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Spg026812 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026812
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold13:26431135..26434692
RNA-Seq ExpressionSpg026812
SyntenySpg026812
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]3.2e-0833.52Show/hide
Query:  PSGNRSSLLTRELAKTEMVDWSYSAILK---LIGCSGRQKMQRNEKESKRKKSTFGQHLTSVETPSLERLDAGIPYQNRRKKVEIELSVPDTLPTSAESS
        P GNR SL T E+ KT +   S  ++L     +  +G+  +++   E +   +T    + S                     VEIEL VPD LPTSAESS
Subjt:  PSGNRSSLLTRELAKTEMVDWSYSAILK---LIGCSGRQKMQRNEKESKRKKSTFGQHLTSVETPSLERLDAGIPYQNRRKKVEIELSVPDTLPTSAESS

Query:  RSSSSL---VRLSGSMKQKGQRVLLEE----------------DDVRWLHAIFRTKLAGGPGGGVTAFLLLPRLLHPLL
        RS+SS    +       +   +V+L+                 DDV WLHAIFR K AGGPGGGVT +       H +L
Subjt:  RSSSSL---VRLSGSMKQKGQRVLLEE----------------DDVRWLHAIFRTKLAGGPGGGVTAFLLLPRLLHPLL

KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.5e-0858.82Show/hide
Query:  VEIELSVPDTLPTSAESSRS-SSSLVRL---SGSMKQKGQRVLLEEDDVRWLHAIFRTKLAGGPGGGV
        VEIEL +PDTLPTSAESS S SS+L+ L   S  ++  G   ++  DDV WLHA+FR K  GGPGGGV
Subjt:  VEIELSVPDTLPTSAESSRS-SSSLVRL---SGSMKQKGQRVLLEEDDVRWLHAIFRTKLAGGPGGGV

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]6.5e-0935.03Show/hide
Query:  PSGNRSSLLTRELAKTEMVDWSYSAILK----LIGCSG--RQKMQRNEKESKRKKSTFGQHLTSVETPSLERLDAGIPYQNRRKKVEIELSVPDTLPTSA
        P GNRSSL T EL KT     S  ++L+    ++   G    K   N   +   + T  + L          +     +      VEIELSVPDTLPTSA
Subjt:  PSGNRSSLLTRELAKTEMVDWSYSAILK----LIGCSG--RQKMQRNEKESKRKKSTFGQHLTSVETPSLERLDAGIPYQNRRKKVEIELSVPDTLPTSA

Query:  ESSRSSSSLVRLSGSMKQKGQRVLLEEDDVRWLHAIFRTKLAGGPGGGVTAFLLLPRLL-HPLLQQLPCPYSIVDGN
        ESS S+S   R +G         ++  DDV WLH +FR K  GGPGG VT    +P ++ H   Q +    S+++G+
Subjt:  ESSRSSSSLVRLSGSMKQKGQRVLLEEDDVRWLHAIFRTKLAGGPGGGVTAFLLLPRLL-HPLLQQLPCPYSIVDGN

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]6.5e-0935.03Show/hide
Query:  PSGNRSSLLTRELAKTEMVDWSYSAILK----LIGCSG--RQKMQRNEKESKRKKSTFGQHLTSVETPSLERLDAGIPYQNRRKKVEIELSVPDTLPTSA
        P GNRSSL T EL KT     S  ++L+    ++   G    K   N   +   + T  + L          +     +      VEIELSVPDTLPTSA
Subjt:  PSGNRSSLLTRELAKTEMVDWSYSAILK----LIGCSG--RQKMQRNEKESKRKKSTFGQHLTSVETPSLERLDAGIPYQNRRKKVEIELSVPDTLPTSA

Query:  ESSRSSSSLVRLSGSMKQKGQRVLLEEDDVRWLHAIFRTKLAGGPGGGVTAFLLLPRLL-HPLLQQLPCPYSIVDGN
        ESS S+S   R +G         ++  DDV WLH +FR K  GGPGG VT    +P ++ H   Q +    S+++G+
Subjt:  ESSRSSSSLVRLSGSMKQKGQRVLLEEDDVRWLHAIFRTKLAGGPGGGVTAFLLLPRLL-HPLLQQLPCPYSIVDGN

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.5e-0858.82Show/hide
Query:  VEIELSVPDTLPTSAESSRS-SSSLVRL---SGSMKQKGQRVLLEEDDVRWLHAIFRTKLAGGPGGGV
        VEIEL +PDTLPTSAESS S SS+L+ L   S  ++  G   ++  DDV WLHA+FR K  GGPGGGV
Subjt:  VEIELSVPDTLPTSAESSRS-SSSLVRL---SGSMKQKGQRVLLEEDDVRWLHAIFRTKLAGGPGGGV

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase1.2e-0858.82Show/hide
Query:  VEIELSVPDTLPTSAESSRS-SSSLVRL---SGSMKQKGQRVLLEEDDVRWLHAIFRTKLAGGPGGGV
        VEIEL +PDTLPTSAESS S SS+L+ L   S  ++  G   ++  DDV WLHA+FR K  GGPGGGV
Subjt:  VEIELSVPDTLPTSAESSRS-SSSLVRL---SGSMKQKGQRVLLEEDDVRWLHAIFRTKLAGGPGGGV

A0A5A7VGQ5 Uncharacterized protein3.1e-0935.03Show/hide
Query:  PSGNRSSLLTRELAKTEMVDWSYSAILK----LIGCSG--RQKMQRNEKESKRKKSTFGQHLTSVETPSLERLDAGIPYQNRRKKVEIELSVPDTLPTSA
        P GNRSSL T EL KT     S  ++L+    ++   G    K   N   +   + T  + L          +     +      VEIELSVPDTLPTSA
Subjt:  PSGNRSSLLTRELAKTEMVDWSYSAILK----LIGCSG--RQKMQRNEKESKRKKSTFGQHLTSVETPSLERLDAGIPYQNRRKKVEIELSVPDTLPTSA

Query:  ESSRSSSSLVRLSGSMKQKGQRVLLEEDDVRWLHAIFRTKLAGGPGGGVTAFLLLPRLL-HPLLQQLPCPYSIVDGN
        ESS S+S   R +G         ++  DDV WLH +FR K  GGPGG VT    +P ++ H   Q +    S+++G+
Subjt:  ESSRSSSSLVRLSGSMKQKGQRVLLEEDDVRWLHAIFRTKLAGGPGGGVTAFLLLPRLL-HPLLQQLPCPYSIVDGN

A0A5D3BG85 Uncharacterized protein3.1e-0935.03Show/hide
Query:  PSGNRSSLLTRELAKTEMVDWSYSAILK----LIGCSG--RQKMQRNEKESKRKKSTFGQHLTSVETPSLERLDAGIPYQNRRKKVEIELSVPDTLPTSA
        P GNRSSL T EL KT     S  ++L+    ++   G    K   N   +   + T  + L          +     +      VEIELSVPDTLPTSA
Subjt:  PSGNRSSLLTRELAKTEMVDWSYSAILK----LIGCSG--RQKMQRNEKESKRKKSTFGQHLTSVETPSLERLDAGIPYQNRRKKVEIELSVPDTLPTSA

Query:  ESSRSSSSLVRLSGSMKQKGQRVLLEEDDVRWLHAIFRTKLAGGPGGGVTAFLLLPRLL-HPLLQQLPCPYSIVDGN
        ESS S+S   R +G         ++  DDV WLH +FR K  GGPGG VT    +P ++ H   Q +    S+++G+
Subjt:  ESSRSSSSLVRLSGSMKQKGQRVLLEEDDVRWLHAIFRTKLAGGPGGGVTAFLLLPRLL-HPLLQQLPCPYSIVDGN

A0A5D3BTP3 Reverse transcriptase1.6e-0833.52Show/hide
Query:  PSGNRSSLLTRELAKTEMVDWSYSAILK---LIGCSGRQKMQRNEKESKRKKSTFGQHLTSVETPSLERLDAGIPYQNRRKKVEIELSVPDTLPTSAESS
        P GNR SL T E+ KT +   S  ++L     +  +G+  +++   E +   +T    + S                     VEIEL VPD LPTSAESS
Subjt:  PSGNRSSLLTRELAKTEMVDWSYSAILK---LIGCSGRQKMQRNEKESKRKKSTFGQHLTSVETPSLERLDAGIPYQNRRKKVEIELSVPDTLPTSAESS

Query:  RSSSSL---VRLSGSMKQKGQRVLLEE----------------DDVRWLHAIFRTKLAGGPGGGVTAFLLLPRLLHPLL
        RS+SS    +       +   +V+L+                 DDV WLHAIFR K AGGPGGGVT +       H +L
Subjt:  RSSSSL---VRLSGSMKQKGQRVLLEE----------------DDVRWLHAIFRTKLAGGPGGGVTAFLLLPRLLHPLL

