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Spg026764 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026764
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold13:27541602..27546074
RNA-Seq ExpressionSpg026764
SyntenySpg026764
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025361.1 uncharacterized protein E6C27_scaffold1204G00450 [Cucumis melo var. makuwa]2.4e-2782.76Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
        PL TLSVLRDNDAVVEIELPV DTL   AESF S+SSYF NQVMSGLH V    FNVSVGST IVRGDDVCWLHAVFRAK AGGPGG
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]3.1e-2764Show/hide
Query:  LVGNLVFISSGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIV
        L GN   + SG +      PL TLSVLRDNDAVVEIELPVPDTLPTSAES  S+SS                YF NQVMS LH V    F+V VGSTGIV
Subjt:  LVGNLVFISSGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIV

Query:  RGDDVCWLHAVFRAKLAGGPGGGVT
        RGDDVCWLHAVFRAK  GGPGGGVT
Subjt:  RGDDVCWLHAVFRAKLAGGPGGGVT

KAA0064296.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.5e-2981.32Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTV
        PL T SVL DNDAVVEIEL VPDTLPTSAES+ S+SSYF NQVMSGLH V    FNVSVGSTGIVRGDDVC LH VFRAK AGGPGGGVT+
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTV

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]1.3e-2881.82Show/hide
Query:  LLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV
        L TLSVLRDNDAVVEIELPVPDTLPTS ES  S+SSYF NQVMSGLH V    FN+SV STGIVRGDDVCWLHAVFRAK  GGP GGV
Subjt:  LLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]3.1e-2764Show/hide
Query:  LVGNLVFISSGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIV
        L GN   + SG +      PL TLSVLRDNDAVVEIELPVPDTLPTSAES  S+SS                YF NQVMS LH V    F+V VGSTGIV
Subjt:  LVGNLVFISSGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIV

Query:  RGDDVCWLHAVFRAKLAGGPGGGVT
        RGDDVCWLHAVFRAK  GGPGGGVT
Subjt:  RGDDVCWLHAVFRAKLAGGPGGGVT

TrEMBL top hitse value%identityAlignment
A0A5A7V9N3 Reverse transcriptase1.5e-2764Show/hide
Query:  LVGNLVFISSGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIV
        L GN   + SG +      PL TLSVLRDNDAVVEIELPVPDTLPTSAES  S+SS                YF NQVMS LH V    F+V VGSTGIV
Subjt:  LVGNLVFISSGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIV

Query:  RGDDVCWLHAVFRAKLAGGPGGGVT
        RGDDVCWLHAVFRAK  GGPGGGVT
Subjt:  RGDDVCWLHAVFRAKLAGGPGGGVT

A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein7.3e-3081.32Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTV
        PL T SVL DNDAVVEIEL VPDTLPTSAES+ S+SSYF NQVMSGLH V    FNVSVGSTGIVRGDDVC LH VFRAK AGGPGGGVT+
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTV

A0A5D3BMJ4 Retrotrans_gag domain-containing protein6.2e-2981.82Show/hide
Query:  LLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV
        L TLSVLRDNDAVVEIELPVPDTLPTS ES  S+SSYF NQVMSGLH V    FN+SV STGIVRGDDVCWLHAVFRAK  GGP GGV
Subjt:  LLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV

A0A5D3DIE3 Retrotrans_gag domain-containing protein1.2e-2782.76Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
        PL TLSVLRDNDAVVEIELPV DTL   AESF S+SSYF NQVMSGLH V    FNVSVGST IVRGDDVCWLHAVFRAK AGGPGG
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

A0A5D3DSY7 Putative Retrotransposon protein1.5e-2764Show/hide
Query:  LVGNLVFISSGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIV
        L GN   + SG +      PL TLSVLRDNDAVVEIELPVPDTLPTSAES  S+SS                YF NQVMS LH V    F+V VGSTGIV
Subjt:  LVGNLVFISSGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIV

Query:  RGDDVCWLHAVFRAKLAGGPGGGVT
        RGDDVCWLHAVFRAK  GGPGGGVT
Subjt:  RGDDVCWLHAVFRAKLAGGPGGGVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGGTAACAGAGAAGCTCGAATCTGTGTTGTCTGATTTCGGGGCATTTCTGGACAAATTGGTTGG
GAATCTCGTTTTCATTTCTTCAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAA
CGTCTGCTGAAAGTTTTAGATCAAGCTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAACGTTTCAGTAGGGTCAACAGGG
ATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAGTTAGACTAGGGCAAGTGGGAGAAATACT
CCCACAAGTCGTTATTGGCCCGAAGAATAGTAGGGAAGACACTATCGGTTGTCCAGAGTTGATTGGAGAAGGAAAACGGTACAAGGAGTTCCATCCATTTGAGCTACAAA
AAGGAGCAAATTATGGACTTTTGGTGGAAAAAGGCCCTAAAATGAGCTATCCAAGCCCAAATTTCCATACATGGGTCAAAGGGGGAGCCCAAGAAGTCAACTATTCAAAG
ATGATCCAAAAAGAAATGAAGAAAGACCCAAATCCAAGCCCAAATCCGCGTCAGCCGGTTCTGGAATCCGCAAGCGTCGAGACGTTGTGGGGACAGCGTCACGACGCTGC
CCCATTTCTTGGCCAGCAAGTTGGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGGTAACAGAGAAGCTCGAATCTGTGTTGTCTGATTTCGGGGCATTTCTGGACAAATTGGTTGG
GAATCTCGTTTTCATTTCTTCAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAA
CGTCTGCTGAAAGTTTTAGATCAAGCTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAACGTTTCAGTAGGGTCAACAGGG
ATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAGTTAGACTAGGGCAAGTGGGAGAAATACT
CCCACAAGTCGTTATTGGCCCGAAGAATAGTAGGGAAGACACTATCGGTTGTCCAGAGTTGATTGGAGAAGGAAAACGGTACAAGGAGTTCCATCCATTTGAGCTACAAA
AAGGAGCAAATTATGGACTTTTGGTGGAAAAAGGCCCTAAAATGAGCTATCCAAGCCCAAATTTCCATACATGGGTCAAAGGGGGAGCCCAAGAAGTCAACTATTCAAAG
ATGATCCAAAAAGAAATGAAGAAAGACCCAAATCCAAGCCCAAATCCGCGTCAGCCGGTTCTGGAATCCGCAAGCGTCGAGACGTTGTGGGGACAGCGTCACGACGCTGC
CCCATTTCTTGGCCAGCAAGTTGGGTGA
Protein sequenceShow/hide protein sequence
MENRAQDFRAKQEDLWVTEKLESVLSDFGAFLDKLVGNLVFISSGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSYFPNQVMSGLHHVYVERFNVSVGSTG
IVRGDDVCWLHAVFRAKLAGGPGGGVTVRLGQVGEILPQVVIGPKNSREDTIGCPELIGEGKRYKEFHPFELQKGANYGLLVEKGPKMSYPSPNFHTWVKGGAQEVNYSK
MIQKEMKKDPNPSPNPRQPVLESASVETLWGQRHDAAPFLGQQVG