3-gypsy retrotransposon protein1.1e-2345.28Show/hide
Query:  SQEKYDSIEDENEGWTLVVRRKKQKQSYAQKESRLFRDSKRKVKSQRKKGEKKTRRSKPVVKESEDFFYTPQPITLAEYFPRRFLDDSQGETLETVTCHI
        SQEK   IE+++EGWT+V RRKK+K +  QK+ R +++ +R  K+Q+ K +KKTR+ K V +E +DF  T + +TLA++FP RFL D Q E    V CH 
Subjt:  SQEKYDSIEDENEGWTLVVRRKKQKQSYAQKESRLFRDSKRKVKSQRKKGEKKTRRSKPVVKESEDFFYTPQPITLAEYFPRRFLDDSQGETLETVTCHI

Query:  VDVVEDDDVPASFSRTVAGPGV---LSSFSIKDLLSLPQEAKSILINALIESDEPQADA
        ++  E++ +P    R++   GV   LS F++ DLLSLPQE K+ILINAL+ S    + A
Subjt:  VDVVEDDDVPASFSRTVAGPGV---LSSFSIKDLLSLPQEAKSILINALIESDEPQADA

A0A5D3BE72 Ty3-gypsy retrotransposon protein2.2e-2447.68Show/hide
Query:  QEKYDSIEDENEGWTLVVRRKKQKQSYAQKESRLFRDSKRKVKSQRKKGEKKTRRSKPVVKESEDFFYTPQPITLAEYFPRRFLDDSQGETLETVTCHIV
        QEK  SIE ++EGWT+V RRKK+K +  QKE R +R+ +R  K+Q+ K +KKT++ K + +E +DF  T + +TLA +FP RFL D Q E  E V CH +
Subjt:  QEKYDSIEDENEGWTLVVRRKKQKQSYAQKESRLFRDSKRKVKSQRKKGEKKTRRSKPVVKESEDFFYTPQPITLAEYFPRRFLDDSQGETLETVTCHIV

Query:  DVVEDDDVPASFSRTVAGPGV---LSSFSIKDLLSLPQEAKSILINALIES
        D +E++ +P    R++   GV   L  F++ DLLSLPQE K+ILINAL+ S
Subjt:  DVVEDDDVPASFSRTVAGPGV---LSSFSIKDLLSLPQEAKSILINALIES

A0A5D3BSG5 Uncharacterized protein2.9e-2445.28Show/hide
Query:  SQEKYDSIEDENEGWTLVVRRKKQKQSYAQKESRLFRDSKRKVKSQRKKGEKKTRRSKPVVKESEDFFYTPQPITLAEYFPRRFLDDSQGETLETVTCHI
        SQEK   IE+++EGWT+V RRKK+K +  QKE R +R+ ++  K+Q+ K +KKTR+ K + +E +DF  T + +TLA++FP RFL D Q E    V CH 
Subjt:  SQEKYDSIEDENEGWTLVVRRKKQKQSYAQKESRLFRDSKRKVKSQRKKGEKKTRRSKPVVKESEDFFYTPQPITLAEYFPRRFLDDSQGETLETVTCHI

Query:  VDVVEDDDVPASFSRTVAGPGV---LSSFSIKDLLSLPQEAKSILINALIESDEPQADA
        ++ +E++++P    R++   GV   LS F++ DLLSLPQE K ILINAL+ S    + A
Subjt:  VDVVEDDDVPASFSRTVAGPGV---LSSFSIKDLLSLPQEAKSILINALIESDEPQADA

A0A5D3BSG5 Uncharacterized protein5.5e-2356.48Show/hide
Query:  LKKGYSLPTTRKGLGYKSPEPVRITRRGKAKVTDTNHITVEEVDDSKEKESVDQRTSSFRRIRPPVARALVFKRLSVNETEEESAQPTNSSTRPSVFRRL
        L++G+ +P +RKGLGYKSPEP+RITR+GK KV D+NHITV+EVD  +E E   QRTS+F RI P VAR  VF+RLS+ E E +  Q T++  R SVF+RL
Subjt:  LKKGYSLPTTRKGLGYKSPEPVRITRRGKAKVTDTNHITVEEVDDSKEKESVDQRTSSFRRIRPPVARALVFKRLSVNETEEESAQPTNSSTRPSVFRRL

Query:  SMPIGEEE
        ++   EE+
Subjt:  SMPIGEEE

A0A5D3BSG5 Uncharacterized protein8.5e-2429.17Show/hide
Query:  SQEKYDSIEDENEGWTLVVRRKKQKQSYAQKESRLFRDSKRKVKSQRKKGEKKTRRSKPVVKESEDFFYTPQP---ITLAEYFPRRFLDDSQGETLETVT
        SQ K  SIE+++E W +V RRKK+K +  QKES  + + +R  K+++ K +KKTR+ K V +E +DF   P+P   +TL ++FP R L D Q E LE V 
Subjt:  SQEKYDSIEDENEGWTLVVRRKKQKQSYAQKESRLFRDSKRKVKSQRKKGEKKTRRSKPVVKESEDFFYTPQP---ITLAEYFPRRFLDDSQGETLETVT

Query:  CHIVDVVEDDDVPASFSRTVAGPGVL---SSFSIKDLLSLPQEAKSILINALIES-----------------------------------DEP-------
        CH ++ +E++ +    SR++   GV    S  ++ DLLSLPQE K+ LINAL+ S                                   + P       
Subjt:  CHIVDVVEDDDVPASFSRTVAGPGVL---SSFSIKDLLSLPQEAKSILINALIES-----------------------------------DEP-------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -----QADARK-----------EVVEDVEASDLKK-----GYSLPTTRKGLGYKSPEPVRITRRGKAKVTDTNHITVEEVDDSKEKESVDQRTSSFRRIR
             Q D +K           ++ E  E S ++K     G+++P +RKGLGYKSPEP+ ITR+ K KV D+NHIT+EEVD  ++KE   QRTS+F RI 
Subjt:  -----QADARK-----------EVVEDVEASDLKK-----GYSLPTTRKGLGYKSPEPVRITRRGKAKVTDTNHITVEEVDDSKEKESVDQRTSSFRRIR

Query:  PPVARALV
        P VARALV
Subjt:  PPVARALV

A0A5D3C0W6 Ty3-gypsy retrotransposon protein1.3e-2425.87Show/hide
Query:  SQEKYDSIEDENEGWTLVVRRKKQKQSYAQKESRLFRDSKRKVKSQRKKGEKKTRRSKPVVKESEDFFYTPQPITLAEYFPRRFLDDSQGETLETVTCHI
        SQEK   IE+++E WT+V RRKK+K +  QKE R +R+ +R  K+Q+ K +KKTR+ K + KE +DF  T + ITLA++FP RFL D Q E    V CH 
Subjt:  SQEKYDSIEDENEGWTLVVRRKKQKQSYAQKESRLFRDSKRKVKSQRKKGEKKTRRSKPVVKESEDFFYTPQPITLAEYFPRRFLDDSQGETLETVTCHI

Query:  VDVVEDDDVPASFSRTVAGPGVLSSFSIKDLLSLPQEAKSILINALI-----------------------------------------------------
        ++  E++ +P            LS F++ DLLSLPQE K+ILINAL+                                                     
Subjt:  VDVVEDDDVPASFSRTVAGPGVLSSFSIKDLLSLPQEAKSILINALI-----------------------------------------------------

Query:  ------------------------------------------------------------ESDEPQADAR--------KEVV------------------
                                                                    E++   ADA+         EVV                  
Subjt:  ------------------------------------------------------------ESDEPQADAR--------KEVV------------------

Query:  --------------EDVEASD-------------------------------------------------------------------------------
                      E  EAS                                                                                
Subjt:  --------------EDVEASD-------------------------------------------------------------------------------

Query:  -------------------------------------------LKKGYSLPTTRKGLGYKSPEPVRITRRGKAKVTDTNHITVEEVDDSKEKESVDQRTS
                                                   L++G+++P +RKGLGYK PEP+RITR+GK K+ D+NHITV+EVD  KEKE   QRTS
Subjt:  -------------------------------------------LKKGYSLPTTRKGLGYKSPEPVRITRRGKAKVTDTNHITVEEVDDSKEKESVDQRTS

Query:  SFRRIRPPVARALVFKRLSVNETEEESAQPTNSSTRPSVFRRLSM
        +F RI P VARA VF+RLSV E E +  Q T++  R S F RLS+
Subjt:  SFRRIRPPVARALVFKRLSVNETEEESAQPTNSSTRPSVFRRLSM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGGATCCCAAGAAAAATATGATTCCATCGAAGATGAGAACGAAGGTTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAACAAAGTTACGCACAGAAAGAGTCCCG
CCTATTTCGAGATAGTAAAAGAAAGGTTAAGTCTCAAAGAAAGAAGGGAGAAAAGAAGACAAGGAGGTCAAAGCCTGTCGTGAAGGAAAGTGAAGATTTCTTTTACACTC
CACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAGACACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGAT
GATGTCCCTGCTAGCTTCTCAAGAACAGTGGCAGGTCCAGGAGTCTTATCCTCCTTCAGCATAAAGGACTTATTATCACTTCCTCAGGAAGCTAAAAGTATCCTTATTAA
TGCATTGATAGAGTCTGATGAACCACAAGCTGATGCAAGAAAGGAAGTTGTTGAAGATGTGGAGGCATCTGACCTGAAAAAGGGTTATAGTCTGCCTACAACGAGAAAAG
GGCTTGGATATAAGTCGCCAGAGCCGGTTCGCATAACAAGAAGAGGGAAGGCGAAAGTGACAGACACAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAAAA
GAGAGTGTCGACCAACGAACTTCTAGTTTTAGGCGCATCAGGCCACCAGTTGCTCGTGCTTTAGTCTTTAAGAGATTAAGTGTCAATGAAACGGAAGAAGAAAGCGCACA
ACCTACCAATAGCTCCACTCGACCTTCAGTTTTTCGAAGGTTAAGTATGCCCATTGGGGAAGAAGAGAGTACACACTACAAGAAAAGAGGGCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGGGATCCCAAGAAAAATATGATTCCATCGAAGATGAGAACGAAGGTTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAACAAAGTTACGCACAGAAAGAGTCCCG
CCTATTTCGAGATAGTAAAAGAAAGGTTAAGTCTCAAAGAAAGAAGGGAGAAAAGAAGACAAGGAGGTCAAAGCCTGTCGTGAAGGAAAGTGAAGATTTCTTTTACACTC
CACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAGACACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGAT
GATGTCCCTGCTAGCTTCTCAAGAACAGTGGCAGGTCCAGGAGTCTTATCCTCCTTCAGCATAAAGGACTTATTATCACTTCCTCAGGAAGCTAAAAGTATCCTTATTAA
TGCATTGATAGAGTCTGATGAACCACAAGCTGATGCAAGAAAGGAAGTTGTTGAAGATGTGGAGGCATCTGACCTGAAAAAGGGTTATAGTCTGCCTACAACGAGAAAAG
GGCTTGGATATAAGTCGCCAGAGCCGGTTCGCATAACAAGAAGAGGGAAGGCGAAAGTGACAGACACAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAAAA
GAGAGTGTCGACCAACGAACTTCTAGTTTTAGGCGCATCAGGCCACCAGTTGCTCGTGCTTTAGTCTTTAAGAGATTAAGTGTCAATGAAACGGAAGAAGAAAGCGCACA
ACCTACCAATAGCTCCACTCGACCTTCAGTTTTTCGAAGGTTAAGTATGCCCATTGGGGAAGAAGAGAGTACACACTACAAGAAAAGAGGGCTTTAG
Protein sequenceShow/hide protein sequence
MKGSQEKYDSIEDENEGWTLVVRRKKQKQSYAQKESRLFRDSKRKVKSQRKKGEKKTRRSKPVVKESEDFFYTPQPITLAEYFPRRFLDDSQGETLETVTCHIVDVVEDD
DVPASFSRTVAGPGVLSSFSIKDLLSLPQEAKSILINALIESDEPQADARKEVVEDVEASDLKKGYSLPTTRKGLGYKSPEPVRITRRGKAKVTDTNHITVEEVDDSKEK
ESVDQRTSSFRRIRPPVARALVFKRLSVNETEEESAQPTNSSTRPSVFRRLSMPIGEEESTHYKKRGL