; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg026755 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026755
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold13:27417157..27433723
RNA-Seq ExpressionSpg026755
SyntenySpg026755
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]7.6e-1557.32Show/hide
Query:  KLYLVSCRVFENEEFDVPRGNRSSLQTGELDKTPEAIWYGVHTGYIPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTS
        +L+++  R+   E  ++PRGNR SLQT E+DKT             PL TLSVL DNDAVVSAG+APLRQRRWEC  GPTTS
Subjt:  KLYLVSCRVFENEEFDVPRGNRSSLQTGELDKTPEAIWYGVHTGYIPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTS

KAA0040296.1 hypothetical protein E6C27_scaffold2379G00310 [Cucumis melo var. makuwa]1.2e-1252.08Show/hide
Query:  NQEHSGVYKLNQKL--YLVSCRVFENEEFDVPRGNRSSLQTGELDKTPEAIWYGVHTGYIPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTS
        N    G+ +L+  L   L S +  E+ +    RGNR SLQTGELDKT              L TLSVLR+NDA VSAGR PLRQRRWEC  GPTTS
Subjt:  NQEHSGVYKLNQKL--YLVSCRVFENEEFDVPRGNRSSLQTGELDKTPEAIWYGVHTGYIPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTS

KAA0040575.1 putative integrase [Cucumis melo var. makuwa]1.5e-1851.11Show/hide
Query:  GEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHSRIWVQAVNLWFFIRF-------ELHRRNQEHSGVYKLNQKL-YLVSCRVFENEEFDVPRGNRSSLQ
        G+HFEERVK EEEEEFRGLRLKKIGKSSC ASH RIWVQ      F+ F       E+H+ NQ+   +  L     +L+     ++ ++D+ RGNR SLQ
Subjt:  GEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHSRIWVQAVNLWFFIRF-------ELHRRNQEHSGVYKLNQKL-YLVSCRVFENEEFDVPRGNRSSLQ

Query:  TGELDKTPEAIWYGVHTGYIPLLTLSVLRDNDAVV
         GELDKT             PL T  VLRDNDAVV
Subjt:  TGELDKTPEAIWYGVHTGYIPLLTLSVLRDNDAVV

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]7.6e-1557.32Show/hide
Query:  KLYLVSCRVFENEEFDVPRGNRSSLQTGELDKTPEAIWYGVHTGYIPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTS
        +L+++  R+   E  ++PRGNR SLQT E+DKT             PL TLSVL DNDAVVSAG+APLRQRRWEC  GPTTS
Subjt:  KLYLVSCRVFENEEFDVPRGNRSSLQTGELDKTPEAIWYGVHTGYIPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTS

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]1.0e-1953.79Show/hide
Query:  EHFEERVKEEEEEEFRGLRLKKIGKSSCKASHSRIWVQAVNL--WFFIRFELHRRNQEHSGVYKLNQKLYLVSCRVFENEEFDV-PRGNRSSLQTGELDK
        EHFEERVK EEEEEFRGLRLKKIGKSSCKA+H RIW    +     F+ F       E   V K NQKLY       ++ ++DV PRGNRSSLQTG+LDK
Subjt:  EHFEERVKEEEEEEFRGLRLKKIGKSSCKASHSRIWVQAVNL--WFFIRFELHRRNQEHSGVYKLNQKLYLVSCRVFENEEFDV-PRGNRSSLQTGELDK

Query:  TPEAI----------WYGVHTGYI--PLLTLSVLRDNDAVVSAGR
           +I           YG     +  PL TLSVLRDNDAVVS G+
Subjt:  TPEAI----------WYGVHTGYI--PLLTLSVLRDNDAVVSAGR

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase3.7e-1557.32Show/hide
Query:  KLYLVSCRVFENEEFDVPRGNRSSLQTGELDKTPEAIWYGVHTGYIPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTS
        +L+++  R+   E  ++PRGNR SLQT E+DKT             PL TLSVL DNDAVVSAG+APLRQRRWEC  GPTTS
Subjt:  KLYLVSCRVFENEEFDVPRGNRSSLQTGELDKTPEAIWYGVHTGYIPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTS

A0A5A7TDY3 Uncharacterized protein5.9e-1352.08Show/hide
Query:  NQEHSGVYKLNQKL--YLVSCRVFENEEFDVPRGNRSSLQTGELDKTPEAIWYGVHTGYIPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTS
        N    G+ +L+  L   L S +  E+ +    RGNR SLQTGELDKT              L TLSVLR+NDA VSAGR PLRQRRWEC  GPTTS
Subjt:  NQEHSGVYKLNQKL--YLVSCRVFENEEFDVPRGNRSSLQTGELDKTPEAIWYGVHTGYIPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTS

A0A5A7TGM2 Putative integrase7.1e-1951.11Show/hide
Query:  GEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHSRIWVQAVNLWFFIRF-------ELHRRNQEHSGVYKLNQKL-YLVSCRVFENEEFDVPRGNRSSLQ
        G+HFEERVK EEEEEFRGLRLKKIGKSSC ASH RIWVQ      F+ F       E+H+ NQ+   +  L     +L+     ++ ++D+ RGNR SLQ
Subjt:  GEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHSRIWVQAVNLWFFIRF-------ELHRRNQEHSGVYKLNQKL-YLVSCRVFENEEFDVPRGNRSSLQ

Query:  TGELDKTPEAIWYGVHTGYIPLLTLSVLRDNDAVV
         GELDKT             PL T  VLRDNDAVV
Subjt:  TGELDKTPEAIWYGVHTGYIPLLTLSVLRDNDAVV

A0A5D3BTP3 Reverse transcriptase3.7e-1557.32Show/hide
Query:  KLYLVSCRVFENEEFDVPRGNRSSLQTGELDKTPEAIWYGVHTGYIPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTS
        +L+++  R+   E  ++PRGNR SLQT E+DKT             PL TLSVL DNDAVVSAG+APLRQRRWEC  GPTTS
Subjt:  KLYLVSCRVFENEEFDVPRGNRSSLQTGELDKTPEAIWYGVHTGYIPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTS

A0A5D3CAC6 Uncharacterized protein4.9e-2053.79Show/hide
Query:  EHFEERVKEEEEEEFRGLRLKKIGKSSCKASHSRIWVQAVNL--WFFIRFELHRRNQEHSGVYKLNQKLYLVSCRVFENEEFDV-PRGNRSSLQTGELDK
        EHFEERVK EEEEEFRGLRLKKIGKSSCKA+H RIW    +     F+ F       E   V K NQKLY       ++ ++DV PRGNRSSLQTG+LDK
Subjt:  EHFEERVKEEEEEEFRGLRLKKIGKSSCKASHSRIWVQAVNL--WFFIRFELHRRNQEHSGVYKLNQKLYLVSCRVFENEEFDV-PRGNRSSLQTGELDK

Query:  TPEAI----------WYGVHTGYI--PLLTLSVLRDNDAVVSAGR
           +I           YG     +  PL TLSVLRDNDAVVS G+
Subjt:  TPEAI----------WYGVHTGYI--PLLTLSVLRDNDAVVSAGR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAGCGTTTCAATAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAA
GCTAGCAGCTGGTCCGGGAGGGGAGCACTTTGAGGAGAGAGTGAAGGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGTTCATGCAAAG
CCAGCCATTCCAGAATCTGGGTGCAAGCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGCATTCTGGGGTGTACAAGTTGAATCAGAAG
CTCTATTTGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGTGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTCCCGAGGCTATATG
GTACGGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGT
GCTGGGCGGGCCCCACTACATCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAGCGTTTCAATAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAA
GCTAGCAGCTGGTCCGGGAGGGGAGCACTTTGAGGAGAGAGTGAAGGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGTTCATGCAAAG
CCAGCCATTCCAGAATCTGGGTGCAAGCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGCATTCTGGGGTGTACAAGTTGAATCAGAAG
CTCTATTTGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGTGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTCCCGAGGCTATATG
GTACGGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGT
GCTGGGCGGGCCCCACTACATCGTAG
Protein sequenceShow/hide protein sequence
MSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAAGPGGEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHSRIWVQAVNLWFFIRFELHRRNQEHSGVYKLNQK
LYLVSCRVFENEEFDVPRGNRSSLQTGELDKTPEAIWYGVHTGYIPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTS