CuGenDBv2

Gene ID	Spg026732
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	50S ribosomal protein L33-like
Genome location	scaffold6:20405469..20411860
RNA-Seq Expression	Spg026732
Synteny	Spg026732
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0009536 - plastid (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR001705 - Ribosomal protein L33 IPR011332 - Zinc-binding ribosomal protein IPR018264 - Ribosomal protein L33, conserved site IPR038584 - Ribosomal protein L33 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6577004.1 hypothetical protein SDJN03_24578, partial [Cucurbita argyrosperma subsp. sororia]

1.5e-24

83.33

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Query:  QRLSRTKGGDPDKKKKTRRKGGKRDFKIVRLSSAVGIGFFYAKKKSRKMADKIELQKYDPIAKRHVLFTEVK
        +RLSR +GGDP+KKKKTRRKGG++DFKI+RLSS  G GFFYAKKKSRKMADKIELQK+DP+AKRHVLFTEVK
Subjt:  QRLSRTKGGDPDKKKKTRRKGGKRDFKIVRLSSAVGIGFFYAKKKSRKMADKIELQKYDPIAKRHVLFTEVK

KAG7015026.1 rpmG, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.5e-24

83.33

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Query:  QRLSRTKGGDPDKKKKTRRKGGKRDFKIVRLSSAVGIGFFYAKKKSRKMADKIELQKYDPIAKRHVLFTEVK
        +RLSR +GGDP+KKKKTRRKGG++DFKI+RLSS  G GFFYAKKKSRKMADKIELQK+DP+AKRHVLFTEVK
Subjt:  QRLSRTKGGDPDKKKKTRRKGGKRDFKIVRLSSAVGIGFFYAKKKSRKMADKIELQKYDPIAKRHVLFTEVK

XP_022922689.1 uncharacterized protein LOC111430611 isoform X1 [Cucurbita moschata]

4.3e-24

83.1

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Query:  QRLSRTKGGDPDKKKKTRRKGGKRDFKIVRLSSAVGIGFFYAKKKSRKMADKIELQKYDPIAKRHVLFTEV
        +RLSR +GGDP+KKKKTRRKGG++DFKI+RLSS  G GFFYAKKKSRKMADKIELQK+DP+AKRHVLFTEV
Subjt:  QRLSRTKGGDPDKKKKTRRKGGKRDFKIVRLSSAVGIGFFYAKKKSRKMADKIELQKYDPIAKRHVLFTEV

XP_022922690.1 uncharacterized protein LOC111430611 isoform X2 [Cucurbita moschata]

1.5e-24

83.33

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Query:  QRLSRTKGGDPDKKKKTRRKGGKRDFKIVRLSSAVGIGFFYAKKKSRKMADKIELQKYDPIAKRHVLFTEVK
        +RLSR +GGDP+KKKKTRRKGG++DFKI+RLSS  G GFFYAKKKSRKMADKIELQK+DP+AKRHVLFTEVK
Subjt:  QRLSRTKGGDPDKKKKTRRKGGKRDFKIVRLSSAVGIGFFYAKKKSRKMADKIELQKYDPIAKRHVLFTEVK

XP_023552499.1 uncharacterized protein LOC111810144 [Cucurbita pepo subsp. pepo]

1.5e-24

83.33

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Query:  QRLSRTKGGDPDKKKKTRRKGGKRDFKIVRLSSAVGIGFFYAKKKSRKMADKIELQKYDPIAKRHVLFTEVK
        +RLSR +GGDP+KKKKTRRKGG++DFKI+RLSS  G GFFYAKKKSRKMADKIELQK+DP+AKRHVLFTEVK
Subjt:  QRLSRTKGGDPDKKKKTRRKGGKRDFKIVRLSSAVGIGFFYAKKKSRKMADKIELQKYDPIAKRHVLFTEVK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UZ21 50S ribosomal protein L33-like

2.3e-23

83.33

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Query:  QRLSRTKGGDPDKKKKTRRKGGKRDFKIVRLSSAVGIGFFYAKKKSRKMADKIELQKYDPIAKRHVLFTEVK
        +RLSR +GGDP KKKKTRRKGG++DFKIVRLSS    GFFYAKKKSRKMADKIE+QKYDPIA RHVLFTEVK
Subjt:  QRLSRTKGGDPDKKKKTRRKGGKRDFKIVRLSSAVGIGFFYAKKKSRKMADKIELQKYDPIAKRHVLFTEVK

