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Spg026780 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026780
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold13:23191161..23193323
RNA-Seq ExpressionSpg026780
SyntenySpg026780
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.8e-2958.57Show/hide
Query:  TVNLWFFIRFELHRRNQEVRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSNTWVEL-----YIESVYY-------
        TVNLW F+ F L       RPRGNR+SLQTGELDKT                 VEIELPVPDTLPTSAESS S+S+TW+EL     ++E  YY       
Subjt:  TVNLWFFIRFELHRRNQEVRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSNTWVEL-----YIESVYY-------

Query:  -VNVLFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV
         ++++FNVSVGST IVRGD+VCWLHAVF AK AGGPGGGV
Subjt:  -VNVLFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV

KAA0053276.1 uncharacterized protein E6C27_scaffold102G00750 [Cucumis melo var. makuwa]2.1e-3048.94Show/hide
Query:  KPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIRFELHRRNQEVRPRGNRSSLQTGELDKT-
        KPTTD  IFQ NFI FLHHF  KLSE+F+ERVK EEEEEFRGLRLKK+ K   ++   +    T+NLW F+   L      +RPRGNR SLQTG+LDKT 
Subjt:  KPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIRFELHRRNQEVRPRGNRSSLQTGELDKT-

Query:  ---------------------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYY-------------VNVLFNVSVGSTG
                                   VEIELP+PDTLPT AES  S+S+TW+ELY ESV+              ++++FN+SVG TG
Subjt:  ---------------------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYY-------------VNVLFNVSVGSTG

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]8.1e-3055.63Show/hide
Query:  ELHRRNQ------EVR-----------PRGNRSSLQTGELDKT---------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYY-------
        E+H+ NQ      EVR           PRGNR SLQT ELDKT               V IELPVPD LPTSAESS S+S+TW+ELY ESV+        
Subjt:  ELHRRNQ------EVR-----------PRGNRSSLQTGELDKT---------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYY-------

Query:  ------VNVLFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTTWYQS
              ++++FNVSVGSTGIVRGDDVCWLHAVFRAK  GGPGGGVTTW  S
Subjt:  ------VNVLFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTTWYQS

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]1.9e-3943.43Show/hide
Query:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIW----------------------VQTVNLWFFIRFELHRRNQ-EVRP
        +FQPNFISFLHHFP KLSEHFEERVK EEEEEFRGLRLKKIGKSSCKA+HCRIW                      VQ  N   +   E  +  + +V P
Subjt:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIW----------------------VQTVNLWFFIRFELHRRNQ-EVRP

Query:  RGNRSSLQTGELDK-------------------------------------------------------------------------------TVEIELP
        RGNRSSLQTG+LDK                                                                               ++EIEL 
Subjt:  RGNRSSLQTGELDK-------------------------------------------------------------------------------TVEIELP

Query:  VPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFNVS-----VGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
        VPDTLPTSAESS S+S+TW+E   E  Y  + +   S     V S GIVR +DVCWLHAVFRAK+AGG GGGVT
Subjt:  VPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFNVS-----VGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]7.8e-3361.03Show/hide
Query:  ELHRRNQE--VRPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSNTWVELYIESVYY-------------VNVLFNVSV
        E+H+ NQ+  + PRGNR SLQTGELDKTV                IELPVPDTLPTSAESS S+S+TW+ELY ESV+              ++++FNVSV
Subjt:  ELHRRNQE--VRPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSNTWVELYIESVYY-------------VNVLFNVSV

Query:  GSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTTWYQS
        GSTGIVRGDDVCWLHAVFRAK  GGPGGGVTTW  S
Subjt:  GSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTTWYQS

TrEMBL top hitse value%identityAlignment
A0A5A7U9X4 DNA/RNA polymerases superfamily protein8.7e-3058.57Show/hide
Query:  TVNLWFFIRFELHRRNQEVRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSNTWVEL-----YIESVYY-------
        TVNLW F+ F L       RPRGNR+SLQTGELDKT                 VEIELPVPDTLPTSAESS S+S+TW+EL     ++E  YY       
Subjt:  TVNLWFFIRFELHRRNQEVRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSNTWVEL-----YIESVYY-------

Query:  -VNVLFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV
         ++++FNVSVGST IVRGD+VCWLHAVF AK AGGPGGGV
Subjt:  -VNVLFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV

A0A5A7UGD0 Uncharacterized protein1.0e-3048.94Show/hide
Query:  KPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIRFELHRRNQEVRPRGNRSSLQTGELDKT-
        KPTTD  IFQ NFI FLHHF  KLSE+F+ERVK EEEEEFRGLRLKK+ K   ++   +    T+NLW F+   L      +RPRGNR SLQTG+LDKT 
Subjt:  KPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIRFELHRRNQEVRPRGNRSSLQTGELDKT-

Query:  ---------------------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYY-------------VNVLFNVSVGSTG
                                   VEIELP+PDTLPT AES  S+S+TW+ELY ESV+              ++++FN+SVG TG
Subjt:  ---------------------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYY-------------VNVLFNVSVGSTG

A0A5A7UT17 CCHC-type domain-containing protein3.9e-3055.63Show/hide
Query:  ELHRRNQ------EVR-----------PRGNRSSLQTGELDKT---------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYY-------
        E+H+ NQ      EVR           PRGNR SLQT ELDKT               V IELPVPD LPTSAESS S+S+TW+ELY ESV+        
Subjt:  ELHRRNQ------EVR-----------PRGNRSSLQTGELDKT---------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYY-------

Query:  ------VNVLFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTTWYQS
              ++++FNVSVGSTGIVRGDDVCWLHAVFRAK  GGPGGGVTTW  S
Subjt:  ------VNVLFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTTWYQS

A0A5D3CAC6 Uncharacterized protein9.3e-4043.43Show/hide
Query:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIW----------------------VQTVNLWFFIRFELHRRNQ-EVRP
        +FQPNFISFLHHFP KLSEHFEERVK EEEEEFRGLRLKKIGKSSCKA+HCRIW                      VQ  N   +   E  +  + +V P
Subjt:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIW----------------------VQTVNLWFFIRFELHRRNQ-EVRP

Query:  RGNRSSLQTGELDK-------------------------------------------------------------------------------TVEIELP
        RGNRSSLQTG+LDK                                                                               ++EIEL 
Subjt:  RGNRSSLQTGELDK-------------------------------------------------------------------------------TVEIELP

Query:  VPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFNVS-----VGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
        VPDTLPTSAESS S+S+TW+E   E  Y  + +   S     V S GIVR +DVCWLHAVFRAK+AGG GGGVT
Subjt:  VPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFNVS-----VGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

A0A5D3CJX3 CCHC-type domain-containing protein3.8e-3361.03Show/hide
Query:  ELHRRNQE--VRPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSNTWVELYIESVYY-------------VNVLFNVSV
        E+H+ NQ+  + PRGNR SLQTGELDKTV                IELPVPDTLPTSAESS S+S+TW+ELY ESV+              ++++FNVSV
Subjt:  ELHRRNQE--VRPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSNTWVELYIESVYY-------------VNVLFNVSV

Query:  GSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTTWYQS
        GSTGIVRGDDVCWLHAVFRAK  GGPGGGVTTW  S
Subjt:  GSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTTWYQS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAGCGCAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTCATTTCTCCATCATTTTCCATTCAAACTTTCAGAGCACTTTGAGGAGAGAGTGAA
GGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTT
TTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGTCAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGTG
CCTGATACACTGCCAACGTCTGCTGAAAGCTCCAGATCAAGCTCCAATACGTGGGTGGAGTTGTATATTGAGTCTGTCTATTATGTAAATGTTTTGTTCAACGTTTCAGT
AGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAACTTGGTATCAGAGTA
TGGTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACAGCGCAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTCATTTCTCCATCATTTTCCATTCAAACTTTCAGAGCACTTTGAGGAGAGAGTGAA
GGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTT
TTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGTCAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGTG
CCTGATACACTGCCAACGTCTGCTGAAAGCTCCAGATCAAGCTCCAATACGTGGGTGGAGTTGTATATTGAGTCTGTCTATTATGTAAATGTTTTGTTCAACGTTTCAGT
AGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAACTTGGTATCAGAGTA
TGGTCTGA
Protein sequenceShow/hide protein sequence
MDSAKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIRFELHRRNQEVRPRGNRSSLQTGELDKTVEIELPV
PDTLPTSAESSRSSSNTWVELYIESVYYVNVLFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTTWYQSMV