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Spg026717 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026717
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibosome assembly factor mrt4
Genome locationscaffold6:20550060..20551261
RNA-Seq ExpressionSpg026717
SyntenySpg026717
Gene Ontology termsGO:0000027 - ribosomal large subunit assembly (biological process)
GO:0000956 - nuclear-transcribed mRNA catabolic process (biological process)
GO:0006364 - rRNA processing (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0022626 - cytosolic ribosome (cellular component)
GO:0030687 - preribosome, large subunit precursor (cellular component)
InterPro domainsIPR001790 - Ribosomal protein L10P
IPR043141 - Ribosomal protein L10-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022157470.1 mRNA turnover protein 4 homolog [Momordica charantia]3.5e-25100Show/hide
Query:  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLKSTSR
        MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLKSTSR
Subjt:  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLKSTSR

XP_022933518.1 mRNA turnover protein 4 homolog [Cucurbita moschata]1.0e-2498.46Show/hide
Query:  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLKSTSR
        MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLKS+SR
Subjt:  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLKSTSR

XP_022969955.1 mRNA turnover protein 4 homolog [Cucurbita maxima]1.0e-2498.46Show/hide
Query:  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLKSTSR
        MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLKS+SR
Subjt:  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLKSTSR

XP_023529350.1 mRNA turnover protein 4 homolog [Cucurbita pepo subsp. pepo]1.0e-2498.46Show/hide
Query:  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLKSTSR
        MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLKS+SR
Subjt:  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLKSTSR

XP_038902849.1 mRNA turnover protein 4 homolog [Benincasa hispida]8.5e-2495.38Show/hide
Query:  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLKSTSR
        MPKSKRDRPVTLSKTKKKGREHKKSMV+LIRQAVENYNSI+VFTVENMRNLKFKELREQLKS+SR
Subjt:  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLKSTSR

TrEMBL top hitse value%identityAlignment
A0A1U8ANZ6 Ribosome assembly factor mrt44.7e-2081.54Show/hide
Query:  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLKSTSR
        MPKSKR+RPVTLSKTKKKG+EHK+++V+ IRQA++NYNSIYVF+ ENMRNLKFKE REQLKSTSR
Subjt:  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLKSTSR

A0A6J1DT71 Ribosome assembly factor mrt41.7e-25100Show/hide
Query:  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLKSTSR
        MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLKSTSR
Subjt:  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLKSTSR

A0A6J1F4Z2 Ribosome assembly factor mrt44.9e-2598.46Show/hide
Query:  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLKSTSR
        MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLKS+SR
Subjt:  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLKSTSR

A0A6J1I1E2 Ribosome assembly factor mrt44.9e-2598.46Show/hide
Query:  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLKSTSR
        MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLKS+SR
Subjt:  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLKSTSR

D7T050 Ribosome assembly factor mrt46.2e-2084.62Show/hide
Query:  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLKSTSR
        MPKSKRDRPVTLSKTKKKGR HK+S+V+ IRQAVENY+SIYVF+ ENMRNLKFKE RE+LKSTSR
Subjt:  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLKSTSR

SwissProt top hitse value%identityAlignment
A4FV84 mRNA turnover protein 4 homolog6.2e-0947.54Show/hide
Query:  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLK
        MPKSKRD+ V+L+KT KKG E K+++++ +R+ V+ Y  +++F+V NMRN K K++R   K
Subjt:  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLK

Q75DK9 Ribosome assembly factor mrt44.9e-0643.86Show/hide
Query:  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELR
        MP+SKR + VTL++T+KKGRE+K+ + D +RQA++ Y  ++V  +E++R    +E+R
Subjt:  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELR

Q7S302 Ribosome assembly factor mrt42.9e-0641.67Show/hide
Query:  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL
        MPKSKR +   L++  KK RE K+ + + IR+ + NY   +VF+++NMRN   K++R++L
Subjt:  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL

Q9D0I8 mRNA turnover protein 4 homolog6.2e-0947.54Show/hide
Query:  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLK
        MPKSKRD+ V+L+KT KKG E K+++++ +R+ V+ Y  +++F+V NMRN K K++R   K
Subjt:  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLK

Q9UKD2 mRNA turnover protein 4 homolog6.2e-0947.54Show/hide
Query:  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLK
        MPKSKRD+ V+L+KT KKG E K+++++ +R+ V+ Y  +++F+V NMRN K K++R   K
Subjt:  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLK

Arabidopsis top hitse value%identityAlignment
AT1G25260.1 Ribosomal protein L10 family protein1.4e-1969.23Show/hide
Query:  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLKSTSR
        MPKSKRDRPVTLSKTKKKGREHK+ +V+ IR+AVE Y+S+YVF+ ENMRN+KFKE R+Q +   +
Subjt:  MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLKSTSR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCAAGTCGAAGCGTGATAGACCAGTTACTTTATCAAAAACCAAGAAAAAAGGAAGGGAACATAAGAAATCAATGGTGGATCTGATCAGGCAGGCTGTGGAAAATTA
CAACTCAATTTATGTTTTCACCGTTGAGAACATGCGAAACCTCAAGTTCAAGGAACTCAGGGAGCAGCTAAAGTCAACTAGCAGGCAAGTTGTATTTTCGTACTTTATTA
TATATTTGCTGCATCATTTCAAATATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCCAAGTCGAAGCGTGATAGACCAGTTACTTTATCAAAAACCAAGAAAAAAGGAAGGGAACATAAGAAATCAATGGTGGATCTGATCAGGCAGGCTGTGGAAAATTA
CAACTCAATTTATGTTTTCACCGTTGAGAACATGCGAAACCTCAAGTTCAAGGAACTCAGGGAGCAGCTAAAGTCAACTAGCAGGCAAGTTGTATTTTCGTACTTTATTA
TATATTTGCTGCATCATTTCAAATATTGA
Protein sequenceShow/hide protein sequence
MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLKSTSRQVVFSYFIIYLLHHFKY