; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg026746 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026746
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold6:20478237..20481559
RNA-Seq ExpressionSpg026746
SyntenySpg026746
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033820.1 Retrotransposon gag protein [Cucumis melo var. makuwa]7.6e-0657.14Show/hide
Query:  SVFDRLKVTDNQPQRNIDNLEVKLFDEVSSDKKLHNSILSRMKRKFSVLINTEGSL
        S FDRLK+T+NQ QR + +L+ K F E + D K+H+ + SR+KRK SV INTEGSL
Subjt:  SVFDRLKVTDNQPQRNIDNLEVKLFDEVSSDKKLHNSILSRMKRKFSVLINTEGSL

KAA0035697.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.4e-0657.14Show/hide
Query:  SVFDRLKVTDNQPQRNIDNLEVKLFDEVSSDKKLHNSILSRMKRKFSVLINTEGSL
        S FDRLK+T++Q Q+ +  L+ K F E ++D K+H+ +LSRMKRK SV INTEGSL
Subjt:  SVFDRLKVTDNQPQRNIDNLEVKLFDEVSSDKKLHNSILSRMKRKFSVLINTEGSL

KAA0041771.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.3e-0557.14Show/hide
Query:  SVFDRLKVTDNQPQRNIDNLEVKLFDEVSSDKKLHNSILSRMKRKFSVLINTEGSL
        S FDRLK+T++Q QR +  L+ K F E + D K+H+ + SRMKRKFSV INTE SL
Subjt:  SVFDRLKVTDNQPQRNIDNLEVKLFDEVSSDKKLHNSILSRMKRKFSVLINTEGSL

KAA0057874.1 gag protease polyprotein [Cucumis melo var. makuwa]2.2e-0557.14Show/hide
Query:  SVFDRLKVTDNQPQRNIDNLEVKLFDEVSSDKKLHNSILSRMKRKFSVLINTEGSL
        S FDRLK+T++Q QR +  L+ K F E + D K+H  + SRMKRK SV INTEGSL
Subjt:  SVFDRLKVTDNQPQRNIDNLEVKLFDEVSSDKKLHNSILSRMKRKFSVLINTEGSL

TYK28989.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.8e-0638.53Show/hide
Query:  DVVTDMMTKTRTMEERMVEMQEHINTLMKVIEERDSQIEHLKI----------SVFDRLKVTDNQPQRNIDNLEVKLFDEVSSDKKLHNSILSRMKRKFS
        D +    T++   +   + M+E  N  +  I  R S  + L I          S FDRLK+T++Q QR + +L+ K F E + D K+H+ + SRMKRK S
Subjt:  DVVTDMMTKTRTMEERMVEMQEHINTLMKVIEERDSQIEHLKI----------SVFDRLKVTDNQPQRNIDNLEVKLFDEVSSDKKLHNSILSRMKRKFS

Query:  VLINTEGSL
        V INTEGSL
Subjt:  VLINTEGSL

TrEMBL top hitse value%identityAlignment
A0A5A7TJH2 Retrotransposon gag protein6.3e-0657.14Show/hide
Query:  SVFDRLKVTDNQPQRNIDNLEVKLFDEVSSDKKLHNSILSRMKRKFSVLINTEGSL
        S FDRLK+T++Q QR +  L+ K F E + D K+H+ + SRMKRKFSV INTE SL
Subjt:  SVFDRLKVTDNQPQRNIDNLEVKLFDEVSSDKKLHNSILSRMKRKFSVLINTEGSL

A0A5A7UC34 Uncharacterized protein1.4e-0549.32Show/hide
Query:  SVFDRLKVTDNQPQRNIDNLEVKLFDEVSSDKKLHNSILSRMKRKFSVLINTEGSLKLLLSKFKGSHTATLLV
        S FDRLK+T +Q QR + +L+VK F E + D K+H+ + SRMKRK SV INTEG+   L   F+     TLL+
Subjt:  SVFDRLKVTDNQPQRNIDNLEVKLFDEVSSDKKLHNSILSRMKRKFSVLINTEGSLKLLLSKFKGSHTATLLV

