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Spg026798 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026798
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold13:23623033..23629577
RNA-Seq ExpressionSpg026798
SyntenySpg026798
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]2.0e-1252.48Show/hide
Query:  MTEILSPRLYGT---------------------VEIELPVPDTLPTSAESSRSSSSSTFQ--------EGQWVS--LEEDDVRWLHAIFRTKLAGGLGGG
        MTEILSPRLYGT                     VEIELPVPDTLPTSAESS S+SS+  +        E  W++  + EDDV WLHA+FR K AGG GGG
Subjt:  MTEILSPRLYGT---------------------VEIELPVPDTLPTSAESSRSSSSSTFQ--------EGQWVS--LEEDDVRWLHAIFRTKLAGGLGGG

Query:  V
        V
Subjt:  V

TYK00848.1 gag/pol protein [Cucumis melo var. makuwa]3.2e-1052.58Show/hide
Query:  FSEISIDYMTEILSPRLYG---------------------TVEIELPVPDTLPTSAESSRSSSSSTFQEGQWVSLEEDDVRWLHAIFRTKLAGGLGG
        F+E+SI YMTEILS RLYG                      VEIEL VPDTLPTSAES RS+S S         +  DDV WLHAIFR K AGG GG
Subjt:  FSEISIDYMTEILSPRLYG---------------------TVEIELPVPDTLPTSAESSRSSSSSTFQEGQWVSLEEDDVRWLHAIFRTKLAGGLGG

TYK01784.1 hypothetical protein E5676_scaffold113G00120 [Cucumis melo var. makuwa]1.6e-0950.52Show/hide
Query:  ISIDYMTEILSPRLYGT---------------------VEIELPVPDTLPTSAESSRSSSSSTFQEGQWVSLEEDDVRWLHAIFRTKLAGGLGGGVT
        +SIDY+TEILS RLYGT                     VEIEL VPDTLPTSAESS S S S         +  DDV WLH +FR K  GG G GVT
Subjt:  ISIDYMTEILSPRLYGT---------------------VEIELPVPDTLPTSAESSRSSSSSTFQEGQWVSLEEDDVRWLHAIFRTKLAGGLGGGVT

TYK11693.1 gag protease polyprotein [Cucumis melo var. makuwa]1.2e-0950Show/hide
Query:  FSEISIDYMTEILSPRLYGT---------------------VEIELPVPDTLPTSAESSRSSSSSTFQEGQWVSLEEDDVRWLHAIFRTKLAGG
        F+E+SIDY+TEILS RLYGT                     VEIELPVPDTLPTSAESS+S+S S         +  DDV WLH +FR K   G
Subjt:  FSEISIDYMTEILSPRLYGT---------------------VEIELPVPDTLPTSAESSRSSSSSTFQEGQWVSLEEDDVRWLHAIFRTKLAGG

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]2.0e-1252.48Show/hide
Query:  MTEILSPRLYGT---------------------VEIELPVPDTLPTSAESSRSSSSSTFQ--------EGQWVS--LEEDDVRWLHAIFRTKLAGGLGGG
        MTEILSPRLYGT                     VEIELPVPDTLPTSAESS S+SS+  +        E  W++  + EDDV WLHA+FR K AGG GGG
Subjt:  MTEILSPRLYGT---------------------VEIELPVPDTLPTSAESSRSSSSSTFQ--------EGQWVS--LEEDDVRWLHAIFRTKLAGGLGGG

Query:  V
        V
Subjt:  V

TrEMBL top hitse value%identityAlignment
A0A5A7UCL6 Reverse transcriptase domain-containing protein7.7e-1050.52Show/hide
Query:  ISIDYMTEILSPRLYGT---------------------VEIELPVPDTLPTSAESSRSSSSSTFQEGQWVSLEEDDVRWLHAIFRTKLAGGLGGGVT
        +SIDY+TEILS RLYGT                     VEIEL VPDTLPTSAESS S S S         +  DDV WLH +FR K  GG G GVT
Subjt:  ISIDYMTEILSPRLYGT---------------------VEIELPVPDTLPTSAESSRSSSSSTFQEGQWVSLEEDDVRWLHAIFRTKLAGGLGGGVT

A0A5A7VMG9 Reverse transcriptase9.8e-1352.48Show/hide
Query:  MTEILSPRLYGT---------------------VEIELPVPDTLPTSAESSRSSSSSTFQ--------EGQWVS--LEEDDVRWLHAIFRTKLAGGLGGG
        MTEILSPRLYGT                     VEIELPVPDTLPTSAESS S+SS+  +        E  W++  + EDDV WLHA+FR K AGG GGG
Subjt:  MTEILSPRLYGT---------------------VEIELPVPDTLPTSAESSRSSSSSTFQ--------EGQWVS--LEEDDVRWLHAIFRTKLAGGLGGG

Query:  V
        V
Subjt:  V

A0A5D3BP54 Gag/pol protein1.6e-1052.58Show/hide
Query:  FSEISIDYMTEILSPRLYG---------------------TVEIELPVPDTLPTSAESSRSSSSSTFQEGQWVSLEEDDVRWLHAIFRTKLAGGLGG
        F+E+SI YMTEILS RLYG                      VEIEL VPDTLPTSAES RS+S S         +  DDV WLHAIFR K AGG GG
Subjt:  FSEISIDYMTEILSPRLYG---------------------TVEIELPVPDTLPTSAESSRSSSSSTFQEGQWVSLEEDDVRWLHAIFRTKLAGGLGG

A0A5D3CIF4 Gag protease polyprotein5.9e-1050Show/hide
Query:  FSEISIDYMTEILSPRLYGT---------------------VEIELPVPDTLPTSAESSRSSSSSTFQEGQWVSLEEDDVRWLHAIFRTKLAGG
        F+E+SIDY+TEILS RLYGT                     VEIELPVPDTLPTSAESS+S+S S         +  DDV WLH +FR K   G
Subjt:  FSEISIDYMTEILSPRLYGT---------------------VEIELPVPDTLPTSAESSRSSSSSTFQEGQWVSLEEDDVRWLHAIFRTKLAGG

A0A5D3DX39 Reverse transcriptase9.8e-1352.48Show/hide
Query:  MTEILSPRLYGT---------------------VEIELPVPDTLPTSAESSRSSSSSTFQ--------EGQWVS--LEEDDVRWLHAIFRTKLAGGLGGG
        MTEILSPRLYGT                     VEIELPVPDTLPTSAESS S+SS+  +        E  W++  + EDDV WLHA+FR K AGG GGG
Subjt:  MTEILSPRLYGT---------------------VEIELPVPDTLPTSAESSRSSSSSTFQ--------EGQWVS--LEEDDVRWLHAIFRTKLAGGLGGG

Query:  V
        V
Subjt:  V

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATGGGCGTTTCGAGGTTCTCCTCTTGTCGTCGCACGTTTGCTTCAGCTTCGTGGGTAAGTCCCCAGGTAGAGGTGTTCCCTACGGTAAATCCCCAGGAAAAGGTGT
TCCCAATGGTCATCTTAAATCGGGTTTTCCTGTTGTGGCACCGGTGGAACTGGAGGAACAGGAGGAATTCTCCCGCCATTCTTCTCCCTTCTATAATCTTGTGGATCAAC
TTGAGGATCGACTCCAGGAGGTTCCATTGGAAACTCTTGAATGTAAGATGCTTCCTCTAGAAATTCCTGTGCGCGTCTCTATTCTTTCCTTTGATGACGAAAGGAGAAAG
ATAAAGGGCAGAAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCATTTCTGGACAAATTCGTTGGGAATCCCGTTTTAAATGCTTCAGGGATAACGATAAGCAGGC
ATGTTCTAATGTTTTCATGGGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTAGAGATCGAGCTCCCGGTGCCTGATA
CACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCTACGTTTCAGGAGGGTCAATGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCATGCCATCTTC
CGGACTAAGCTAGCAGGTGGTCTGGGAGGGGGTGTGACACGTTATGCACATTTCAGTGACTCGACTCTGACATAG
mRNA sequenceShow/hide mRNA sequence
ATGCATGGGCGTTTCGAGGTTCTCCTCTTGTCGTCGCACGTTTGCTTCAGCTTCGTGGGTAAGTCCCCAGGTAGAGGTGTTCCCTACGGTAAATCCCCAGGAAAAGGTGT
TCCCAATGGTCATCTTAAATCGGGTTTTCCTGTTGTGGCACCGGTGGAACTGGAGGAACAGGAGGAATTCTCCCGCCATTCTTCTCCCTTCTATAATCTTGTGGATCAAC
TTGAGGATCGACTCCAGGAGGTTCCATTGGAAACTCTTGAATGTAAGATGCTTCCTCTAGAAATTCCTGTGCGCGTCTCTATTCTTTCCTTTGATGACGAAAGGAGAAAG
ATAAAGGGCAGAAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCATTTCTGGACAAATTCGTTGGGAATCCCGTTTTAAATGCTTCAGGGATAACGATAAGCAGGC
ATGTTCTAATGTTTTCATGGGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTAGAGATCGAGCTCCCGGTGCCTGATA
CACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCTACGTTTCAGGAGGGTCAATGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCATGCCATCTTC
CGGACTAAGCTAGCAGGTGGTCTGGGAGGGGGTGTGACACGTTATGCACATTTCAGTGACTCGACTCTGACATAG
Protein sequenceShow/hide protein sequence
MHGRFEVLLLSSHVCFSFVGKSPGRGVPYGKSPGKGVPNGHLKSGFPVVAPVELEEQEEFSRHSSPFYNLVDQLEDRLQEVPLETLECKMLPLEIPVRVSILSFDDERRK
IKGRREPRICVVCVRGISGQIRWESRFKCFRDNDKQACSNVFMGFSEISIDYMTEILSPRLYGTVEIELPVPDTLPTSAESSRSSSSSTFQEGQWVSLEEDDVRWLHAIF
RTKLAGGLGGGVTRYAHFSDSTLT