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Spg026776 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026776
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold13:25035634..25037760
RNA-Seq ExpressionSpg026776
SyntenySpg026776
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]6.8e-2343.52Show/hide
Query:  MQSQPLQNLGA---------KLSTSEHRIFEQTRRISGVLWCFEHS----GVYKSNQKLYLV-SCRV--FDNEEFDVPRGNRSSLQTGELDMT-------
        MQSQPLQNLGA          LS  E           G    F  +     ++KSNQKLYLV   R+   +N +  +PRGNR SLQT ELD T       
Subjt:  MQSQPLQNLGA---------KLSTSEHRIFEQTRRISGVLWCFEHS----GVYKSNQKLYLV-SCRV--FDNEEFDVPRGNRSSLQTGELDMT-------

Query:  --------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYY-------------VNVLFNVQEAQRVSLEEEDVRWLHTIFRAKLVGGPGG
                V IELPVPD LPTSAESS S+S+TW+ELY ESV+              ++++FNV       +  +DV WLH +FRAK VGGPGG
Subjt:  --------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYY-------------VNVLFNVQEAQRVSLEEEDVRWLHTIFRAKLVGGPGG

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]6.2e-2445.69Show/hide
Query:  MQSQPLQNLGA--KLSTSEHRIFEQTRRISGVLWCFEHSGVYKSNQKLYLVSCRVFDNEEFDVP-RGNRSSLQTGELDMT-----------------VEI
        MQSQPLQNLGA   L T            S  L   E   V+KSNQKLYL       + ++DV  RGNRSSLQ+GELD T                 VEI
Subjt:  MQSQPLQNLGA--KLSTSEHRIFEQTRRISGVLWCFEHSGVYKSNQKLYLVSCRVFDNEEFDVP-RGNRSSLQTGELDMT-----------------VEI

Query:  ELPVPDTLPTSAESSRSSSNTWVELYIESV------YYVN-------VLFNVQEAQRVSLEEEDVRWLHTIFRAKLVGGPGGDAGSVQIELAEYGPS
        ELPVPDTLPTSAESS S+S+TW+ELY ESV      Y+ N       ++F+V       +  +DV WLH +FRAK VGGPGG  G   +E   + P+
Subjt:  ELPVPDTLPTSAESSRSSSNTWVELYIESV------YYVN-------VLFNVQEAQRVSLEEEDVRWLHTIFRAKLVGGPGGDAGSVQIELAEYGPS

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]3.1e-2338.46Show/hide
Query:  MQSQPLQNLGAKLSTSEHRIFEQTRRISGVLWCFEHSGVYKSNQKLYLV--------------------------------SCRVFDNEEFDVPRGNRSS
        MQSQPLQNLGA ++    R+  +               V+KSNQKLYL+                                  R+ + E  ++PRGNRSS
Subjt:  MQSQPLQNLGAKLSTSEHRIFEQTRRISGVLWCFEHSGVYKSNQKLYLV--------------------------------SCRVFDNEEFDVPRGNRSS

Query:  LQTGELDMT-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFNVQEAQRVS----------LEEEDVRWLHTIFRA
        LQTGELD T                 VEIELPVPDTLPTSAES  S+S+TW+ELY E V+   + +   + +  S          +  +DV WLHT+FRA
Subjt:  LQTGELDMT-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFNVQEAQRVS----------LEEEDVRWLHTIFRA

Query:  KLVGGPGG
        K+ GGPGG
Subjt:  KLVGGPGG

TYK07530.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.4e-2240.86Show/hide
Query:  MQSQPLQNLGAKLST----SEHRIFEQTRRISGVLWCFEHSGVYKSNQKLYL---VSCRVFDNEEFDVPRGNRSSLQTGELDMT----------------
        MQSQPLQNLGA ++     S    F +  R            V++SN KLYL   +  R+ + E  ++PRGNR SLQTGELD T                
Subjt:  MQSQPLQNLGAKLST----SEHRIFEQTRRISGVLWCFEHSGVYKSNQKLYL---VSCRVFDNEEFDVPRGNRSSLQTGELDMT----------------

Query:  -VEIELPVPDTLPTSAESSRSSSNTWVELYIESVY---YVNVLFNVQEAQRVS----------LEEEDVRWLHTIFRAKLVGGPGG
         VEIELPV D LPTSAES  S+S+TW+ELY  SV+   +V + +   + +  S          +  +DV WLH +F+AK VGGP G
Subjt:  -VEIELPVPDTLPTSAESSRSSSNTWVELYIESVY---YVNVLFNVQEAQRVS----------LEEEDVRWLHTIFRAKLVGGPGG

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]6.2e-2445.69Show/hide
Query:  MQSQPLQNLGA--KLSTSEHRIFEQTRRISGVLWCFEHSGVYKSNQKLYLVSCRVFDNEEFDVP-RGNRSSLQTGELDMT-----------------VEI
        MQSQPLQNLGA   L T            S  L   E   V+KSNQKLYL       + ++DV  RGNRSSLQ+GELD T                 VEI
Subjt:  MQSQPLQNLGA--KLSTSEHRIFEQTRRISGVLWCFEHSGVYKSNQKLYLVSCRVFDNEEFDVP-RGNRSSLQTGELDMT-----------------VEI

Query:  ELPVPDTLPTSAESSRSSSNTWVELYIESV------YYVN-------VLFNVQEAQRVSLEEEDVRWLHTIFRAKLVGGPGGDAGSVQIELAEYGPS
        ELPVPDTLPTSAESS S+S+TW+ELY ESV      Y+ N       ++F+V       +  +DV WLH +FRAK VGGPGG  G   +E   + P+
Subjt:  ELPVPDTLPTSAESSRSSSNTWVELYIESV------YYVN-------VLFNVQEAQRVSLEEEDVRWLHTIFRAKLVGGPGGDAGSVQIELAEYGPS

TrEMBL top hitse value%identityAlignment
A0A5A7UT17 CCHC-type domain-containing protein3.3e-2343.52Show/hide
Query:  MQSQPLQNLGA---------KLSTSEHRIFEQTRRISGVLWCFEHS----GVYKSNQKLYLV-SCRV--FDNEEFDVPRGNRSSLQTGELDMT-------
        MQSQPLQNLGA          LS  E           G    F  +     ++KSNQKLYLV   R+   +N +  +PRGNR SLQT ELD T       
Subjt:  MQSQPLQNLGA---------KLSTSEHRIFEQTRRISGVLWCFEHS----GVYKSNQKLYLV-SCRV--FDNEEFDVPRGNRSSLQTGELDMT-------

Query:  --------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYY-------------VNVLFNVQEAQRVSLEEEDVRWLHTIFRAKLVGGPGG
                V IELPVPD LPTSAESS S+S+TW+ELY ESV+              ++++FNV       +  +DV WLH +FRAK VGGPGG
Subjt:  --------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYY-------------VNVLFNVQEAQRVSLEEEDVRWLHTIFRAKLVGGPGG

A0A5A7V9N3 Reverse transcriptase3.0e-2445.69Show/hide
Query:  MQSQPLQNLGA--KLSTSEHRIFEQTRRISGVLWCFEHSGVYKSNQKLYLVSCRVFDNEEFDVP-RGNRSSLQTGELDMT-----------------VEI
        MQSQPLQNLGA   L T            S  L   E   V+KSNQKLYL       + ++DV  RGNRSSLQ+GELD T                 VEI
Subjt:  MQSQPLQNLGA--KLSTSEHRIFEQTRRISGVLWCFEHSGVYKSNQKLYLVSCRVFDNEEFDVP-RGNRSSLQTGELDMT-----------------VEI

Query:  ELPVPDTLPTSAESSRSSSNTWVELYIESV------YYVN-------VLFNVQEAQRVSLEEEDVRWLHTIFRAKLVGGPGGDAGSVQIELAEYGPS
        ELPVPDTLPTSAESS S+S+TW+ELY ESV      Y+ N       ++F+V       +  +DV WLH +FRAK VGGPGG  G   +E   + P+
Subjt:  ELPVPDTLPTSAESSRSSSNTWVELYIESV------YYVN-------VLFNVQEAQRVSLEEEDVRWLHTIFRAKLVGGPGGDAGSVQIELAEYGPS

A0A5A7VIY9 Uncharacterized protein1.5e-2338.46Show/hide
Query:  MQSQPLQNLGAKLSTSEHRIFEQTRRISGVLWCFEHSGVYKSNQKLYLV--------------------------------SCRVFDNEEFDVPRGNRSS
        MQSQPLQNLGA ++    R+  +               V+KSNQKLYL+                                  R+ + E  ++PRGNRSS
Subjt:  MQSQPLQNLGAKLSTSEHRIFEQTRRISGVLWCFEHSGVYKSNQKLYLV--------------------------------SCRVFDNEEFDVPRGNRSS

Query:  LQTGELDMT-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFNVQEAQRVS----------LEEEDVRWLHTIFRA
        LQTGELD T                 VEIELPVPDTLPTSAES  S+S+TW+ELY E V+   + +   + +  S          +  +DV WLHT+FRA
Subjt:  LQTGELDMT-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFNVQEAQRVS----------LEEEDVRWLHTIFRA

Query:  KLVGGPGG
        K+ GGPGG
Subjt:  KLVGGPGG

A0A5D3C867 DNA/RNA polymerases superfamily protein2.1e-2240.86Show/hide
Query:  MQSQPLQNLGAKLST----SEHRIFEQTRRISGVLWCFEHSGVYKSNQKLYL---VSCRVFDNEEFDVPRGNRSSLQTGELDMT----------------
        MQSQPLQNLGA ++     S    F +  R            V++SN KLYL   +  R+ + E  ++PRGNR SLQTGELD T                
Subjt:  MQSQPLQNLGAKLST----SEHRIFEQTRRISGVLWCFEHSGVYKSNQKLYL---VSCRVFDNEEFDVPRGNRSSLQTGELDMT----------------

Query:  -VEIELPVPDTLPTSAESSRSSSNTWVELYIESVY---YVNVLFNVQEAQRVS----------LEEEDVRWLHTIFRAKLVGGPGG
         VEIELPV D LPTSAES  S+S+TW+ELY  SV+   +V + +   + +  S          +  +DV WLH +F+AK VGGP G
Subjt:  -VEIELPVPDTLPTSAESSRSSSNTWVELYIESVY---YVNVLFNVQEAQRVS----------LEEEDVRWLHTIFRAKLVGGPGG

A0A5D3DSY7 Putative Retrotransposon protein3.0e-2445.69Show/hide
Query:  MQSQPLQNLGA--KLSTSEHRIFEQTRRISGVLWCFEHSGVYKSNQKLYLVSCRVFDNEEFDVP-RGNRSSLQTGELDMT-----------------VEI
        MQSQPLQNLGA   L T            S  L   E   V+KSNQKLYL       + ++DV  RGNRSSLQ+GELD T                 VEI
Subjt:  MQSQPLQNLGA--KLSTSEHRIFEQTRRISGVLWCFEHSGVYKSNQKLYLVSCRVFDNEEFDVP-RGNRSSLQTGELDMT-----------------VEI

Query:  ELPVPDTLPTSAESSRSSSNTWVELYIESV------YYVN-------VLFNVQEAQRVSLEEEDVRWLHTIFRAKLVGGPGGDAGSVQIELAEYGPS
        ELPVPDTLPTSAESS S+S+TW+ELY ESV      Y+ N       ++F+V       +  +DV WLH +FRAK VGGPGG  G   +E   + P+
Subjt:  ELPVPDTLPTSAESSRSSSNTWVELYIESV------YYVN-------VLFNVQEAQRVSLEEEDVRWLHTIFRAKLVGGPGGDAGSVQIELAEYGPS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAAACTGTCAACCTCTGAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTC
TGGAGTGTACAAGTCGAATCAGAAGCTCTATTTGGTAAGTTGTAGAGTGTTCGACAATGAAGAGTTTGATGTGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAAC
TAGATATGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAGATCAAGCTCCAATACGTGGGTGGAGTTGTATATTGAGTCTGTC
TATTATGTAAATGTTTTGTTCAACGTTCAGGAGGCTCAGCGGGTATCGTTAGAGGAGGAGGATGTCCGTTGGCTTCACACCATCTTTCGGGCTAAGCTAGTAGGTGGTCC
GGGAGGGGATGCTGGGTCAGTTCAGATAGAACTAGCGGAGTATGGTCCGAGTGTTGTTGAGAGTGAGTCCAATCAGGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAAACTGTCAACCTCTGAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTC
TGGAGTGTACAAGTCGAATCAGAAGCTCTATTTGGTAAGTTGTAGAGTGTTCGACAATGAAGAGTTTGATGTGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAAC
TAGATATGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAGATCAAGCTCCAATACGTGGGTGGAGTTGTATATTGAGTCTGTC
TATTATGTAAATGTTTTGTTCAACGTTCAGGAGGCTCAGCGGGTATCGTTAGAGGAGGAGGATGTCCGTTGGCTTCACACCATCTTTCGGGCTAAGCTAGTAGGTGGTCC
GGGAGGGGATGCTGGGTCAGTTCAGATAGAACTAGCGGAGTATGGTCCGAGTGTTGTTGAGAGTGAGTCCAATCAGGACTAG
Protein sequenceShow/hide protein sequence
MQSQPLQNLGAKLSTSEHRIFEQTRRISGVLWCFEHSGVYKSNQKLYLVSCRVFDNEEFDVPRGNRSSLQTGELDMTVEIELPVPDTLPTSAESSRSSSNTWVELYIESV
YYVNVLFNVQEAQRVSLEEEDVRWLHTIFRAKLVGGPGGDAGSVQIELAEYGPSVVESESNQD