; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg026833 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026833
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRegulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
Genome locationscaffold13:23803720..23807410
RNA-Seq ExpressionSpg026833
SyntenySpg026833
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR013591 - Brevis radix (BRX) domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022156644.1 uncharacterized protein LOC111023494 isoform X1 [Momordica charantia]3.8e-5584.09Show/hide
Query:  ALVYKLKEMAEKMPEGHTAILNSGTVSGHNGSNFNQLSTESLSISINSRLESNGISKTHTLSTGIKGQNDKAEWVVQDEPGVYITLSALPGGGNELKRVR
        +L  +LK+MAEKMPEG++AI +SGTVSG N SN NQLS ESLS+SINSRLESNGISK+ T+STG KGQN+KAEWVVQDEPGVYITL+ALPGGGNELKRVR
Subjt:  ALVYKLKEMAEKMPEGHTAILNSGTVSGHNGSNFNQLSTESLSISINSRLESNGISKTHTLSTGIKGQNDKAEWVVQDEPGVYITLSALPGGGNELKRVR

Query:  FSRRHFTEAQAEKWWAEFGTKVCERNNVKSTD
        FSRRHFTEAQAEKWWAEFGTKVCER+NVKSTD
Subjt:  FSRRHFTEAQAEKWWAEFGTKVCERNNVKSTD

XP_022156646.1 E3 ubiquitin-protein ligase HERC2-like isoform X3 [Momordica charantia]3.8e-5584.09Show/hide
Query:  ALVYKLKEMAEKMPEGHTAILNSGTVSGHNGSNFNQLSTESLSISINSRLESNGISKTHTLSTGIKGQNDKAEWVVQDEPGVYITLSALPGGGNELKRVR
        +L  +LK+MAEKMPEG++AI +SGTVSG N SN NQLS ESLS+SINSRLESNGISK+ T+STG KGQN+KAEWVVQDEPGVYITL+ALPGGGNELKRVR
Subjt:  ALVYKLKEMAEKMPEGHTAILNSGTVSGHNGSNFNQLSTESLSISINSRLESNGISKTHTLSTGIKGQNDKAEWVVQDEPGVYITLSALPGGGNELKRVR

Query:  FSRRHFTEAQAEKWWAEFGTKVCERNNVKSTD
        FSRRHFTEAQAEKWWAEFGTKVCER+NVKSTD
Subjt:  FSRRHFTEAQAEKWWAEFGTKVCERNNVKSTD

XP_038890268.1 PH, RCC1 and FYVE domains-containing protein 1-like isoform X1 [Benincasa hispida]2.6e-5687.12Show/hide
Query:  ALVYKLKEMAEKMPEGHTAILNSGTVSGHNGSNFNQLSTESLSISINSRLESNGISKTHTLSTGIKGQNDKAEWVVQDEPGVYITLSALPGGGNELKRVR
        +L  +LKEMAEKMPEGHTAILNSGTV G NGSNFNQLSTESLS+SINSRLESNGISK  TLSTG K QN+KAEWVVQDEPGVYITLSALPGG NELKRVR
Subjt:  ALVYKLKEMAEKMPEGHTAILNSGTVSGHNGSNFNQLSTESLSISINSRLESNGISKTHTLSTGIKGQNDKAEWVVQDEPGVYITLSALPGGGNELKRVR

Query:  FSRRHFTEAQAEKWWAEFGTKVCERNNVKSTD
        FSRRHFTEAQAEKWWAEFG KVCER+ VK+TD
Subjt:  FSRRHFTEAQAEKWWAEFGTKVCERNNVKSTD

XP_038890270.1 PH, RCC1 and FYVE domains-containing protein 1-like isoform X3 [Benincasa hispida]2.6e-5687.12Show/hide
Query:  ALVYKLKEMAEKMPEGHTAILNSGTVSGHNGSNFNQLSTESLSISINSRLESNGISKTHTLSTGIKGQNDKAEWVVQDEPGVYITLSALPGGGNELKRVR
        +L  +LKEMAEKMPEGHTAILNSGTV G NGSNFNQLSTESLS+SINSRLESNGISK  TLSTG K QN+KAEWVVQDEPGVYITLSALPGG NELKRVR
Subjt:  ALVYKLKEMAEKMPEGHTAILNSGTVSGHNGSNFNQLSTESLSISINSRLESNGISKTHTLSTGIKGQNDKAEWVVQDEPGVYITLSALPGGGNELKRVR

Query:  FSRRHFTEAQAEKWWAEFGTKVCERNNVKSTD
        FSRRHFTEAQAEKWWAEFG KVCER+ VK+TD
Subjt:  FSRRHFTEAQAEKWWAEFGTKVCERNNVKSTD

XP_038890271.1 PH, RCC1 and FYVE domains-containing protein 1-like isoform X4 [Benincasa hispida]2.6e-5687.12Show/hide
Query:  ALVYKLKEMAEKMPEGHTAILNSGTVSGHNGSNFNQLSTESLSISINSRLESNGISKTHTLSTGIKGQNDKAEWVVQDEPGVYITLSALPGGGNELKRVR
        +L  +LKEMAEKMPEGHTAILNSGTV G NGSNFNQLSTESLS+SINSRLESNGISK  TLSTG K QN+KAEWVVQDEPGVYITLSALPGG NELKRVR
Subjt:  ALVYKLKEMAEKMPEGHTAILNSGTVSGHNGSNFNQLSTESLSISINSRLESNGISKTHTLSTGIKGQNDKAEWVVQDEPGVYITLSALPGGGNELKRVR

Query:  FSRRHFTEAQAEKWWAEFGTKVCERNNVKSTD
        FSRRHFTEAQAEKWWAEFG KVCER+ VK+TD
Subjt:  FSRRHFTEAQAEKWWAEFGTKVCERNNVKSTD

TrEMBL top hitse value%identityAlignment
A0A1S3B4R6 X-linked retinitis pigmentosa GTPase regulator-like isoform X11.6e-5484.85Show/hide
Query:  ALVYKLKEMAEKMPEGHTAILNSGTVSGHNGSNFNQLSTESLSISINSRLESNGISKTHTLSTGIKGQNDKAEWVVQDEPGVYITLSALPGGGNELKRVR
        +L  +LKEMAEKMPE  TAI+NS TVSG NGSN NQLSTESLS+SINSRLESNGISK+ TLSTGIK  N+KAEWVVQDEPGVYITLSALPGG NELKRVR
Subjt:  ALVYKLKEMAEKMPEGHTAILNSGTVSGHNGSNFNQLSTESLSISINSRLESNGISKTHTLSTGIKGQNDKAEWVVQDEPGVYITLSALPGGGNELKRVR

Query:  FSRRHFTEAQAEKWWAEFGTKVCERNNVKSTD
        FSRRHFTEAQAEKWWAEFG KVCER+ VKSTD
Subjt:  FSRRHFTEAQAEKWWAEFGTKVCERNNVKSTD

A0A1S4DUS6 X-linked retinitis pigmentosa GTPase regulator-like isoform X41.6e-5484.85Show/hide
Query:  ALVYKLKEMAEKMPEGHTAILNSGTVSGHNGSNFNQLSTESLSISINSRLESNGISKTHTLSTGIKGQNDKAEWVVQDEPGVYITLSALPGGGNELKRVR
        +L  +LKEMAEKMPE  TAI+NS TVSG NGSN NQLSTESLS+SINSRLESNGISK+ TLSTGIK  N+KAEWVVQDEPGVYITLSALPGG NELKRVR
Subjt:  ALVYKLKEMAEKMPEGHTAILNSGTVSGHNGSNFNQLSTESLSISINSRLESNGISKTHTLSTGIKGQNDKAEWVVQDEPGVYITLSALPGGGNELKRVR

