; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg026762 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026762
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Genome locationscaffold13:24553676..24561080
RNA-Seq ExpressionSpg026762
SyntenySpg026762
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
InterPro domainsIPR017956 - AT hook, DNA-binding motif


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAF3837722.1 unnamed protein product [Rotaria magnacalcarata]7.1e-0432.22Show/hide
Query:  RNL-VSSQGCGAYTQSGKTWGGLGSSRASFQVLYSSRGCVHSVGEN------LGRPRK-FPGFSSSVVVILGVRTLFWGKAWGGLGSSRAFSSSVVVIPG
        RN+ + S   G Y  SG ++GGLGS R+SF  L SS   +  +G +      LG  R  F G  SS   + G+ +   G  +GGLGSS            
Subjt:  RNL-VSSQGCGAYTQSGKTWGGLGSSRASFQVLYSSRGCVHSVGEN------LGRPRK-FPGFSSSVVVILGVRTLFWGKAWGGLGSSRAFSSSVVVIPG

Query:  VRTLFWGKAWGGLGSSRASLQA---SWSSQGCVHSSGEKAWGGLGSSRASLQA----------------SWSSQGGAYTLLGKSLGRHRKFPGLSSSIVV
              G  +GGLGSS  S+     S SS G + SSG   +GGLGSS +S  +                S+ S GG    LG    R R F  L      
Subjt:  VRTLFWGKAWGGLGSSRASLQA---SWSSQGCVHSSGEKAWGGLGSSRASLQA----------------SWSSQGGAYTLLGKSLGRHRKFPGLSSSIVV

Query:  ILGV---RTLFWGKSLGRPRKFPGLSSSIVVIPGVRTLF
          G+   RT F     G    +PGL     V+   +T F
Subjt:  ILGV---RTLFWGKSLGRPRKFPGLSSSIVVIPGVRTLF

TrEMBL top hitse value%identityAlignment
A0A671XSD8 Uncharacterized protein2.1e-0632.02Show/hide
Query:  SCHRQPSTIGRRRPIASVDLRLP-GAIDLCRPTTTVDLQLPIVT-DLRRPLNTGCGRLLLSTSD-DRSLSTST-DRPLTLTSNYRSSSTSVDRPPPSTSN
        S  R  ST   +RP+++  L+ P     L RP +T  LQ P+ T  L RP++T      +STS   R +STS+  RP++ TS +R  STS  + P ST++
Subjt:  SCHRQPSTIGRRRPIASVDLRLP-GAIDLCRPTTTVDLQLPIVT-DLRRPLNTGCGRLLLSTSD-DRSLSTST-DRPLTLTSNYRSSSTSVDRPPPSTSN

Query:  YWS--SSISIDWPPSSTSTTGCSRPLLSTSDDLSLLTLADRPPPTIATINLRLPTFADRSPSSTYEYRSRLTPTVDLQRPAAVDLRRLTATVTSIDRPPS
             S+ S+  P    ST+   RP+ +TS    + T + + P +I ++   + T + + P ST   + R   T  LQRP +    +   + TS+ RP  
Subjt:  YWS--SSISIDWPPSSTSTTGCSRPLLSTSDDLSLLTLADRPPPTIATINLRLPTFADRSPSSTYEYRSRLTPTVDLQRPAAVDLRRLTATVTSIDRPPS

Query:  LTSDYRSSPTSTVDLQRPAAVDLLRATA
        +++     P ST  LQRP +   L+  A
