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Spg026819 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026819
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold13:26360850..26362834
RNA-Seq ExpressionSpg026819
SyntenySpg026819
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]2.4e-2044.32Show/hide
Query:  GFSSKPGGSLVFSGVLSILG-----------------------CT------------------------SRIRSSIRPRGNRSSLQTGELDKTPEAIWYR
        GFSSKPGG LVFS  LSIL                        C+                        S + +   PRGNR SLQT E+DKT   + + 
Subjt:  GFSSKPGGSLVFSGVLSILG-----------------------CT------------------------SRIRSSIRPRGNRSSLQTGELDKTPEAIWYR

Query:  VHTSYIPLSVLRDNDAVMSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSNTWVELYIESVY
        + T    LSVL DNDAV+SAG+APL +R   RW     PT    +  S  LVEIELPVPD LPTSAESSRS+S+TW+ELY ESV+
Subjt:  VHTSYIPLSVLRDNDAVMSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSNTWVELYIESVY

KAA0053276.1 uncharacterized protein E6C27_scaffold102G00750 [Cucumis melo var. makuwa]1.1e-2041.59Show/hide
Query:  PTTDKLTFQPIFSSFLHQFPFKSSELLRERVKEEEEEEFRGFEVEEDKKSSCKASHSRIWVENCQPLVFYSVCATQKGIRGFSSKPGGSLVFSGVLSILG
        PTTDKL FQ  F  FLH F  K SE  +ERVK EEEEEFRG  +++ KK               Q     ++ AT                   +  +L 
Subjt:  PTTDKLTFQPIFSSFLHQFPFKSSELLRERVKEEEEEEFRGFEVEEDKKSSCKASHSRIWVENCQPLVFYSVCATQKGIRGFSSKPGGSLVFSGVLSILG

Query:  CTSRIRSSIRPRGNRSSLQTGELDKTPEAIWYRVHTSYIPLSVLRDNDAVMSAGRAPLHRRTSKRWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRS
          S    ++RPRGNR SLQTG+LDKT   + +++ T    LSVLRDNDAV+               L+   PT       VEIELP+PDTLPT AES  S
Subjt:  CTSRIRSSIRPRGNRSSLQTGELDKTPEAIWYRVHTSYIPLSVLRDNDAVMSAGRAPLHRRTSKRWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRS

Query:  SSNTWVELYIESVY
        +S+TW+ELY ESV+
Subjt:  SSNTWVELYIESVY

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]9.9e-3060.54Show/hide
Query:  FSSKPGGSLVFSGVLSILGC--TSRIRSSIRPRGNRSSLQTGELDKTPEAIWYRVHTSYIPLSVLRDNDAVMSAG------------RAPLHRRTSKRWL
        FSSKPG  LVFS  LSIL    +++    + PRGNRSSLQTGELDKT       V  S   LSVLRDNDAV+SAG            RAPLHRRTSKRWL
Subjt:  FSSKPGGSLVFSGVLSILGC--TSRIRSSIRPRGNRSSLQTGELDKTPEAIWYRVHTSYIPLSVLRDNDAVMSAG------------RAPLHRRTSKRWL

Query:  YWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSSNT
        YWACPT RRSVML          VEIEL VPDTLPTSAESS S+S +
Subjt:  YWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSSNT

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]9.9e-3060.54Show/hide
Query:  FSSKPGGSLVFSGVLSILGC--TSRIRSSIRPRGNRSSLQTGELDKTPEAIWYRVHTSYIPLSVLRDNDAVMSAG------------RAPLHRRTSKRWL
        FSSKPG  LVFS  LSIL    +++    + PRGNRSSLQTGELDKT       V  S   LSVLRDNDAV+SAG            RAPLHRRTSKRWL
Subjt:  FSSKPGGSLVFSGVLSILGC--TSRIRSSIRPRGNRSSLQTGELDKTPEAIWYRVHTSYIPLSVLRDNDAVMSAG------------RAPLHRRTSKRWL

Query:  YWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSSNT
        YWACPT RRSVML          VEIEL VPDTLPTSAESS S+S +
Subjt:  YWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSSNT

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]5.4e-2842.11Show/hide
Query:  LTFQPIFSSFLHQFPFKSSELLRERVKEEEEEEFRGFEVEEDKKSSCKASHSRIWVENCQPLVFYSVCATQKGIRGFSSKPGGSLVFSGVLSILGCTSRI
        + FQP F SFLH FP K SE   ERVK EEEEEFRG  +++  KSSCKA+H RIW                    GFSSKP G LVFS  LSIL      
Subjt:  LTFQPIFSSFLHQFPFKSSELLRERVKEEEEEEFRGFEVEEDKKSSCKASHSRIWVENCQPLVFYSVCATQKGIRGFSSKPGGSLVFSGVLSILGCTSRI

Query:  RS-------------SIRPRGNRSSLQTGELDKTPEAIWY-------RVHTSYIP--------LSVLRDNDAVMSAGRAPLHRRT----SKRWLYWACPT
        +               + PRGNRSSLQTG+LDK   +I Y       R++ +  P        LSVLRDNDAV+S G+    +         ++      
Subjt:  RS-------------SIRPRGNRSSLQTGELDKTPEAIWY-------RVHTSYIP--------LSVLRDNDAVMSAGRAPLHRRT----SKRWLYWACPT

Query:  QRRSVML------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVY
             +L      +EIEL VPDTLPTSAESS S+S+TW+E   E  Y
Subjt:  QRRSVML------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVY

TrEMBL top hitse value%identityAlignment
A0A5A7UGD0 Uncharacterized protein5.3e-2141.59Show/hide
Query:  PTTDKLTFQPIFSSFLHQFPFKSSELLRERVKEEEEEEFRGFEVEEDKKSSCKASHSRIWVENCQPLVFYSVCATQKGIRGFSSKPGGSLVFSGVLSILG
        PTTDKL FQ  F  FLH F  K SE  +ERVK EEEEEFRG  +++ KK               Q     ++ AT                   +  +L 
Subjt:  PTTDKLTFQPIFSSFLHQFPFKSSELLRERVKEEEEEEFRGFEVEEDKKSSCKASHSRIWVENCQPLVFYSVCATQKGIRGFSSKPGGSLVFSGVLSILG

Query:  CTSRIRSSIRPRGNRSSLQTGELDKTPEAIWYRVHTSYIPLSVLRDNDAVMSAGRAPLHRRTSKRWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRS
          S    ++RPRGNR SLQTG+LDKT   + +++ T    LSVLRDNDAV+               L+   PT       VEIELP+PDTLPT AES  S
Subjt:  CTSRIRSSIRPRGNRSSLQTGELDKTPEAIWYRVHTSYIPLSVLRDNDAVMSAGRAPLHRRTSKRWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRS

Query:  SSNTWVELYIESVY
        +S+TW+ELY ESV+
Subjt:  SSNTWVELYIESVY

A0A5A7VGQ5 Uncharacterized protein4.8e-3060.54Show/hide
Query:  FSSKPGGSLVFSGVLSILGC--TSRIRSSIRPRGNRSSLQTGELDKTPEAIWYRVHTSYIPLSVLRDNDAVMSAG------------RAPLHRRTSKRWL
        FSSKPG  LVFS  LSIL    +++    + PRGNRSSLQTGELDKT       V  S   LSVLRDNDAV+SAG            RAPLHRRTSKRWL
Subjt:  FSSKPGGSLVFSGVLSILGC--TSRIRSSIRPRGNRSSLQTGELDKTPEAIWYRVHTSYIPLSVLRDNDAVMSAG------------RAPLHRRTSKRWL

Query:  YWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSSNT
        YWACPT RRSVML          VEIEL VPDTLPTSAESS S+S +
Subjt:  YWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSSNT

A0A5D3BG85 Uncharacterized protein4.8e-3060.54Show/hide
Query:  FSSKPGGSLVFSGVLSILGC--TSRIRSSIRPRGNRSSLQTGELDKTPEAIWYRVHTSYIPLSVLRDNDAVMSAG------------RAPLHRRTSKRWL
        FSSKPG  LVFS  LSIL    +++    + PRGNRSSLQTGELDKT       V  S   LSVLRDNDAV+SAG            RAPLHRRTSKRWL
Subjt:  FSSKPGGSLVFSGVLSILGC--TSRIRSSIRPRGNRSSLQTGELDKTPEAIWYRVHTSYIPLSVLRDNDAVMSAG------------RAPLHRRTSKRWL

Query:  YWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSSNT
        YWACPT RRSVML          VEIEL VPDTLPTSAESS S+S +
Subjt:  YWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSSNT

A0A5D3BTP3 Reverse transcriptase1.2e-2044.32Show/hide
Query:  GFSSKPGGSLVFSGVLSILG-----------------------CT------------------------SRIRSSIRPRGNRSSLQTGELDKTPEAIWYR
        GFSSKPGG LVFS  LSIL                        C+                        S + +   PRGNR SLQT E+DKT   + + 
Subjt:  GFSSKPGGSLVFSGVLSILG-----------------------CT------------------------SRIRSSIRPRGNRSSLQTGELDKTPEAIWYR

Query:  VHTSYIPLSVLRDNDAVMSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSNTWVELYIESVY
        + T    LSVL DNDAV+SAG+APL +R   RW     PT    +  S  LVEIELPVPD LPTSAESSRS+S+TW+ELY ESV+
Subjt:  VHTSYIPLSVLRDNDAVMSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSNTWVELYIESVY

A0A5D3CAC6 Uncharacterized protein2.6e-2842.11Show/hide
Query:  LTFQPIFSSFLHQFPFKSSELLRERVKEEEEEEFRGFEVEEDKKSSCKASHSRIWVENCQPLVFYSVCATQKGIRGFSSKPGGSLVFSGVLSILGCTSRI
        + FQP F SFLH FP K SE   ERVK EEEEEFRG  +++  KSSCKA+H RIW                    GFSSKP G LVFS  LSIL      
Subjt:  LTFQPIFSSFLHQFPFKSSELLRERVKEEEEEEFRGFEVEEDKKSSCKASHSRIWVENCQPLVFYSVCATQKGIRGFSSKPGGSLVFSGVLSILGCTSRI

Query:  RS-------------SIRPRGNRSSLQTGELDKTPEAIWY-------RVHTSYIP--------LSVLRDNDAVMSAGRAPLHRRT----SKRWLYWACPT
        +               + PRGNRSSLQTG+LDK   +I Y       R++ +  P        LSVLRDNDAV+S G+    +         ++      
Subjt:  RS-------------SIRPRGNRSSLQTGELDKTPEAIWY-------RVHTSYIP--------LSVLRDNDAVMSAGRAPLHRRT----SKRWLYWACPT

Query:  QRRSVML------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVY
             +L      +EIEL VPDTLPTSAESS S+S+TW+E   E  Y
Subjt:  QRRSVML------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAATGACAGCAAGACACCCACCACCGACAAGCTCACTTTTCAGCCCATTTTCAGTTCATTCCTCCATCAGTTTCCATTCAAATCTTCAGAGCTCTTGAGGGAGAG
AGTGAAGGAGGAAGAAGAAGAAGAATTTCGTGGTTTTGAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGGAAAACTGTCAACCTC
TGGTTTTTTATTCGGTTTGCGCTACACAGAAGGGAATAAGAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGT
CGAATCAGAAGCTCTATTAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACACCCGAGGCTATATGGTACCGTGTGCACACAAGTTATATTCC
GTTGAGTGTACTCCGTGACAACGATGCTGTCATGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGAT
CGGTCATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAGATCAAGCTCCAATACGTGGGTGGAGTTGTATATTGAGTCTGTC
TATTATGTAAATGTTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAAATGACAGCAAGACACCCACCACCGACAAGCTCACTTTTCAGCCCATTTTCAGTTCATTCCTCCATCAGTTTCCATTCAAATCTTCAGAGCTCTTGAGGGAGAG
AGTGAAGGAGGAAGAAGAAGAAGAATTTCGTGGTTTTGAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGGAAAACTGTCAACCTC
TGGTTTTTTATTCGGTTTGCGCTACACAGAAGGGAATAAGAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGT
CGAATCAGAAGCTCTATTAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACACCCGAGGCTATATGGTACCGTGTGCACACAAGTTATATTCC
GTTGAGTGTACTCCGTGACAACGATGCTGTCATGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGAT
CGGTCATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAGATCAAGCTCCAATACGTGGGTGGAGTTGTATATTGAGTCTGTC
TATTATGTAAATGTTTTGTAA
Protein sequenceShow/hide protein sequence
MGNDSKTPTTDKLTFQPIFSSFLHQFPFKSSELLRERVKEEEEEEFRGFEVEEDKKSSCKASHSRIWVENCQPLVFYSVCATQKGIRGFSSKPGGSLVFSGVLSILGCTS
RIRSSIRPRGNRSSLQTGELDKTPEAIWYRVHTSYIPLSVLRDNDAVMSAGRAPLHRRTSKRWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRSSSNTWVELYIESV
YYVNVL