Query:  FSRRHFTEAQAEKWWAEFGTKVCERNNVKSTD
        FSRRHFTEAQAEKWWAEFG KVCER+ VKSTD
Subjt:  FSRRHFTEAQAEKWWAEFGTKVCERNNVKSTD

A0A6J1DQW9 E3 ubiquitin-protein ligase HERC2-like isoform X21.8e-5584.09Show/hide
Query:  ALVYKLKEMAEKMPEGHTAILNSGTVSGHNGSNFNQLSTESLSISINSRLESNGISKTHTLSTGIKGQNDKAEWVVQDEPGVYITLSALPGGGNELKRVR
        +L  +LK+MAEKMPEG++AI +SGTVSG N SN NQLS ESLS+SINSRLESNGISK+ T+STG KGQN+KAEWVVQDEPGVYITL+ALPGGGNELKRVR
Subjt:  ALVYKLKEMAEKMPEGHTAILNSGTVSGHNGSNFNQLSTESLSISINSRLESNGISKTHTLSTGIKGQNDKAEWVVQDEPGVYITLSALPGGGNELKRVR

Query:  FSRRHFTEAQAEKWWAEFGTKVCERNNVKSTD
        FSRRHFTEAQAEKWWAEFGTKVCER+NVKSTD
Subjt:  FSRRHFTEAQAEKWWAEFGTKVCERNNVKSTD

A0A6J1DU52 uncharacterized protein LOC111023494 isoform X11.8e-5584.09Show/hide
Query:  ALVYKLKEMAEKMPEGHTAILNSGTVSGHNGSNFNQLSTESLSISINSRLESNGISKTHTLSTGIKGQNDKAEWVVQDEPGVYITLSALPGGGNELKRVR
        +L  +LK+MAEKMPEG++AI +SGTVSG N SN NQLS ESLS+SINSRLESNGISK+ T+STG KGQN+KAEWVVQDEPGVYITL+ALPGGGNELKRVR
Subjt:  ALVYKLKEMAEKMPEGHTAILNSGTVSGHNGSNFNQLSTESLSISINSRLESNGISKTHTLSTGIKGQNDKAEWVVQDEPGVYITLSALPGGGNELKRVR

Query:  FSRRHFTEAQAEKWWAEFGTKVCERNNVKSTD
        FSRRHFTEAQAEKWWAEFGTKVCER+NVKSTD
Subjt:  FSRRHFTEAQAEKWWAEFGTKVCERNNVKSTD

A0A6J1DVK2 E3 ubiquitin-protein ligase HERC2-like isoform X31.8e-5584.09Show/hide
Query:  ALVYKLKEMAEKMPEGHTAILNSGTVSGHNGSNFNQLSTESLSISINSRLESNGISKTHTLSTGIKGQNDKAEWVVQDEPGVYITLSALPGGGNELKRVR
        +L  +LK+MAEKMPEG++AI +SGTVSG N SN NQLS ESLS+SINSRLESNGISK+ T+STG KGQN+KAEWVVQDEPGVYITL+ALPGGGNELKRVR
Subjt:  ALVYKLKEMAEKMPEGHTAILNSGTVSGHNGSNFNQLSTESLSISINSRLESNGISKTHTLSTGIKGQNDKAEWVVQDEPGVYITLSALPGGGNELKRVR

Query:  FSRRHFTEAQAEKWWAEFGTKVCERNNVKSTD
        FSRRHFTEAQAEKWWAEFGTKVCER+NVKSTD
Subjt:  FSRRHFTEAQAEKWWAEFGTKVCERNNVKSTD

SwissProt top hitse value%identityAlignment
Q17TI5 Protein BREVIS RADIX5.4e-1254.39Show/hide
Query:  EWVVQDEPGVYITLSALPGGGNELKRVRFSRRHFTEAQAEKWWAEFGTKVCERNNVK
        EW+ Q EPGV+IT ++LP GGN+LKR+RFSR  F + QA++WW E   K+ E  NV+
Subjt:  EWVVQDEPGVYITLSALPGGGNELKRVRFSRRHFTEAQAEKWWAEFGTKVCERNNVK