A0A5D3DDW0 Retrotransposon gag protein3.7e-0657.14Show/hide
Query:  SVFDRLKVTDNQPQRNIDNLEVKLFDEVSSDKKLHNSILSRMKRKFSVLINTEGSL
        S FDRLK+T+NQ QR + +L+ K F E + D K+H+ + SR+KRK SV INTEGSL
Subjt:  SVFDRLKVTDNQPQRNIDNLEVKLFDEVSSDKKLHNSILSRMKRKFSVLINTEGSL

A0A5D3DZZ8 Retrotransposon gag protein2.8e-0638.53Show/hide
Query:  DVVTDMMTKTRTMEERMVEMQEHINTLMKVIEERDSQIEHLKI----------SVFDRLKVTDNQPQRNIDNLEVKLFDEVSSDKKLHNSILSRMKRKFS
        D +    T++   +   + M+E  N  +  I  R S  + L I          S FDRLK+T++Q QR + +L+ K F E + D K+H+ + SRMKRK S
Subjt:  DVVTDMMTKTRTMEERMVEMQEHINTLMKVIEERDSQIEHLKI----------SVFDRLKVTDNQPQRNIDNLEVKLFDEVSSDKKLHNSILSRMKRKFS

Query:  VLINTEGSL
        V INTEGSL
Subjt:  VLINTEGSL

A0A5D3E4T1 Retrotransposon gag protein2.1e-0657.14Show/hide
Query:  SVFDRLKVTDNQPQRNIDNLEVKLFDEVSSDKKLHNSILSRMKRKFSVLINTEGSL
        S FDRLK+T++Q Q+ +  L+ K F E ++D K+H+ +LSRMKRK SV INTEGSL
Subjt:  SVFDRLKVTDNQPQRNIDNLEVKLFDEVSSDKKLHNSILSRMKRKFSVLINTEGSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAAGTCTTACATGGGTTCTACTACCCATTGTTGCTTCCATGAACTGAGGTTGCAAGAAGATAAAGTTCCTATCATTGTAGGCGAAGAAACAACATTGCAGGGGGC
ATATACCAATGACAAGTTGTTTGTTAAGTATAACCCTTTGTTTGAACCTGATTCTGACGTAGTGACTGACATGATGACTAAGACAAGGACTATGGAAGAAAGAATGGTTG
AGATGCAGGAGCACATCAACACCTTGATGAAGGTGATTGAAGAAAGAGATTCTCAAATTGAGCACCTAAAGATATCTGTCTTTGATCGCCTCAAAGTAACAGACAATCAA
CCTCAAAGAAACATAGATAACTTAGAGGTGAAACTGTTCGATGAAGTAAGCAGTGACAAGAAGCTTCATAATAGCATCCTGTCACGTATGAAGAGGAAGTTCTCTGTTCT
CATAAATACAGAAGGTTCCTTGAAGTTGCTTCTCTCCAAGTTCAAAGGTTCTCACACTGCTACGCTGCTAGTCCCTTCTCCCTCCAAGTTCGAAGGTTCTCACGCTGCTA
CGCTGCTAGTCCCTTCTCCCTCCAAGTTCGAAGGTTTTCACTCGTTTCGCTACACTTCCTTCTCTTCAAGTTCGAAGGTTCACGCGGCGCTACTTCATTGTTTCTTCTCC
AAGTTCGAAGGTTTTCACACTACGTTTCTTCCTTCTCAAAATTCGAAGGTTCTCACGCTGTTTCGCAGTTGTTCCTTTTCCAAGTTCGAAAGCGTTGTACGTTGTTGTGC
TGTTCATTCTCTAAGTTCGAAGGTTCTCACGCTGCGCTGCTTCCTTCGCCAATTCGAAGGTTTTCACGCTCTACATTGCTACCAAATTTCTTCTCCAAGTTTGAAGGCTC
TCACGTGCTGTCCTACTGTTCTTTCTCCAAGTTCGAAGGTTTTGCTCCGTTGTTTATGCTTGCAGCTTCTTAAGTTGTGTTGTTTCGTTGTGCCTTCTCTAAGTTTGAAG
GTTCTTCTTCGTTGTAAACATTCCAGCAGTAAAGAAGCACGAGTTTGGATGACATCCTGTGTCCTTGGGTCGAAAAAAAAACGTCATAGCAGTAAGAGTCCAAAGACATC
ATGTGTCTTTGTACTAATGCTGAAAGACGTTGCAACAGTAAAGGAGCCCAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAACAAGTCTTACATGGGTTCTACTACCCATTGTTGCTTCCATGAACTGAGGTTGCAAGAAGATAAAGTTCCTATCATTGTAGGCGAAGAAACAACATTGCAGGGGGC
ATATACCAATGACAAGTTGTTTGTTAAGTATAACCCTTTGTTTGAACCTGATTCTGACGTAGTGACTGACATGATGACTAAGACAAGGACTATGGAAGAAAGAATGGTTG
AGATGCAGGAGCACATCAACACCTTGATGAAGGTGATTGAAGAAAGAGATTCTCAAATTGAGCACCTAAAGATATCTGTCTTTGATCGCCTCAAAGTAACAGACAATCAA
CCTCAAAGAAACATAGATAACTTAGAGGTGAAACTGTTCGATGAAGTAAGCAGTGACAAGAAGCTTCATAATAGCATCCTGTCACGTATGAAGAGGAAGTTCTCTGTTCT
CATAAATACAGAAGGTTCCTTGAAGTTGCTTCTCTCCAAGTTCAAAGGTTCTCACACTGCTACGCTGCTAGTCCCTTCTCCCTCCAAGTTCGAAGGTTCTCACGCTGCTA
CGCTGCTAGTCCCTTCTCCCTCCAAGTTCGAAGGTTTTCACTCGTTTCGCTACACTTCCTTCTCTTCAAGTTCGAAGGTTCACGCGGCGCTACTTCATTGTTTCTTCTCC
AAGTTCGAAGGTTTTCACACTACGTTTCTTCCTTCTCAAAATTCGAAGGTTCTCACGCTGTTTCGCAGTTGTTCCTTTTCCAAGTTCGAAAGCGTTGTACGTTGTTGTGC
TGTTCATTCTCTAAGTTCGAAGGTTCTCACGCTGCGCTGCTTCCTTCGCCAATTCGAAGGTTTTCACGCTCTACATTGCTACCAAATTTCTTCTCCAAGTTTGAAGGCTC
TCACGTGCTGTCCTACTGTTCTTTCTCCAAGTTCGAAGGTTTTGCTCCGTTGTTTATGCTTGCAGCTTCTTAAGTTGTGTTGTTTCGTTGTGCCTTCTCTAAGTTTGAAG
GTTCTTCTTCGTTGTAAACATTCCAGCAGTAAAGAAGCACGAGTTTGGATGACATCCTGTGTCCTTGGGTCGAAAAAAAAACGTCATAGCAGTAAGAGTCCAAAGACATC
ATGTGTCTTTGTACTAATGCTGAAAGACGTTGCAACAGTAAAGGAGCCCAAGTGA
Protein sequenceShow/hide protein sequence
MNKSYMGSTTHCCFHELRLQEDKVPIIVGEETTLQGAYTNDKLFVKYNPLFEPDSDVVTDMMTKTRTMEERMVEMQEHINTLMKVIEERDSQIEHLKISVFDRLKVTDNQ
PQRNIDNLEVKLFDEVSSDKKLHNSILSRMKRKFSVLINTEGSLKLLLSKFKGSHTATLLVPSPSKFEGSHAATLLVPSPSKFEGFHSFRYTSFSSSSKVHAALLHCFFS
KFEGFHTTFLPSQNSKVLTLFRSCSFSKFESVVRCCAVHSLSSKVLTLRCFLRQFEGFHALHCYQISSPSLKALTCCPTVLSPSSKVLLRCLCLQLLKLCCFVVPSLSLK
VLLRCKHSSSKEARVWMTSCVLGSKKKRHSSKSPKTSCVFVLMLKDVATVKEPK