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Spg026847 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg026847
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold13:25891560..25893317
RNA-Seq ExpressionSpg026847
SyntenySpg026847
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043405.1 hypothetical protein E6C27_scaffold1639G00040 [Cucumis melo var. makuwa]1.3e-2850.68Show/hide
Query:  KKGETSTSLVKPKVVKDEKCSP--VLRYVPLSRHKKGESPFTEYPKSIK-------------KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVVDI
        +KGE STS  K  ++ DEK S   +LRYVPLSR +KGESPF ++P+ +K             KKLL+EG+ +P +RKG GYKSPEP+ I RK K KV+D 
Subjt:  KKGETSTSLVKPKVVKDEKCSP--VLRYVPLSRHKKGESPFTEYPKSIK-------------KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVVDI

Query:  NHITAKEVDDSKEKESVDQRTSVFRRIRPPIAHASVFQRLTVNETEEE
        NHIT  EVD  +EKE   QR S F +IRP +   +VF+RL+V +TE +
Subjt:  NHITAKEVDDSKEKESVDQRTSVFRRIRPPIAHASVFQRLTVNETEEE

KAA0047672.1 uncharacterized protein E6C27_scaffold115G001730 [Cucumis melo var. makuwa]6.3e-2855Show/hide
Query:  KGETSTSLVKPKVVKDEKCS--PVLRYVPLSRHKKGESPFTEYPKSIKK---KLLKEGYSL---PTTRKGLGYKSPEPVRITRKGKAKVVDINHITAKEV
        K E STS  K  ++ +E  S  P+LRYVPLSR KKGESPF E P+ +K    ++LKE +++     T+KGLGYKSPEP+RITRKGK KVVD NHIT KEV
Subjt:  KGETSTSLVKPKVVKDEKCS--PVLRYVPLSRHKKGESPFTEYPKSIKK---KLLKEGYSL---PTTRKGLGYKSPEPVRITRKGKAKVVDINHITAKEV

Query:  DDSKEKESVDQRTSVFRRIRPPIAHASVFQRLTVNETEEE
        D  + KE   QRTS F RI P +A A VF+RL++ E + +
Subjt:  DDSKEKESVDQRTSVFRRIRPPIAHASVFQRLTVNETEEE

KAA0055957.1 uncharacterized protein E6C27_scaffold319G00830 [Cucumis melo var. makuwa]3.3e-2946.89Show/hide
Query:  KGETSTSLVKPKVVKDEKCS--PVLRYVPLSRHKKGESPFTEYPKSIK-------------------------------------------KKLLKEGYS
        K E ST+  K  ++ DEK S  P+LRYVPLSR KKGESPF E P+ +K                                           KKLL+EG+ 
Subjt:  KGETSTSLVKPKVVKDEKCS--PVLRYVPLSRHKKGESPFTEYPKSIK-------------------------------------------KKLLKEGYS

Query:  LPTTRKGLGYKSPEPVRITRKGKAKVVDINHITAKEVDDSKEKESVDQRTSVFRRIRPPIAHASVFQRLTVNETEEE
        +P +RKGLGYKSPEP+RITRKGK KVVD NHIT KEVD  +EKE  +QRTS F RI P +A A VF+RL++ E + +
Subjt:  LPTTRKGLGYKSPEPVRITRKGKAKVVDINHITAKEVDDSKEKESVDQRTSVFRRIRPPIAHASVFQRLTVNETEEE

KAA0061113.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.8e-3030.46Show/hide
Query:  SQEKYDSIENENESWTLVVRHKKQKQSYARKESRLFRDGKRKVKSLRKKGKKKTRRSKPVMEESEDLFCPPQPITLAEYFPRCFLDDSQGE---------
        SQEK   IE ++E WT+V R KK+K +  +KESRL+ + +R  K+ + K KKKTR+ K V E+ +D     + +TLA++FP  FL D Q E         
Subjt:  SQEKYDSIENENESWTLVVRHKKQKQSYARKESRLFRDGKRKVKSLRKKGKKKTRRSKPVMEESEDLFCPPQPITLAEYFPRCFLDDSQGE---------