Q6YUB8 Protein Brevis radix-like 11.4e-1253.62Show/hide
Query:  STGIKGQNDKA-EWVVQDEPGVYITLSALPGGGNELKRVRFSRRHFTEAQAEKWWAEFGTKVCERNNVK
        +T    ++D+A EWV Q EPGV IT  +LP GGN+LKR+RFSR  F + QA++WWAE   KV E  NV+
Subjt:  STGIKGQNDKA-EWVVQDEPGVYITLSALPGGGNELKRVRFSRRHFTEAQAEKWWAEFGTKVCERNNVK

Q8GYL9 Protein Brevis radix-like 22.4e-1244.09Show/hide
Query:  LSTESLSISINSRLESNGISKTHTLSTGIKGQNDKAEWVVQDEPGVYITLSALPGGGNELKRVRFSRRHFTEAQAEKWWAEFGTKVCERNNVK
        LS E    S++ R ES         +  ++ +++  EWV Q EPGV IT  +LP GGN++KR+RFSR  F + QA+KWWAE   KV E  NV+
Subjt:  LSTESLSISINSRLESNGISKTHTLSTGIKGQNDKAEWVVQDEPGVYITLSALPGGGNELKRVRFSRRHFTEAQAEKWWAEFGTKVCERNNVK

Q8GZ92 Protein Brevis radix-like 42.9e-1354.84Show/hide
Query:  QNDKAEWVVQDEPGVYITLSALPGGGNELKRVRFSRRHFTEAQAEKWWAEFGTKVCERNNVK
        + +  EWV Q EPGV IT  +LPGGGN+LKR+RFSR  F + QA++WWA+   KV E  NV+
Subjt:  QNDKAEWVVQDEPGVYITLSALPGGGNELKRVRFSRRHFTEAQAEKWWAEFGTKVCERNNVK

Q947D2 PH, RCC1 and FYVE domains-containing protein 15.8e-1454.93Show/hide
Query:  TGIKGQND-KAEWVVQDEPGVYITLSALPGGGNELKRVRFSRRHFTEAQAEKWWAEFGTKVCERNNVKSTD
        TG+   N  +AEW+ Q EPGVYITL AL  G  +L+RVRFSRR F E QAE WW+E   KV E+ NV+ ++
Subjt:  TGIKGQND-KAEWVVQDEPGVYITLSALPGGGNELKRVRFSRRHFTEAQAEKWWAEFGTKVCERNNVKSTD

Arabidopsis top hitse value%identityAlignment
AT1G69710.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain2.7e-2748.97Show/hide
Query:  EREFESSWEEVFLWALVYKLKEMAEKMPEGHTAILNSGTVSGHNGSNFNQLSTES---LSISINSRLESNGISKTHTLSTGIKGQNDKAEWVVQDEPGVY
        E E   S +EV + +L  +LKEMAEK  +  +   NS            Q S ++     +S +S+ E+N  SK  + + G + QNDK E VVQDEPGVY
Subjt:  EREFESSWEEVFLWALVYKLKEMAEKMPEGHTAILNSGTVSGHNGSNFNQLSTES---LSISINSRLESNGISKTHTLSTGIKGQNDKAEWVVQDEPGVY

Query:  ITLSALPGGGNELKRVRFSRRHFTEAQAEKWWAEFGTKVCERNNV
        +TL +LPGGG ELKRVRFSR+ FTE QAEKWW E G KVCER+N+
Subjt:  ITLSALPGGGNELKRVRFSRRHFTEAQAEKWWAEFGTKVCERNNV

AT5G12350.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain7.2e-2041.38Show/hide
Query:  ALVYKLKEMAEKMPEGHTAILNSGTVSGHNGSNFNQLSTESLSISINSR-LESNGISKTHTLSTGI------------KGQNDKAEWVVQDEPGVYITLS
        +L  +LK+MAE++P G    + S       GS+  ++   ++    NS+  E NGI+ T   S G             + +N+K EWV QDEPGVYITL+
Subjt:  ALVYKLKEMAEKMPEGHTAILNSGTVSGHNGSNFNQLSTESLSISINSR-LESNGISKTHTLSTGI------------KGQNDKAEWVVQDEPGVYITLS