Subjt:  LTSDYRSSPTSTVDLQRPAAVDLLRATA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGCCGGAAATAAAAGAAAAGAAAAAAAAAGAGAGAGAAAGTGGGGTACTAAAAGCTTTAGAAAACATGATAAAGAAAACACAGAAAGACAAAAAGAAAGAAAAGAG
AGAGAGAGAAACAAAGAGAAGGAGAAAGGAAAGAGAAATAGAGAGAAACGAGGAGAGTTCAAAACTCGCCGGAGGTGGATCAGAGATTCAGAAGCTTGCTGGAAAAGTCG
TAGCTAACACCAGAAATAGTTGGAAGAAGTTTTCAGGCAAGAATTCAACTTGGGACTCACCTGACCTTCACGTGACGTCAACGGTGAATTTATTTGAAGGGGAAAGACGT
GGCCTGCAAAATAGGAAAAAACTGAGCACCGATGTGGTACTTGCCACACCGACTCCGATTCTTAAGTTAGTCCGGAGATCTTACATAAGCTCCTCTGAGTTCAAATATTC
CAAGGATGGCCCTAGATGCTTTATCGTGAGGGTCTCTTCTTCATTTGGTTACGGTCGGCTTCGAACTTCGGATGATCAGCTTCAGCCCTCGGAGGGGAGACATATCCCCT
ATTGCTTGTTGTTTAATGTTGGGCCTTTGAGGGCGGAGCTCGACCTTGGTCTCTGGATGGTCGGCCTCGGCCTTGGCATGAGGCCGACCAGCTCCTCTGTCTTATTTGCT
TGTTTGCTTTCCATCCCAAGGGTGTCTGCACTCAGTTGGGGACTTGGGGAGGTTGAGGGCATGCGTCAACCTCTCTGCAGGAATTTGGTCTCTTCCCAGGGGTGCGGTGC
GTACACTCAGTCGGGGAAAACTTGGGGAGGCCTAGGAAGTTCCCGAGCCTCTTTTCAAGTACTGTATTCATCCCGAGGGTGCGTACACTCAGTCGGAGAAAACTTGGGGA
GGCCTAGGAAGTTCCCGGGCTTCTCTTCAAGCGTCGTGGTCATCCTAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCCCGGGCCTTTTCT
TCAAGCGTCGTGGTCATCCCAGGGGTGCGCACACTCTTTTGGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCCCGGGCCTCTCTTCAAGCATCGTGGTCATCCCAGGGGTG
CGTACACTCTTCTGGGGAAAAAGCTTGGGGAGGCCTAGGAAGTTCCCGGGCCTCTCTTCAAGCATCGTGGTCATCCCAGGGGGGTGCGTACACTCTTCTGGGGAAAAGCT
TGGGGAGGCATAGGAAGTTCCCGGGCCTCTCTTCAAGCATCGTAGTCATCCTAGGGGTGCGTACACTCTTCTGGGGAAAAAGCTTGGGGAGGCCTAGGAAGTTCCCGGGC
CTCTCTTCAAGCATCGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAAGCTTGGGAAGGCCTAGGAAGTTCCCGGGCCTCTTCTTCAAGCGTCGTGGTCATCC
CAGGGGTGCGTATACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCCCGGGCCTCTCTTCAAGCATCGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAA
AAAGCTTGGGGAGGCCTAGGAAGTTCCCGGGCCTCTCTTCAAGCATCGTAGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAAGCTTGGGGAGGCCTAGGAAGTTC
CCGGGCCTCTCTTCAAGCATCGTGGTCATCCCAGGGACGGCGCCAACTGTTGATGCCAAAATTTGGCCAAGGGACTCACCTGACCTTCACGTGACATCAACGGTGAATTT
ATTTGAAGGGGAAAGACGTGGCCTGCAAAATAGGAGAAAACTGAGCACCGGTGTGGTACTTGCCACATCGACTCCGATGCTTAAGTTAGTCCGGAGATCCTGCCACCGTC
