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Spg026800 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026800
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Genome locationscaffold13:27214767..27216349
RNA-Seq ExpressionSpg026800
SyntenySpg026800
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008233 - peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051909.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]6.6e-2981.18Show/hide
Query:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANAQQEAKNFESKLLYNVSSASKEENGVKMAREKLCSLEDGTGDENSVHNL
        +DS+NN LHVPEGPIT+ KAKKIQEAFTLHVQKLANAQ+E KNFE K LYNVSSAS+EE+GVKMAREKLC+ EDGTG+E SV NL
Subjt:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANAQQEAKNFESKLLYNVSSASKEENGVKMAREKLCSLEDGTGDENSVHNL

KAA0067206.1 hypothetical protein E6C27_scaffold418G00080 [Cucumis melo var. makuwa]5.6e-2881.18Show/hide
Query:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANAQQEAKNFESKLLYNVSSASKEENGVKMAREKLCSLEDGTGDENSVHNL
        +DSINN LHVPEGPIT+ KAKKIQEAFTLHVQKL NAQ+E KNFE K LYNVSSAS+EE+ +KMA EKLCSLEDGTGDE SV NL
Subjt:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANAQQEAKNFESKLLYNVSSASKEENGVKMAREKLCSLEDGTGDENSVHNL

TYK02449.1 F15O4.13 [Cucumis melo var. makuwa]1.9e-2881.18Show/hide
Query:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANAQQEAKNFESKLLYNVSSASKEENGVKMAREKLCSLEDGTGDENSVHNL
        +DS+NN LHVPEGPIT+ KAKKIQEAFTLHVQKLANAQ+E KNFE K LYNVSSAS+EE+GVKMAREKLC+LEDGT +E SV NL
Subjt:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANAQQEAKNFESKLLYNVSSASKEENGVKMAREKLCSLEDGTGDENSVHNL

TYK08102.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]1.5e-2873.68Show/hide
Query:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANAQQEAKNFESKLLYNVSSASKEENGVKMAREKLCSLEDGTGDENS---VHNLFDVQPIH
        +DS+NN LHVPEGPIT+ KAKKIQEAFTLHVQKLANAQ+E KNFE K LYNVSSAS+EE+GVKMAREKLC+LEDGTG+E     + + FD++ IH
Subjt:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANAQQEAKNFESKLLYNVSSASKEENGVKMAREKLCSLEDGTGDENS---VHNLFDVQPIH

TYK26105.1 F15O4.13 [Cucumis melo var. makuwa]1.9e-2881.18Show/hide
Query:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANAQQEAKNFESKLLYNVSSASKEENGVKMAREKLCSLEDGTGDENSVHNL
        +DS+NN LHVPEGPIT+ KAKKIQEAFTLHVQKLANAQ+E KNFE K LYNVSSAS+EE+ VKMAREKLC+LEDGTG+E SV NL
Subjt:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANAQQEAKNFESKLLYNVSSASKEENGVKMAREKLCSLEDGTGDENSVHNL

TrEMBL top hitse value%identityAlignment
A0A5A7UEI2 Transposon Ty3-I Gag-Pol polyprotein3.2e-2981.18Show/hide
Query:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANAQQEAKNFESKLLYNVSSASKEENGVKMAREKLCSLEDGTGDENSVHNL
        +DS+NN LHVPEGPIT+ KAKKIQEAFTLHVQKLANAQ+E KNFE K LYNVSSAS+EE+GVKMAREKLC+ EDGTG+E SV NL
Subjt:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANAQQEAKNFESKLLYNVSSASKEENGVKMAREKLCSLEDGTGDENSVHNL

A0A5A7VL78 RT_RNaseH_2 domain-containing protein2.7e-2881.18Show/hide
Query:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANAQQEAKNFESKLLYNVSSASKEENGVKMAREKLCSLEDGTGDENSVHNL
        +DSINN LHVPEGPIT+ KAKKIQEAFTLHVQKL NAQ+E KNFE K LYNVSSAS+EE+ +KMA EKLCSLEDGTGDE SV NL
Subjt:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANAQQEAKNFESKLLYNVSSASKEENGVKMAREKLCSLEDGTGDENSVHNL

A0A5D3BWE8 F15O4.139.4e-2981.18Show/hide
Query:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANAQQEAKNFESKLLYNVSSASKEENGVKMAREKLCSLEDGTGDENSVHNL
        +DS+NN LHVPEGPIT+ KAKKIQEAFTLHVQKLANAQ+E KNFE K LYNVSSAS+EE+GVKMAREKLC+LEDGT +E SV NL
Subjt:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANAQQEAKNFESKLLYNVSSASKEENGVKMAREKLCSLEDGTGDENSVHNL

A0A5D3C9X5 Transposon Ty3-I Gag-Pol polyprotein7.2e-2973.68Show/hide
Query:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANAQQEAKNFESKLLYNVSSASKEENGVKMAREKLCSLEDGTGDENS---VHNLFDVQPIH
        +DS+NN LHVPEGPIT+ KAKKIQEAFTLHVQKLANAQ+E KNFE K LYNVSSAS+EE+GVKMAREKLC+LEDGTG+E     + + FD++ IH
Subjt:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANAQQEAKNFESKLLYNVSSASKEENGVKMAREKLCSLEDGTGDENS---VHNLFDVQPIH

A0A5D3DRJ1 F15O4.139.4e-2981.18Show/hide
Query:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANAQQEAKNFESKLLYNVSSASKEENGVKMAREKLCSLEDGTGDENSVHNL
        +DS+NN LHVPEGPIT+ KAKKIQEAFTLHVQKLANAQ+E KNFE K LYNVSSAS+EE+ VKMAREKLC+LEDGTG+E SV NL
Subjt:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANAQQEAKNFESKLLYNVSSASKEENGVKMAREKLCSLEDGTGDENSVHNL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCAATCAATAATCCATTGCATGTACCTGAAGGACCAATCACAAGGAGCAAGGCAAAGAAGATACAAGAGGCTTTCACATTGCATGTTCAAAAGCTAGCAAATGC
ACAACAAGAGGCAAAGAATTTTGAATCCAAACTTTTGTATAATGTTAGTTCAGCAAGTAAAGAAGAGAATGGAGTCAAGATGGCACGGGAAAAGTTGTGTAGTTTGGAAG
ATGGCACGGGGGACGAAAACAGTGTGCATAATTTGTTTGATGTTCAACCGATTCATTGGATTAGTTTTGATCAATCTAATTCTGGAAGCCTTGGTCAACATCCTTTGGCC
GACTCTAGAGAGGAAGTTCCAGAAGTGATAGATCCAAATGTTGCTATTCTTCAAGCAATTCAAGGTGTGTTGGAATTGATGAGGGAAGATAGGCAAGAAAGGAGGGCACA
ACAACAAAGGGAAGTACGGCCATTCCAAGAAGATGAAGGAATGTTTGACTTAGTTGCACATGAAAGACAACTTGGAGGTAGAGGAAATGTGAGAGGGAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATTCAATCAATAATCCATTGCATGTACCTGAAGGACCAATCACAAGGAGCAAGGCAAAGAAGATACAAGAGGCTTTCACATTGCATGTTCAAAAGCTAGCAAATGC
ACAACAAGAGGCAAAGAATTTTGAATCCAAACTTTTGTATAATGTTAGTTCAGCAAGTAAAGAAGAGAATGGAGTCAAGATGGCACGGGAAAAGTTGTGTAGTTTGGAAG
ATGGCACGGGGGACGAAAACAGTGTGCATAATTTGTTTGATGTTCAACCGATTCATTGGATTAGTTTTGATCAATCTAATTCTGGAAGCCTTGGTCAACATCCTTTGGCC
GACTCTAGAGAGGAAGTTCCAGAAGTGATAGATCCAAATGTTGCTATTCTTCAAGCAATTCAAGGTGTGTTGGAATTGATGAGGGAAGATAGGCAAGAAAGGAGGGCACA
ACAACAAAGGGAAGTACGGCCATTCCAAGAAGATGAAGGAATGTTTGACTTAGTTGCACATGAAAGACAACTTGGAGGTAGAGGAAATGTGAGAGGGAGATGA
Protein sequenceShow/hide protein sequence
MDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANAQQEAKNFESKLLYNVSSASKEENGVKMAREKLCSLEDGTGDENSVHNLFDVQPIHWISFDQSNSGSLGQHPLA
DSREEVPEVIDPNVAILQAIQGVLELMREDRQERRAQQQREVRPFQEDEGMFDLVAHERQLGGRGNVRGR