A0A6J1E445 uncharacterized protein LOC111430611 isoform X1

2.1e-24

83.1

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Query:  QRLSRTKGGDPDKKKKTRRKGGKRDFKIVRLSSAVGIGFFYAKKKSRKMADKIELQKYDPIAKRHVLFTEV
        +RLSR +GGDP+KKKKTRRKGG++DFKI+RLSS  G GFFYAKKKSRKMADKIELQK+DP+AKRHVLFTEV
Subjt:  QRLSRTKGGDPDKKKKTRRKGGKRDFKIVRLSSAVGIGFFYAKKKSRKMADKIELQKYDPIAKRHVLFTEV

A0A6J1E4T6 uncharacterized protein LOC111430611 isoform X2

7.2e-25

83.33

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Query:  QRLSRTKGGDPDKKKKTRRKGGKRDFKIVRLSSAVGIGFFYAKKKSRKMADKIELQKYDPIAKRHVLFTEVK
        +RLSR +GGDP+KKKKTRRKGG++DFKI+RLSS  G GFFYAKKKSRKMADKIELQK+DP+AKRHVLFTEVK
Subjt:  QRLSRTKGGDPDKKKKTRRKGGKRDFKIVRLSSAVGIGFFYAKKKSRKMADKIELQKYDPIAKRHVLFTEVK

A0A6J1J250 uncharacterized protein LOC111482725 isoform X2

4.7e-24

80.56

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Query:  QRLSRTKGGDPDKKKKTRRKGGKRDFKIVRLSSAVGIGFFYAKKKSRKMADKIELQKYDPIAKRHVLFTEVK
        +RLSR +GGDP+KK+KTRRKGG++DFKI+RLSS  G GFFYAKKKSRKMADKIELQK+DP+AKRHVLFTE K
Subjt:  QRLSRTKGGDPDKKKKTRRKGGKRDFKIVRLSSAVGIGFFYAKKKSRKMADKIELQKYDPIAKRHVLFTEVK

A0A6J1J566 uncharacterized protein LOC111482725 isoform X1

4.7e-24

80.56

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Query:  QRLSRTKGGDPDKKKKTRRKGGKRDFKIVRLSSAVGIGFFYAKKKSRKMADKIELQKYDPIAKRHVLFTEVK
        +RLSR +GGDP+KK+KTRRKGG++DFKI+RLSS  G GFFYAKKKSRKMADKIELQK+DP+AKRHVLFTE K
Subjt:  QRLSRTKGGDPDKKKKTRRKGGKRDFKIVRLSSAVGIGFFYAKKKSRKMADKIELQKYDPIAKRHVLFTEVK

SwissProt top hits

e value

%identity

Alignment

B6IN38 50S ribosomal protein L33

1.9e-06

47.06

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Query:  KRDFKIVRLSSAVGIGFFYAKKKS-RKMADKIELQKYDPIAKRHVLFTEVK
        K++  +++L S+   GFFY KKK+ RK  +K+E +KYDP+A++HV+F E K
Subjt:  KRDFKIVRLSSAVGIGFFYAKKKS-RKMADKIELQKYDPIAKRHVLFTEVK

B9KI16 50S ribosomal protein L33

9.4e-06

47.83

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Query:  IVRLSSAVGIGFFYAKKKS-RKMADKIELQKYDPIAKRHVLFTEVK
        +V+L S+ G G+FY KK+  +K+ +K+  +KYDP+A++HVLF E K
Subjt:  IVRLSSAVGIGFFYAKKKS-RKMADKIELQKYDPIAKRHVLFTEVK

Q2W1A2 50S ribosomal protein L33

7.2e-06

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Query:  IVRLSSAVGIGFFY-AKKKSRKMADKIELQKYDPIAKRHVLFTEVK
        +++L S  G GFFY AKK  RK  +K+E +KYDP+ ++HV F E K
Subjt:  IVRLSSAVGIGFFY-AKKKSRKMADKIELQKYDPIAKRHVLFTEVK

Q5FFJ4 50S ribosomal protein L33

6.5e-07

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Query:  IVRLSSAVGIGFFYAKKKS-RKMADKIELQKYDPIAKRHVLFTEVK
        +V+L+S+ G G+FY KK++ +K+ +K+  +KYDP+A++HVLFTE K
Subjt:  IVRLSSAVGIGFFYAKKKS-RKMADKIELQKYDPIAKRHVLFTEVK

Q5HBV6 50S ribosomal protein L33

6.5e-07

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Query:  IVRLSSAVGIGFFYAKKKS-RKMADKIELQKYDPIAKRHVLFTEVK
        +V+L+S+ G G+FY KK++ +K+ +K+  +KYDP+A++HVLFTE K
Subjt:  IVRLSSAVGIGFFYAKKKS-RKMADKIELQKYDPIAKRHVLFTEVK

Arabidopsis top hits

e value

%identity

Alignment

AT3G06320.1 Ribosomal protein L33 family protein

4.2e-09

53.23

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Query:  DKKKKTRRKGGKRDFKIVRLSSAVGIGFFYAKKKSRK-MADKIELQKYDPIAKRHVLFTEVK
        DK+KKT        F  +RL SA G GFFY K+KS K + +K+E +KYDP   RHVLFTE K
Subjt:  DKKKKTRRKGGKRDFKIVRLSSAVGIGFFYAKKKSRK-MADKIELQKYDPIAKRHVLFTEVK

AT5G18790.1 Ribosomal protein L33 family protein

4.2e-09

53.23

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Query:  DKKKKTRRKGGKRDFKIVRLSSAVGIGFFYAKKKSRK-MADKIELQKYDPIAKRHVLFTEVK
        DK+KKT        F  +RL SA G GFFY K+KS K + +K+E +KYDP   RHVLFTE K
Subjt:  DKKKKTRRKGGKRDFKIVRLSSAVGIGFFYAKKKSRK-MADKIELQKYDPIAKRHVLFTEVK

Sequences

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CDS sequence

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ATGAGAGCCCGGGCTTCCGAGTCTACCTCGCCTCATCCAGATTCGAGATTATGTGAGCCTGGACCATGGGTCTACCTCACCTCATCTGACTTGAGCCTATCACGCGAACC
CGGACTACCGAGTCTACCTCGCCTCATCCAGATTCGAGATTATCATTCCCTTCCCATTCTCTATCTCTATAGACTCCCACAAGTCGTTCTTGGCCCGGAGAATAGTAGGG
AAGACACTAGAGGTGGTCCACACACCGTTCGTGATCAAAGGAATCAAAGGGAGTTGTTGAATCGGTCTCCAAAAGCTCACCTGGCTGAGGCCGATGCCAAGCACATCTTG
CCGAGGCCGAGCACAAACTTAAAAGGCCATGTCTTTCCCCTTCAAATAAATTCACCGTTGATGTCACGTGAAGGTCAGAGGTTGAGTAGGACGAAGGGTGGTGATCCAGA
CAAGAAAAAGAAGACAAGGAGGAAAGGAGGAAAGAGAGATTTCAAAATAGTCCGACTTTCCTCAGCAGTTGGGATTGGTTTTTTCTATGCCAAGAAGAAAAGCAGAAAGA
TGGCTGATAAGATTGAGCTCCAGAAATATGACCCTATTGCAAAACGTCATGTTTTGTTCACTGAAGTCAAGTGA

mRNA sequence

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Protein sequence

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MRARASESTSPHPDSRLCEPGPWVYLTSSDLSLSREPGLPSLPRLIQIRDYHSLPILYLYRLPQVVLGPENSREDTRGGPHTVRDQRNQRELLNRSPKAHLAEADAKHIL
PRPSTNLKGHVFPLQINSPLMSREGQRLSRTKGGDPDKKKKTRRKGGKRDFKIVRLSSAVGIGFFYAKKKSRKMADKIELQKYDPIAKRHVLFTEVK

Spg026732 (gene) of Sponge gourd (cylindrica) v1 genome