A0A5D3D150 Reverse transcriptase1.2e-0858.82Show/hide
Query:  VEIELSVPDTLPTSAESSRS-SSSLVRL---SGSMKQKGQRVLLEEDDVRWLHAIFRTKLAGGPGGGV
        VEIEL +PDTLPTSAESS S SS+L+ L   S  ++  G   ++  DDV WLHA+FR K  GGPGGGV
Subjt:  VEIELSVPDTLPTSAESSRS-SSSLVRL---SGSMKQKGQRVLLEEDDVRWLHAIFRTKLAGGPGGGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGAATCTGGGTTCAACATGCCAATCTCTGGTTTTTTATTCGGTTTGAGCTACATAGGAAGAACTAAGAGGAGAAAGATAAAGGGTAGTAGAGAACCTCGAATCTG
TGTTGTCTGTGTTCGGGGCATATCGGGACATATTGGTTGGGAATCTCGTTTTCATTGCTTCAGGCCAAGTGGAAATAGGTCGAGTCTACTGACCAGGGAACTAGCTAAGA
CTGAAATGGTTGATTGGAGCTATAGCGCAATATTGAAGTTAATCGGGTGCTCGGGACGTCAAAAGATGCAAAGGAATGAAAAAGAATCAAAGAGAAAAAAGTCAACATTC
GGTCAACACTTGACCAGCGTCGAGACGCCATCCCTTGAGCGTCTCGACGCTGGCATTCCATATCAGAATAGGCGCAAAAAGGTAGAGATCGAGCTCTCGGTGCCTGATAC
ACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTTAGTACGTTTATCAGGTTCAATGAAGCAGAAGGGTCAACGGGTATTGTTAGAGGAGGACGATGTTCGTT
GGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAGCATTCCTGCTTCTTCCTCGTCTGCTTCATCCGTTGCTTCAGCAACTCCCTTGC
CCTTATTCTATCGTCGACGGCAATGGAGTGTCTGTCCTAATCACCTTGATTCGGCTGGCCTTCTGCTTTCATCGTCGCTTTCGGCGACGACGACGTGGAATCTCCGGAAC
AACGTCTTCAACCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGAATCTGGGTTCAACATGCCAATCTCTGGTTTTTTATTCGGTTTGAGCTACATAGGAAGAACTAAGAGGAGAAAGATAAAGGGTAGTAGAGAACCTCGAATCTG
TGTTGTCTGTGTTCGGGGCATATCGGGACATATTGGTTGGGAATCTCGTTTTCATTGCTTCAGGCCAAGTGGAAATAGGTCGAGTCTACTGACCAGGGAACTAGCTAAGA
CTGAAATGGTTGATTGGAGCTATAGCGCAATATTGAAGTTAATCGGGTGCTCGGGACGTCAAAAGATGCAAAGGAATGAAAAAGAATCAAAGAGAAAAAAGTCAACATTC
GGTCAACACTTGACCAGCGTCGAGACGCCATCCCTTGAGCGTCTCGACGCTGGCATTCCATATCAGAATAGGCGCAAAAAGGTAGAGATCGAGCTCTCGGTGCCTGATAC
ACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTTAGTACGTTTATCAGGTTCAATGAAGCAGAAGGGTCAACGGGTATTGTTAGAGGAGGACGATGTTCGTT
GGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAGCATTCCTGCTTCTTCCTCGTCTGCTTCATCCGTTGCTTCAGCAACTCCCTTGC
CCTTATTCTATCGTCGACGGCAATGGAGTGTCTGTCCTAATCACCTTGATTCGGCTGGCCTTCTGCTTTCATCGTCGCTTTCGGCGACGACGACGTGGAATCTCCGGAAC
AACGTCTTCAACCTGA
Protein sequenceShow/hide protein sequence
MAESGFNMPISGFLFGLSYIGRTKRRKIKGSREPRICVVCVRGISGHIGWESRFHCFRPSGNRSSLLTRELAKTEMVDWSYSAILKLIGCSGRQKMQRNEKESKRKKSTF
GQHLTSVETPSLERLDAGIPYQNRRKKVEIELSVPDTLPTSAESSRSSSSLVRLSGSMKQKGQRVLLEEDDVRWLHAIFRTKLAGGPGGGVTAFLLLPRLLHPLLQQLPC
PYSIVDGNGVSVLITLIRLAFCFHRRFRRRRRGISGTTSST