Query:  ALPGGGNELKRVRFSRRHFTEAQAEKWWAEFGTKVCERNNVKSTD
        AL GG  +LKRVRFSR+ F+E QAE+WWA+   +V E+ NV+  D
Subjt:  ALPGGGNELKRVRFSRRHFTEAQAEKWWAEFGTKVCERNNVKSTD

AT5G19420.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain2.6e-1736.02Show/hide
Query:  ALVYKLKEMAEKMPEGHTAILNSGTVSGHNGS--------------NFNQLSTESLSI--------------SINSRLESN----GISKTHTLSTGIKGQ
        +L  +LK+MAE++P G    + S +++    S              N  +  ++SL+               S + R ++N     I++  T S   + +
Subjt:  ALVYKLKEMAEKMPEGHTAILNSGTVSGHNGS--------------NFNQLSTESLSI--------------SINSRLESN----GISKTHTLSTGIKGQ

Query:  NDKAEWVVQDEPGVYITLSALPGGGNELKRVRFSRRHFTEAQAEKWWAEFGTKVCERNNVK
        N+  EWV QDEPGVYITL+AL GG  +LKRVRFSR+ F+E QAE+WWAE   +V E+ NV+
Subjt:  NDKAEWVVQDEPGVYITLSALPGGGNELKRVRFSRRHFTEAQAEKWWAEFGTKVCERNNVK

AT5G19420.2 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain2.6e-1736.02Show/hide
Query:  ALVYKLKEMAEKMPEGHTAILNSGTVSGHNGS--------------NFNQLSTESLSI--------------SINSRLESN----GISKTHTLSTGIKGQ
        +L  +LK+MAE++P G    + S +++    S              N  +  ++SL+               S + R ++N     I++  T S   + +
Subjt:  ALVYKLKEMAEKMPEGHTAILNSGTVSGHNGS--------------NFNQLSTESLSI--------------SINSRLESN----GISKTHTLSTGIKGQ

Query:  NDKAEWVVQDEPGVYITLSALPGGGNELKRVRFSRRHFTEAQAEKWWAEFGTKVCERNNVK
        N+  EWV QDEPGVYITL+AL GG  +LKRVRFSR+ F+E QAE+WWAE   +V E+ NV+
Subjt:  NDKAEWVVQDEPGVYITLSALPGGGNELKRVRFSRRHFTEAQAEKWWAEFGTKVCERNNVK