Query:  -------TLE-TVTCHIVDVVEDD-----------------------------------DVPSS------------------------------------
               T E T  C  +D  ++D                                    +P S                                    
Subjt:  -------TLE-TVTCHIVDVVEDD-----------------------------------DVPSS------------------------------------

Query:  ---------SSEIEVVEDVEASDLK-----------------KGETSTSLVKPKVVKDEKCS--PVLRYVPLSRHKKGESPFTEYPKSIK----------
                 S E+ +V   +   LK                 K E STS  K  +V DEK S  P+LRYVPLSR KKGESPF E+P+ +K          
Subjt:  ---------SSEIEVVEDVEASDLK-----------------KGETSTSLVKPKVVKDEKCS--PVLRYVPLSRHKKGESPFTEYPKSIK----------

Query:  -------------------------------------------------------------------KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKA
                                                                           KKLL+EG+++P +RKGLGYK PEP+RITRKGK 
Subjt:  -------------------------------------------------------------------KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKA

Query:  KVVDINHITAKEVDDSKEKESVDQRTSVFRRIRPPIAHASVFQRLTVNETEEE
        KVVD NHIT KEVD  +EKE   QRTS F R+ P +A A VF+RL++ E E +
Subjt:  KVVDINHITAKEVDDSKEKESVDQRTSVFRRIRPPIAHASVFQRLTVNETEEE

TYK28162.1 uncharacterized protein E5676_scaffold289G00760 [Cucumis melo var. makuwa]1.3e-2844.92Show/hide
Query:  KGETSTSLVKPKVVKDEKCS--PVLRYVPLSRHKKGESPFTEYPKSIK----------------------------------------------------
        K E ST+  K  ++ DEK S  P+LRYVPLSR KKGESPF E P+ +K                                                    
Subjt:  KGETSTSLVKPKVVKDEKCS--PVLRYVPLSRHKKGESPFTEYPKSIK----------------------------------------------------

Query:  -KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVVDINHITAKEVDDSKEKESVDQRTSVFRRIRPPIAHASVFQRLTVNETEEE
         KKLL+EG+ +P +RKGLGYKSPEP+RITRKGK KVVD NHIT KEVD  +EKE  +QRTS F RI P +A A VF+RL++ E E +
Subjt:  -KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVVDINHITAKEVDDSKEKESVDQRTSVFRRIRPPIAHASVFQRLTVNETEEE

TrEMBL top hitse value%identityAlignment
A0A5A7TPR5 RNase H domain-containing protein6.1e-2950.68Show/hide
Query:  KKGETSTSLVKPKVVKDEKCSP--VLRYVPLSRHKKGESPFTEYPKSIK-------------KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVVDI
        +KGE STS  K  ++ DEK S   +LRYVPLSR +KGESPF ++P+ +K             KKLL+EG+ +P +RKG GYKSPEP+ I RK K KV+D 
Subjt:  KKGETSTSLVKPKVVKDEKCSP--VLRYVPLSRHKKGESPFTEYPKSIK-------------KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVVDI

Query:  NHITAKEVDDSKEKESVDQRTSVFRRIRPPIAHASVFQRLTVNETEEE
        NHIT  EVD  +EKE   QR S F +IRP +   +VF+RL+V +TE +
Subjt:  NHITAKEVDDSKEKESVDQRTSVFRRIRPPIAHASVFQRLTVNETEEE

A0A5A7UMY2 Reverse transcriptase domain-containing protein1.6e-2946.89Show/hide
Query:  KGETSTSLVKPKVVKDEKCS--PVLRYVPLSRHKKGESPFTEYPKSIK-------------------------------------------KKLLKEGYS
        K E ST+  K  ++ DEK S  P+LRYVPLSR KKGESPF E P+ +K                                           KKLL+EG+ 
Subjt:  KGETSTSLVKPKVVKDEKCS--PVLRYVPLSRHKKGESPFTEYPKSIK-------------------------------------------KKLLKEGYS