AACCTTCGACTATCGGCCGTCGTCGACCGATTGCCTCCGTTGACCTTCGACTACCGGGTGCCATCGACCTCTGTCGACCGACCACCACCGTTGACCTCCAACTACCGATC
GTCACCGACCTCCGTCGACCTCTGAATACCGGTTGTGGTCGACTGCTACTGTCGACCTCCGATGACCGGTCGTTGTCAACCTCCACCGACCGACCACTAACATTGACCTC
CAACTATCGGTCGTCGTCGACCTCTGTCGACCGGCCGCCACCGTCCACCTCCAACTATTGGTCGTCGTCGATCTCTATCGACTGGCCACCATCGTCGACCTCCACTACCG
GTTGCAGTCGACCGCTACTGTCAACCTCCGACGACCTGTCACTGTTGACCCTCGCTGACCGGCCTCCACCGACCATCGCCACCATCAACCTTCGATTACCAACCTTCGCC
GACAGGTCGCCATCGTCGACCTATGAATACCGGTCGCGACTGACCCCTACCGTCGACCTCCAACGACCAGCCGCCGTCGACCTCCGTCGACTGACCGCTACCGTCACCTC
CATTGACCGGCCGCCATCGTTGACCTCCGACTATAGGTCGTCGCCGACATCAACCGTCGACCTCCAACGACCGGCCGCCGTCGACCTCCTCCGAGCGACCGCCCGTTGGG
TTTTATGCCTTAAAACTCGTGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGCTGCCGGAAATAAAAGAAAAGAAAAAAAAAGAGAGAGAAAGTGGGGTACTAAAAGCTTTAGAAAACATGATAAAGAAAACACAGAAAGACAAAAAGAAAGAAAAGAG
AGAGAGAGAAACAAAGAGAAGGAGAAAGGAAAGAGAAATAGAGAGAAACGAGGAGAGTTCAAAACTCGCCGGAGGTGGATCAGAGATTCAGAAGCTTGCTGGAAAAGTCG
TAGCTAACACCAGAAATAGTTGGAAGAAGTTTTCAGGCAAGAATTCAACTTGGGACTCACCTGACCTTCACGTGACGTCAACGGTGAATTTATTTGAAGGGGAAAGACGT
GGCCTGCAAAATAGGAAAAAACTGAGCACCGATGTGGTACTTGCCACACCGACTCCGATTCTTAAGTTAGTCCGGAGATCTTACATAAGCTCCTCTGAGTTCAAATATTC
CAAGGATGGCCCTAGATGCTTTATCGTGAGGGTCTCTTCTTCATTTGGTTACGGTCGGCTTCGAACTTCGGATGATCAGCTTCAGCCCTCGGAGGGGAGACATATCCCCT
ATTGCTTGTTGTTTAATGTTGGGCCTTTGAGGGCGGAGCTCGACCTTGGTCTCTGGATGGTCGGCCTCGGCCTTGGCATGAGGCCGACCAGCTCCTCTGTCTTATTTGCT
TGTTTGCTTTCCATCCCAAGGGTGTCTGCACTCAGTTGGGGACTTGGGGAGGTTGAGGGCATGCGTCAACCTCTCTGCAGGAATTTGGTCTCTTCCCAGGGGTGCGGTGC
GTACACTCAGTCGGGGAAAACTTGGGGAGGCCTAGGAAGTTCCCGAGCCTCTTTTCAAGTACTGTATTCATCCCGAGGGTGCGTACACTCAGTCGGAGAAAACTTGGGGA
GGCCTAGGAAGTTCCCGGGCTTCTCTTCAAGCGTCGTGGTCATCCTAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCCCGGGCCTTTTCT
TCAAGCGTCGTGGTCATCCCAGGGGTGCGCACACTCTTTTGGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCCCGGGCCTCTCTTCAAGCATCGTGGTCATCCCAGGGGTG
CGTACACTCTTCTGGGGAAAAAGCTTGGGGAGGCCTAGGAAGTTCCCGGGCCTCTCTTCAAGCATCGTGGTCATCCCAGGGGGGTGCGTACACTCTTCTGGGGAAAAGCT
TGGGGAGGCATAGGAAGTTCCCGGGCCTCTCTTCAAGCATCGTAGTCATCCTAGGGGTGCGTACACTCTTCTGGGGAAAAAGCTTGGGGAGGCCTAGGAAGTTCCCGGGC
CTCTCTTCAAGCATCGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAAGCTTGGGAAGGCCTAGGAAGTTCCCGGGCCTCTTCTTCAAGCGTCGTGGTCATCC
CAGGGGTGCGTATACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCCCGGGCCTCTCTTCAAGCATCGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAA
AAAGCTTGGGGAGGCCTAGGAAGTTCCCGGGCCTCTCTTCAAGCATCGTAGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAAGCTTGGGGAGGCCTAGGAAGTTC
CCGGGCCTCTCTTCAAGCATCGTGGTCATCCCAGGGACGGCGCCAACTGTTGATGCCAAAATTTGGCCAAGGGACTCACCTGACCTTCACGTGACATCAACGGTGAATTT
ATTTGAAGGGGAAAGACGTGGCCTGCAAAATAGGAGAAAACTGAGCACCGGTGTGGTACTTGCCACATCGACTCCGATGCTTAAGTTAGTCCGGAGATCCTGCCACCGTC
AACCTTCGACTATCGGCCGTCGTCGACCGATTGCCTCCGTTGACCTTCGACTACCGGGTGCCATCGACCTCTGTCGACCGACCACCACCGTTGACCTCCAACTACCGATC
GTCACCGACCTCCGTCGACCTCTGAATACCGGTTGTGGTCGACTGCTACTGTCGACCTCCGATGACCGGTCGTTGTCAACCTCCACCGACCGACCACTAACATTGACCTC
CAACTATCGGTCGTCGTCGACCTCTGTCGACCGGCCGCCACCGTCCACCTCCAACTATTGGTCGTCGTCGATCTCTATCGACTGGCCACCATCGTCGACCTCCACTACCG
GTTGCAGTCGACCGCTACTGTCAACCTCCGACGACCTGTCACTGTTGACCCTCGCTGACCGGCCTCCACCGACCATCGCCACCATCAACCTTCGATTACCAACCTTCGCC
GACAGGTCGCCATCGTCGACCTATGAATACCGGTCGCGACTGACCCCTACCGTCGACCTCCAACGACCAGCCGCCGTCGACCTCCGTCGACTGACCGCTACCGTCACCTC
CATTGACCGGCCGCCATCGTTGACCTCCGACTATAGGTCGTCGCCGACATCAACCGTCGACCTCCAACGACCGGCCGCCGTCGACCTCCTCCGAGCGACCGCCCGTTGGG
TTTTATGCCTTAAAACTCGTGGATAG
Protein sequenceShow/hide protein sequence
MLPEIKEKKKKERESGVLKALENMIKKTQKDKKKEKRERETKRRRKEREIERNEESSKLAGGGSEIQKLAGKVVANTRNSWKKFSGKNSTWDSPDLHVTSTVNLFEGERR
GLQNRKKLSTDVVLATPTPILKLVRRSYISSSEFKYSKDGPRCFIVRVSSSFGYGRLRTSDDQLQPSEGRHIPYCLLFNVGPLRAELDLGLWMVGLGLGMRPTSSSVLFA
CLLSIPRVSALSWGLGEVEGMRQPLCRNLVSSQGCGAYTQSGKTWGGLGSSRASFQVLYSSRGCVHSVGENLGRPRKFPGFSSSVVVILGVRTLFWGKAWGGLGSSRAFS
SSVVVIPGVRTLFWGKAWGGLGSSRASLQASWSSQGCVHSSGEKAWGGLGSSRASLQASWSSQGGAYTLLGKSLGRHRKFPGLSSSIVVILGVRTLFWGKSLGRPRKFPG
LSSSIVVIPGVRTLFWGKSLGRPRKFPGLFFKRRGHPRGAYTLLGKSLGRPRKFPGLSSSIVVIPGVRTLFWGKSLGRPRKFPGLSSSIVVIPGVRTLFWGKSLGRPRKF
PGLSSSIVVIPGTAPTVDAKIWPRDSPDLHVTSTVNLFEGERRGLQNRRKLSTGVVLATSTPMLKLVRRSCHRQPSTIGRRRPIASVDLRLPGAIDLCRPTTTVDLQLPI
VTDLRRPLNTGCGRLLLSTSDDRSLSTSTDRPLTLTSNYRSSSTSVDRPPPSTSNYWSSSISIDWPPSSTSTTGCSRPLLSTSDDLSLLTLADRPPPTIATINLRLPTFA
DRSPSSTYEYRSRLTPTVDLQRPAAVDLRRLTATVTSIDRPPSLTSDYRSSPTSTVDLQRPAAVDLLRATARWVLCLKTRG