AT5G42140.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain1.1e-1543.48Show/hide
Query:  SLSISINSRLESNGISKTHTLSTGIKGQNDKAEWVVQDEPGVYITLSALPGGGNELKRVRFSRRHFTEAQAEKWWAEFGTKVCERNNVKSTD
        S  + I++    +G +   + ++       +AEW+ Q EPGVYITL AL  G  +LKRVRFSRR F E QAE WW+E   +V E+ N++ TD
Subjt:  SLSISINSRLESNGISKTHTLSTGIKGQNDKAEWVVQDEPGVYITLSALPGGGNELKRVRFSRRHFTEAQAEKWWAEFGTKVCERNNVKSTD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCTCGTTGGTGGGCCCATTTTGTTGCATTCTTTGTCAGAAGGTGGAGGAAGATTTGGATCACATTCTTTGGAGCTGTGATTATGCGCGTTTGGTGTGGGGCTTTTT
CTTTGATGCTTTTGGGATGCAGGCTCTGAGTTACCTGGATTGTAGAGAGTTGATTGAGGAAGGAGAAAGAAATAAAAGAATTTTTCAAGGAATGGAGTCCTCTTTTGAAG
CTTTTTTTGATTCTGTTATATTCTTGGCTATTTCTTGGTGTAAACTCTCTCCCTTACTATCATCATACTCATATGCTTCCCTCATCAATAGTTGGGAAAGCCTTTTAGCT
ATGGTGGAGGAGGTGTTACGAGGAAATGGTCGTTTTCTCTGGAATGCCAGTTTTTGTGTGGTTTCATGGGGTCTTTTGCTTGAGAGAGAGTTTGAGAGTTCTTGGGAGGA
GGTTTTTCTTTGGGCCTTGGTGTACAAGTTGAAAGAGATGGCTGAGAAGATGCCAGAGGGACACACTGCTATCCTCAACTCTGGCACTGTTTCTGGGCATAATGGTAGTA
ATTTCAACCAGCTTTCCACTGAGAGCCTTTCAATAAGCATAAACTCTCGTTTAGAGTCGAATGGCATTTCAAAAACTCATACCTTATCAACTGGAATCAAAGGACAAAAT
GACAAGGCAGAATGGGTTGTACAAGACGAACCAGGGGTGTATATAACTCTGTCTGCTTTGCCAGGAGGAGGCAATGAGCTGAAACGAGTTCGTTTCAGTCGAAGACATTT
TACAGAAGCACAAGCAGAGAAATGGTGGGCGGAATTTGGAACCAAGGTATGTGAGCGGAATAACGTAAAGAGTACAGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCCTCGTTGGTGGGCCCATTTTGTTGCATTCTTTGTCAGAAGGTGGAGGAAGATTTGGATCACATTCTTTGGAGCTGTGATTATGCGCGTTTGGTGTGGGGCTTTTT
CTTTGATGCTTTTGGGATGCAGGCTCTGAGTTACCTGGATTGTAGAGAGTTGATTGAGGAAGGAGAAAGAAATAAAAGAATTTTTCAAGGAATGGAGTCCTCTTTTGAAG
CTTTTTTTGATTCTGTTATATTCTTGGCTATTTCTTGGTGTAAACTCTCTCCCTTACTATCATCATACTCATATGCTTCCCTCATCAATAGTTGGGAAAGCCTTTTAGCT
ATGGTGGAGGAGGTGTTACGAGGAAATGGTCGTTTTCTCTGGAATGCCAGTTTTTGTGTGGTTTCATGGGGTCTTTTGCTTGAGAGAGAGTTTGAGAGTTCTTGGGAGGA
GGTTTTTCTTTGGGCCTTGGTGTACAAGTTGAAAGAGATGGCTGAGAAGATGCCAGAGGGACACACTGCTATCCTCAACTCTGGCACTGTTTCTGGGCATAATGGTAGTA
ATTTCAACCAGCTTTCCACTGAGAGCCTTTCAATAAGCATAAACTCTCGTTTAGAGTCGAATGGCATTTCAAAAACTCATACCTTATCAACTGGAATCAAAGGACAAAAT
GACAAGGCAGAATGGGTTGTACAAGACGAACCAGGGGTGTATATAACTCTGTCTGCTTTGCCAGGAGGAGGCAATGAGCTGAAACGAGTTCGTTTCAGTCGAAGACATTT
TACAGAAGCACAAGCAGAGAAATGGTGGGCGGAATTTGGAACCAAGGTATGTGAGCGGAATAACGTAAAGAGTACAGATTAA
Protein sequenceShow/hide protein sequence
MSSLVGPFCCILCQKVEEDLDHILWSCDYARLVWGFFFDAFGMQALSYLDCRELIEEGERNKRIFQGMESSFEAFFDSVIFLAISWCKLSPLLSSYSYASLINSWESLLA
MVEEVLRGNGRFLWNASFCVVSWGLLLEREFESSWEEVFLWALVYKLKEMAEKMPEGHTAILNSGTVSGHNGSNFNQLSTESLSISINSRLESNGISKTHTLSTGIKGQN
DKAEWVVQDEPGVYITLSALPGGGNELKRVRFSRRHFTEAQAEKWWAEFGTKVCERNNVKSTD