Query:  LPTTRKGLGYKSPEPVRITRKGKAKVVDINHITAKEVDDSKEKESVDQRTSVFRRIRPPIAHASVFQRLTVNETEEE
        +P +RKGLGYKSPEP+RITRKGK KVVD NHIT KEVD  +EKE  +QRTS F RI P +A A VF+RL++ E + +
Subjt:  LPTTRKGLGYKSPEPVRITRKGKAKVVDINHITAKEVDDSKEKESVDQRTSVFRRIRPPIAHASVFQRLTVNETEEE

A0A5D3BY54 Ty3-gypsy retrotransposon protein8.6e-3130.46Show/hide
Query:  SQEKYDSIENENESWTLVVRHKKQKQSYARKESRLFRDGKRKVKSLRKKGKKKTRRSKPVMEESEDLFCPPQPITLAEYFPRCFLDDSQGE---------
        SQEK   IE ++E WT+V R KK+K +  +KESRL+ + +R  K+ + K KKKTR+ K V E+ +D     + +TLA++FP  FL D Q E         
Subjt:  SQEKYDSIENENESWTLVVRHKKQKQSYARKESRLFRDGKRKVKSLRKKGKKKTRRSKPVMEESEDLFCPPQPITLAEYFPRCFLDDSQGE---------

Query:  -------TLE-TVTCHIVDVVEDD-----------------------------------DVPSS------------------------------------
               T E T  C  +D  ++D                                    +P S                                    
Subjt:  -------TLE-TVTCHIVDVVEDD-----------------------------------DVPSS------------------------------------

Query:  ---------SSEIEVVEDVEASDLK-----------------KGETSTSLVKPKVVKDEKCS--PVLRYVPLSRHKKGESPFTEYPKSIK----------
                 S E+ +V   +   LK                 K E STS  K  +V DEK S  P+LRYVPLSR KKGESPF E+P+ +K          
Subjt:  ---------SSEIEVVEDVEASDLK-----------------KGETSTSLVKPKVVKDEKCS--PVLRYVPLSRHKKGESPFTEYPKSIK----------

Query:  -------------------------------------------------------------------KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKA
                                                                           KKLL+EG+++P +RKGLGYK PEP+RITRKGK 
Subjt:  -------------------------------------------------------------------KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKA

Query:  KVVDINHITAKEVDDSKEKESVDQRTSVFRRIRPPIAHASVFQRLTVNETEEE
        KVVD NHIT KEVD  +EKE   QRTS F R+ P +A A VF+RL++ E E +
Subjt:  KVVDINHITAKEVDDSKEKESVDQRTSVFRRIRPPIAHASVFQRLTVNETEEE

A0A5D3C8N8 Ribonuclease H3.0e-2855Show/hide
Query:  KGETSTSLVKPKVVKDEKCS--PVLRYVPLSRHKKGESPFTEYPKSIKK---KLLKEGYSL---PTTRKGLGYKSPEPVRITRKGKAKVVDINHITAKEV
        K E STS  K  ++ +E  S  P+LRYVPLSR KKGESPF E P+ +K    ++LKE +++     T+KGLGYKSPEP+RITRKGK KVVD NHIT KEV
Subjt:  KGETSTSLVKPKVVKDEKCS--PVLRYVPLSRHKKGESPFTEYPKSIKK---KLLKEGYSL---PTTRKGLGYKSPEPVRITRKGKAKVVDINHITAKEV

Query:  DDSKEKESVDQRTSVFRRIRPPIAHASVFQRLTVNETEEE
        D  + KE   QRTS F RI P +A A VF+RL++ E + +
Subjt:  DDSKEKESVDQRTSVFRRIRPPIAHASVFQRLTVNETEEE

A0A5D3DXC7 Reverse transcriptase domain-containing protein6.1e-2944.92Show/hide
Query:  KGETSTSLVKPKVVKDEKCS--PVLRYVPLSRHKKGESPFTEYPKSIK----------------------------------------------------
        K E ST+  K  ++ DEK S  P+LRYVPLSR KKGESPF E P+ +K                                                    
Subjt:  KGETSTSLVKPKVVKDEKCS--PVLRYVPLSRHKKGESPFTEYPKSIK----------------------------------------------------

Query:  -KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVVDINHITAKEVDDSKEKESVDQRTSVFRRIRPPIAHASVFQRLTVNETEEE
         KKLL+EG+ +P +RKGLGYKSPEP+RITRKGK KVVD NHIT KEVD  +EKE  +QRTS F RI P +A A VF+RL++ E E +
Subjt:  -KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVVDINHITAKEVDDSKEKESVDQRTSVFRRIRPPIAHASVFQRLTVNETEEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGGATCCCAAGAAAAGTATGATTCCATCGAAAATGAGAATGAAAGTTGGACCCTTGTCGTTCGTCACAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCG
CCTATTTCGAGATGGTAAAAGAAAGGTTAAGTCTCTAAGGAAGAAAGGAAAAAAGAAGACAAGGAGGTCAAAACCTGTCATGGAGGAAAGTGAAGATTTATTTTGCCCTC
CACAACCCATAACTTTGGCAGAGTACTTCCCAAGATGCTTTCTCGATGATAGTCAAGGAGAGACACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGAT
GATGTCCCTTCTAGTTCCTCGGAAATAGAAGTTGTTGAAGATGTGGAGGCTTCTGACCTAAAAAAGGGTGAAACGTCTACAAGCCTTGTGAAACCTAAAGTTGTAAAAGA
TGAGAAGTGTTCACCTGTCCTACGATACGTCCCTTTATCTCGGCATAAAAAGGGTGAATCACCTTTCACTGAATATCCAAAAAGCATAAAGAAGAAGCTTCTAAAAGAAG
GTTATAGTCTGCCTACAACGAGAAAAGGACTTGGATATAAGTCGCCTGAGCCAGTTCGCATAACAAGAAAAGGGAAGGCGAAAGTGGTAGACATAAATCATATAACAGCA
AAGGAGGTTGATGACTCAAAAGAAAAAGAGAGCGTCGACCAACGAACTTCTGTTTTTAGGCGCATCAGGCCACCGATTGCACATGCTTCAGTCTTCCAAAGGTTAACTGT
GAATGAAACAGAAGAAGAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGGATCCCAAGAAAAGTATGATTCCATCGAAAATGAGAATGAAAGTTGGACCCTTGTCGTTCGTCACAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCG
CCTATTTCGAGATGGTAAAAGAAAGGTTAAGTCTCTAAGGAAGAAAGGAAAAAAGAAGACAAGGAGGTCAAAACCTGTCATGGAGGAAAGTGAAGATTTATTTTGCCCTC
CACAACCCATAACTTTGGCAGAGTACTTCCCAAGATGCTTTCTCGATGATAGTCAAGGAGAGACACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGAT
GATGTCCCTTCTAGTTCCTCGGAAATAGAAGTTGTTGAAGATGTGGAGGCTTCTGACCTAAAAAAGGGTGAAACGTCTACAAGCCTTGTGAAACCTAAAGTTGTAAAAGA
TGAGAAGTGTTCACCTGTCCTACGATACGTCCCTTTATCTCGGCATAAAAAGGGTGAATCACCTTTCACTGAATATCCAAAAAGCATAAAGAAGAAGCTTCTAAAAGAAG
GTTATAGTCTGCCTACAACGAGAAAAGGACTTGGATATAAGTCGCCTGAGCCAGTTCGCATAACAAGAAAAGGGAAGGCGAAAGTGGTAGACATAAATCATATAACAGCA
AAGGAGGTTGATGACTCAAAAGAAAAAGAGAGCGTCGACCAACGAACTTCTGTTTTTAGGCGCATCAGGCCACCGATTGCACATGCTTCAGTCTTCCAAAGGTTAACTGT
GAATGAAACAGAAGAAGAA
Protein sequenceShow/hide protein sequence
MKGSQEKYDSIENENESWTLVVRHKKQKQSYARKESRLFRDGKRKVKSLRKKGKKKTRRSKPVMEESEDLFCPPQPITLAEYFPRCFLDDSQGETLETVTCHIVDVVEDD
DVPSSSSEIEVVEDVEASDLKKGETSTSLVKPKVVKDEKCSPVLRYVPLSRHKKGESPFTEYPKSIKKKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVVDINHITA
KEVDDSKEKESVDQRTSVFRRIRPPIAHASVFQRLTVNETEEE