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Spg026773 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026773
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold13:23446707..23447578
RNA-Seq ExpressionSpg026773
SyntenySpg026773
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0008233 - peptidase activity (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025361.1 uncharacterized protein E6C27_scaffold1204G00450 [Cucumis melo var. makuwa]1.8e-1759.8Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTW-----------FNVSIGSTGIVRGDDVCWLHAVFRAKLAGGP
        MTEILS RLYGTVCTQ                 VEIELPV DTL   AES  S+SS +           FNVS+GST IVRGDDVCWLHAVFRAK AGGP
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTW-----------FNVSIGSTGIVRGDDVCWLHAVFRAKLAGGP

Query:  GG
        GG
Subjt:  GG

KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]2.1e-2161Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSIGSTGIVRGDDVCWLHAVFRAKLAGGPG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ +TW                           FNVS+GSTGIVRGDDVCWLHAVFR K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSIGSTGIVRGDDVCWLHAVFRAKLAGGPG

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]6.1e-2162.63Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVSI--------GSTGIVRGDDVCWLHAVFRAKLAGGPGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW  + +           GIVR DDVCWLHAVFRAK AGGPGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVSI--------GSTGIVRGDDVCWLHAVFRAKLAGGPGG

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]1.5e-1959.8Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTW-----------FNVSIGSTGIVRGDDVCWLHAVFRAKLAGGP
        MTEILS RL+GTVCTQ                 VEIELPVPDTLPTS ESS S+SS +           FN+S+ STGIVRGDDVCWLHAVFRAK  GGP
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTW-----------FNVSIGSTGIVRGDDVCWLHAVFRAKLAGGP

Query:  GG
         G
Subjt:  GG

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]6.1e-2162.63Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVSI--------GSTGIVRGDDVCWLHAVFRAKLAGGPGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW  + +           GIVR DDVCWLHAVFRAK AGGPGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVSI--------GSTGIVRGDDVCWLHAVFRAKLAGGPGG

TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein1.0e-2161Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSIGSTGIVRGDDVCWLHAVFRAKLAGGPG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ +TW                           FNVS+GSTGIVRGDDVCWLHAVFR K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSIGSTGIVRGDDVCWLHAVFRAKLAGGPG

A0A5A7VMG9 Reverse transcriptase3.0e-2162.63Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVSI--------GSTGIVRGDDVCWLHAVFRAKLAGGPGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW  + +           GIVR DDVCWLHAVFRAK AGGPGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVSI--------GSTGIVRGDDVCWLHAVFRAKLAGGPGG

A0A5D3BMJ4 Retrotrans_gag domain-containing protein7.3e-2059.8Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTW-----------FNVSIGSTGIVRGDDVCWLHAVFRAKLAGGP
        MTEILS RL+GTVCTQ                 VEIELPVPDTLPTS ESS S+SS +           FN+S+ STGIVRGDDVCWLHAVFRAK  GGP
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTW-----------FNVSIGSTGIVRGDDVCWLHAVFRAKLAGGP

Query:  GG
         G
Subjt:  GG

A0A5D3DIE3 Retrotrans_gag domain-containing protein8.9e-1859.8Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTW-----------FNVSIGSTGIVRGDDVCWLHAVFRAKLAGGP
        MTEILS RLYGTVCTQ                 VEIELPV DTL   AES  S+SS +           FNVS+GST IVRGDDVCWLHAVFRAK AGGP
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTW-----------FNVSIGSTGIVRGDDVCWLHAVFRAKLAGGP

Query:  GG
        GG
Subjt:  GG

A0A5D3DX39 Reverse transcriptase3.0e-2162.63Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVSI--------GSTGIVRGDDVCWLHAVFRAKLAGGPGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW  + +           GIVR DDVCWLHAVFRAK AGGPGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVSI--------GSTGIVRGDDVCWLHAVFRAKLAGGPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTACGTGGTTCAACGTTTCAATAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAG
GG
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTACGTGGTTCAACGTTTCAATAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAG
GG
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWFNVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGG